Rorug05G0531900

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
72019373 .. 72019864
492 bp
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UTR
Exon/CDS
Intron
Rorug05G0531900.1

Sequence Viewer

Length: 492 bp
ATGGCTAGAGTTGATCAAAATGTGTTTGTCAAGGTAGGTTTGGTGTTAGTAAGTGTAGCACTATTCATGTCATCATTTGCAGCAACTCAAGAATATGAGGTTATTTATCAAATTTCTGATGATGCTGCGGCGAGCCCTATTGGCATCGAGGTTGACTTAGTCATTGATGATGCCTTCCCTCCAATTTCTTCAGAAAACGGTCAATATGCGTTCCCTCCTAACCTATCACCGGAATCTTATAAGAACTTGGATGAATGTGTAAATAAGATTACAGGATATTATGCTGAAGAGATTTTGCCCCGAATTTTTAAAAGCGAACCTCTCACTACGGATAGTTGCAAAGCCATTCTGCATTTGGGATATGATTGTCACATTCGGTCAGTGAAAACTCTGCTCTCACGTCAGGAACTAAAAGAAAAAGCTTCTGAGATACTGCCTAAAAGTGTGCAGATTTGGGAAACATGTGCCTTTGTTGCCCCTTCTCCTTTCTAA

Protein Analysis

163

Amino Acids

18.1

Weight (kDa)

4.63

Isoelectric Point (pI)

66.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 85 - 155 5e-06 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AciI CCGC 1 cut(s) 128
AcsI RAATTY 2 cut(s) 111, 303
AcuI CTGAAG 2 cut(s) 174, 306
AfiI CCNNNNNNNGG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 461
AjiI CACGTC 1 cut(s) 401
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 80, 125
ApoI RAATTY 2 cut(s) 111, 303
AsuHPI GGTGA 1 cut(s) 219
BanII GRGCYC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 92, 112
BclI TGATCA 1 cut(s) 13
BfaI CTAG 1 cut(s) 6
BglI GCCNNNNNGGC 1 cut(s) 141
BisI GCNGC 3 cut(s) 81, 126, 129
BlsI GCNGC 3 cut(s) 82, 127, 130
BmgBI CACGTC 1 cut(s) 401
BmsI GCATC 3 cut(s) 112, 153, 160
BpuEI CTTGAG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 417
BseXI GCAGC 2 cut(s) 92, 112
BsgI GTGCAG 1 cut(s) 467
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 418
BssMI GATC 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 157, 426
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 141, 473
BstNSI RCATGY 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 92, 112
BtrI CACGTC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 133
CviAII CATG 2 cut(s) 67, 462
CviJI RGCY 4 cut(s) 5, 135, 344, 422
CviKI_1 RGCY 4 cut(s) 5, 135, 344, 422
DdeI CTNAG 2 cut(s) 157, 426
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 174, 306
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 2 cut(s) 70, 465
FaiI YATR 7 cut(s) 68, 96, 207, 240, 282, 363, 463
FatI CATG 2 cut(s) 66, 461
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 81, 126, 129
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 81, 126, 129
FspBI CTAG 1 cut(s) 6
GluI GCNGC 3 cut(s) 81, 126, 129
HapII CCGG 1 cut(s) 230
Hin1II CATG 2 cut(s) 70, 465
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 118, 193, 427
Hpy188III TCNNGA 2 cut(s) 89, 404
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 184, 489
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 4 cut(s) 80, 339, 352, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 473
HpyF3I CTNAG 2 cut(s) 157, 426
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 2 cut(s) 70, 465
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 243, 258, 389
Lsp1109I GCAGC 2 cut(s) 92, 112
LweI GCATC 3 cut(s) 112, 153, 160
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 180, 299
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 3 cut(s) 111, 183, 303
MnlI CCTC 5 cut(s) 91, 142, 189, 225, 330
MseI TTAA 1 cut(s) 309
MspI CCGG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 141, 473
NdeII GATC 1 cut(s) 13
NlaIII CATG 2 cut(s) 70, 465
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 1 cut(s) 465
PciI ACATGT 1 cut(s) 461
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 82, 127, 130
PscI ACATGT 1 cut(s) 461
PsiI TTATAA 1 cut(s) 240
PsyI GACNNNGTC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 81, 126, 129
Sau3AI GATC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 137
SetI ASST 8 cut(s) 36, 40, 102, 153, 225, 322, 403, 424
SfaNI GCATC 3 cut(s) 112, 153, 160
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 3 cut(s) 111, 183, 303
SsiI CCGC 1 cut(s) 128
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 1 cut(s) 366
TasI AATT 3 cut(s) 111, 183, 303
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 80, 125
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 55, 267
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 1 cut(s) 387
Tth111I GACNNNGTC 1 cut(s) 158
XapI RAATTY 2 cut(s) 111, 303
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.