Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

4358459 .. 4360215

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCATCCAAAGTCTTGTTTTCGTTGCTTGCGTGTTTGAGAAAGGAGGAACGAGATACTGATAGATCCTCATTCTTGATCAATGGAAGCAAAGTACTAGAGGATCTCATTGTTTCTTTTGATGGCAAATCTAATCCTATTCGCAATTACTCTGCTGATGAGCTCATCAAGGCAACCAACAACTTTGATGCTTCTTGCATTATGCAAGAATGTAGAATCTACAAAATGTTCAGTGGTGTTCTAGACGATCGATCTATTATCATTAAGAAGTACTTCACGTTGAGCTGGCTCAATGAGGATGCAGTAAGATCTCTAGCTATTCGTGACATTATCATTTCAACGCAGATGAGCAACCATAATAATGTTTTAAAACTTTTGGGATGCTGCTTAGAGTTTCCTATACCAGCTCTAGTGCATGAATATGCAACAATAGGAGCGCTAAATGATGAAGGAGGTTTCGGGGCTAGAGAATCCTTAACCTGGAAAGCTAGACTAGGTATAGCGAGGCAGCTTGCAAACGCTCTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

176

Amino Acids

19.71

Weight (kDa)

6.73

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	60, 111
AfaI	GTAC	2 cut(s)	96, 272
AfeI	AGCGCT	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	6 cut(s)	163, 285, 317, 407, 488, 511
AluI	AGCT	6 cut(s)	163, 285, 317, 407, 488, 511
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	60, 111
Aor51HI	AGCGCT	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	384, 508
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	371, 520
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	1 cut(s)	78
BfaI	CTAG	7 cut(s)	98, 242, 314, 410, 465, 489, 494
BfoI	RGCGCY	1 cut(s)	440
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	2 cut(s)	385, 509
BlsI	GCNGC	2 cut(s)	386, 510
BmcAI	AGTACT	2 cut(s)	96, 272
Bme1390I	CCNGG	1 cut(s)	481
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	178, 289, 371
Bsa29I	ATCGAT	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	481
BseCI	ATCGAT	1 cut(s)	250
BseGI	GGATG	3 cut(s)	5, 304, 386
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	371, 520
Bsh1285I	CGRYCG	1 cut(s)	250
BshVI	ATCGAT	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
BspDI	ATCGAT	1 cut(s)	250
BspPI	GGATC	2 cut(s)	60, 111
BssMI	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
Bst2UI	CCWGG	1 cut(s)	481
BstC8I	GCNNGC	3 cut(s)	30, 287, 513
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	3 cut(s)	5, 304, 386
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	6 cut(s)	68, 81, 106, 250, 254, 311
BstMBI	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
BstMCI	CGRYCG	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	371, 520
BstX2I	RGATCY	3 cut(s)	65, 103, 308
BstYI	RGATCY	3 cut(s)	65, 103, 308
Bsu15I	ATCGAT	1 cut(s)	250
BsuTUI	ATCGAT	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	5, 304, 386
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	30, 287, 513
CfoI	GCGC	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	95, 271
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	8 cut(s)	163, 285, 289, 317, 407, 464, 488, 511
CviKI_1	RGCY	8 cut(s)	163, 285, 289, 317, 407, 464, 488, 511
CviQI	GTAC	2 cut(s)	95, 271
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	6 cut(s)	67, 80, 105, 249, 253, 310
DpnII	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
DraI	TTTAAA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	1 cut(s)	419
FaiI	YATR	7 cut(s)	203, 357, 401, 417, 423, 500, 529
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	385, 509
FokI	GGATG	2 cut(s)	311, 393
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	385, 509
FspBI	CTAG	7 cut(s)	98, 242, 314, 410, 465, 489, 494
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	385, 509
HaeII	RGCGCY	1 cut(s)	440
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	2 cut(s)	216, 470
Hpy188III	TCNNGA	3 cut(s)	76, 242, 323
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	6 cut(s)	198, 205, 302, 415, 425, 515
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	4 cut(s)	271, 417, 466, 493
Lsp1109I	GCAGC	2 cut(s)	371, 520
LweI	GCATC	3 cut(s)	178, 289, 371
MaeI	CTAG	7 cut(s)	98, 242, 314, 410, 465, 489, 494
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	6 cut(s)	67, 80, 105, 249, 253, 310
MboI	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
MflI	RGATCY	3 cut(s)	65, 103, 308
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	6 cut(s)	40, 79, 94, 289, 446, 498
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	3 cut(s)	264, 368, 476
MslI	CAYNNNNRTG	2 cut(s)	360, 420
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
NdeII	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
NlaIII	CATG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	216, 470
PkrI	GCNGC	2 cut(s)	386, 510
Ple19I	CGATCG	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PsuI	RGATCY	3 cut(s)	65, 103, 308
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	96, 272
RsaNI	GTAC	2 cut(s)	95, 271
RseI	CAYNNNNRTG	2 cut(s)	360, 420
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	264, 368, 476
SatI	GCNGC	2 cut(s)	385, 509
Sau3AI	GATC	6 cut(s)	65, 78, 103, 247, 251, 308
ScaI	AGTACT	2 cut(s)	96, 272
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	178, 289, 371
SmiMI	CAYNNNNRTG	2 cut(s)	360, 420
Sse9I	AATT	1 cut(s)	145
SspMI	CTAG	7 cut(s)	98, 242, 314, 410, 465, 489, 494
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	479
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	250
TasI	AATT	1 cut(s)	145
TatI	WGTACW	2 cut(s)	94, 270
TfiI	GAWTC	2 cut(s)	216, 470
Tru1I	TTAA	3 cut(s)	264, 368, 476
Tru9I	TTAA	3 cut(s)	264, 368, 476
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	384, 508
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	432, 462
TspRI	CASTG	1 cut(s)	238
XbaI	TCTAGA	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	7 cut(s)	98, 242, 314, 410, 465, 489, 494
ZrmI	AGTACT	2 cut(s)	96, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.