Rh6CG142500

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
18461479 .. 18461823
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG142500.1

Sequence Viewer

Length: 345 bp
ATGAGGTCTGGTTACATTTCGGAAAAAGGTGATGTTTACAGCTTTGATGTTCTATTACTTGTGTTCTTGACAGGACAAGAAGCTTTGATTAGATATGAAGAGGGAGGAGAGTATCAGTCAATTATTCCATATGTGAAATCTCATGCTTGTGATGGCCAGATTGAGACAATAGTGGATCCTGAAGTCCTTAGAGAGGCCAAGGGAGATAAACACACACAACAATACTTGCATGATTTCCTTGCACTGGCATTGTTATGCACCAGTGACAGTAGTGAAGCACGGCCTGATATGATCGATGTGGCGAAAGAACTCGTACGAATTGAGAAGTGTTTATTGCCTTGCTAG

Protein Analysis

114

Amino Acids

12.84

Weight (kDa)

4.65

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 170, 183
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 2 cut(s) 193, 244
AluBI AGCT 2 cut(s) 42, 83
AluI AGCT 2 cut(s) 42, 83
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 2 cut(s) 170, 183
AoxI GGCC 3 cut(s) 154, 195, 281
AsuHPI GGTGA 1 cut(s) 41
BalI TGGCCA 1 cut(s) 156
BamHI GGATCC 1 cut(s) 175
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 244
Bse1I ACTGG 2 cut(s) 249, 261
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 193, 244
BseNI ACTGG 2 cut(s) 249, 261
BseRI GAGGAG 1 cut(s) 120
BshFI GGCC 3 cut(s) 156, 197, 283
BshVI ATCGAT 1 cut(s) 294
BsiWI CGTACG 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 193, 244
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 3 cut(s) 156, 197, 283
Bsp143I GATC 2 cut(s) 175, 291
BspANI GGCC 3 cut(s) 156, 197, 283
BspDI ATCGAT 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 2 cut(s) 170, 183
BsrI ACTGG 2 cut(s) 249, 261
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 175, 291
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 188
BstENI CCTNNNNNAGG 1 cut(s) 191
BstKTI GATC 2 cut(s) 178, 294
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 2 cut(s) 175, 291
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 3 cut(s) 156, 197, 283
BsuTUI ATCGAT 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 242, 268
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 1 cut(s) 314
CviAII CATG 2 cut(s) 143, 230
CviJI RGCY 5 cut(s) 42, 83, 156, 197, 283
CviKI_1 RGCY 5 cut(s) 42, 83, 156, 197, 283
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 188
DpnI GATC 2 cut(s) 177, 293
DpnII GATC 2 cut(s) 175, 291
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 146, 233
FaiI YATR 7 cut(s) 96, 130, 132, 144, 231, 256, 290
FatI CATG 2 cut(s) 142, 229
FauNDI CATATG 1 cut(s) 130
FspBI CTAG 1 cut(s) 343
HaeIII GGCC 3 cut(s) 156, 197, 283
Hin1II CATG 2 cut(s) 146, 233
HindIII AAGCTT 1 cut(s) 81
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 67, 179
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 229, 242, 258
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 2 cut(s) 146, 233
Kzo9I GATC 2 cut(s) 175, 291
LpnPI CCDG 6 cut(s) 57, 170, 192, 230, 274, 297
MaeI CTAG 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 11, 263
MalI GATC 2 cut(s) 177, 293
MboI GATC 2 cut(s) 175, 291
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 2 cut(s) 120, 318
MluNI TGGCCA 1 cut(s) 156
MnlI CCTC 3 cut(s) 94, 98, 187
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 147, 253
Msp20I TGGCCA 1 cut(s) 156
NdeI CATATG 1 cut(s) 130
NdeII GATC 2 cut(s) 175, 291
NlaIII CATG 2 cut(s) 146, 233
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 263
Pfl23II CGTACG 1 cut(s) 313
PspLI CGTACG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 2 cut(s) 147, 253
Sau3AI GATC 2 cut(s) 175, 291
SetI ASST 4 cut(s) 8, 31, 44, 85
SmiMI CAYNNNNRTG 2 cut(s) 147, 253
Sse9I AATT 2 cut(s) 120, 318
SspMI CTAG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 120, 318
TscAI CASTG 2 cut(s) 249, 268
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 2 cut(s) 249, 268
XagI CCTNNNNNAGG 1 cut(s) 191
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.