Rroxscaffold_7G00201830

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
49646271 .. 49647308
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201830.1

Sequence Viewer

Length: 1038 bp
ATGGACGAAAGGGGTAAAGCATTCTTCAACAACGGAAGCATCTTGTTAGAGGATCTCATTGCTTCTTGTGATGGAAAATCTAATCCTATTCGCAATTACTCTGCTTCTGAGCTCATCAGGGCCACCAACAATTTTGATCCTTCCTGCATCATACAAAATTGTACTCCTACTGATCATGAGGCTAGTCAATTTCATCGTTTTATACATGTTTACCATGGTTACAAAGTGTTCAAGGGTTTTCTAGACGATCGATATATCATTGTTAAGAAGTTCATGGGGACCGGGGATGAAACTAGGTCCCTGGCTATTCGGGACATTATTGTTTCAATGCAAATGAGCAACCATAAGAATGTCTTGAAGCTCTTGGGGTGCTGTTTAGAGTTCCCTATACCAGCTCTGGTGCATGAATATGCAACAAAAGGAGTTGTCACTTATCAAGGAGGTTTCGGGGCCAATGAGTCGTTGCCCTGGAAAGTTAGGTTGCGTATTGCAAAGCAGCTTGCAAATGCACTTACATATCTTCATACCGCCTTTCCGAGGCCTATCATTCACAGGGACCTGAAACCCAACTGCATTTTTTTGGATGAGGACTATGTCCCCAAACTCTGCAACTTCTCACTGTCCATAACTATACCTCCTAAGCAATCGTATGCTGAAGATAACCCGAAAGGGACATTTGGTTATGTTGACCCTACCTACATGAGGTCTGGTTACATTTCGGAAAAAGGTGATGTTTACAGCTTTGGTGTTCTATTACTTGTGTTCTTGACAGGACAAGAAGCTTTGATTAGATATGAAGAGGGAGGAGAGTATCAGTCAATTATTCCATATGTGAAATCTCATGCTTGTGATGGCCAGATTGAGACAATAGTGGATCCTGAAGCCCTTAGAGAGGCCAAGGGAGATAAACACACACAACAATACTTGCATGATTTCCTGGCATTGTTATGCACCAGTGACAGTAGTGAAGCACGGCCTGATATGATCGATGTGGCGAAAGAACTCGTACGAATTGAGAAGTGTTTATTGCCTTGCTAG

Protein Analysis

345

Amino Acids

38.95

Weight (kDa)

6.01

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 67 - 275 1.6e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 76 - 322 1.9e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 528
AclWI GGATC 4 cut(s) 60, 131, 869, 882
AcoI YGGCCR 1 cut(s) 853
AcuI CTGAAG 2 cut(s) 675, 900
AfaI GTAC 2 cut(s) 163, 1008
AfiI CCNNNNNNNGG 3 cut(s) 537, 702, 892
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 4 cut(s) 28, 232, 327, 358
AjnI CCWGG 3 cut(s) 300, 467, 936
AluBI AGCT 6 cut(s) 112, 361, 395, 499, 741, 782
AluI AGCT 6 cut(s) 112, 361, 395, 499, 741, 782
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 857
AlwI GGATC 4 cut(s) 60, 131, 869, 882
AoxI GGCC 6 cut(s) 120, 450, 539, 853, 894, 974
ApeKI GCWGC 1 cut(s) 496
AspS9I GGNCC 5 cut(s) 120, 279, 297, 450, 556
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 740
AvaII GGWCC 3 cut(s) 279, 297, 556
BalI TGGCCA 1 cut(s) 855
BamHI GGATCC 1 cut(s) 874
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 65, 845
BceAI ACGGC 1 cut(s) 989
BciT130I CCWGG 3 cut(s) 302, 469, 938
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 857
BfaI CTAG 4 cut(s) 183, 242, 294, 1036
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
Bme1390I CCNGG 4 cut(s) 283, 302, 469, 938
Bme18I GGWCC 3 cut(s) 279, 297, 556
BmgT120I GGNCC 5 cut(s) 120, 279, 297, 450, 556
BmiI GGNNCC 5 cut(s) 280, 299, 451, 557, 876
BmrFI CCNGG 4 cut(s) 283, 302, 469, 938
BmsI GCATC 2 cut(s) 48, 156
Bpu10I CCTNAGC 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 283
Bsa29I ATCGAT 2 cut(s) 250, 987
BsaJI CCNNGG 6 cut(s) 214, 282, 300, 467, 536, 897
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 537, 702, 892
Bse1I ACTGG 1 cut(s) 954
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 3 cut(s) 302, 469, 938
BseCI ATCGAT 2 cut(s) 250, 987
BseDI CCNNGG 6 cut(s) 214, 282, 300, 467, 536, 897
BseGI GGATG 2 cut(s) 292, 589
BseLI CCNNNNNNNGG 3 cut(s) 537, 702, 892
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 954
BseRI GAGGAG 1 cut(s) 819
BseXI GCAGC 1 cut(s) 508
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 6 cut(s) 122, 452, 541, 855, 896, 976
BshVI ATCGAT 2 cut(s) 250, 987
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 282
BsiWI CGTACG 1 cut(s) 1006
BslFI GGGAC 6 cut(s) 283, 292, 326, 569, 581, 685
BslI CCNNNNNNNGG 3 cut(s) 537, 702, 892
BsmAI GTCTC 1 cut(s) 857
BsmFI GGGAC 6 cut(s) 283, 292, 326, 569, 581, 685
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 6 cut(s) 122, 452, 541, 855, 896, 976
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 6 cut(s) 52, 136, 172, 247, 874, 984
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 1 cut(s) 528
BspANI GGCC 6 cut(s) 122, 452, 541, 855, 896, 976
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 2 cut(s) 250, 987
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 5 cut(s) 280, 299, 451, 557, 876
BspPI GGATC 4 cut(s) 60, 131, 869, 882
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 1 cut(s) 954
BssECI CCNNGG 6 cut(s) 214, 282, 300, 467, 536, 897
BssMI GATC 6 cut(s) 52, 136, 172, 247, 874, 984
BssT1I CCWWGG 2 cut(s) 214, 897
Bst2UI CCWGG 3 cut(s) 302, 469, 938
Bst4CI ACNGT 2 cut(s) 621, 962
Bst6I CTCTTC 1 cut(s) 792
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 3 cut(s) 108, 639, 887
BstDSI CCRYGG 1 cut(s) 214
BstENI CCTNNNNNAGG 3 cut(s) 535, 700, 890
BstF5I GGATG 2 cut(s) 292, 589
BstKTI GATC 6 cut(s) 55, 139, 175, 250, 877, 987
BstMAI GTCTC 1 cut(s) 857
BstMBI GATC 6 cut(s) 52, 136, 172, 247, 874, 984
BstMCI CGRYCG 1 cut(s) 250
BstNI CCWGG 3 cut(s) 302, 469, 938
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 4 cut(s) 281, 300, 467, 936
BstV1I GCAGC 1 cut(s) 508
BstX2I RGATCY 2 cut(s) 52, 874
BstYI RGATCY 2 cut(s) 52, 874
Bsu15I ATCGAT 2 cut(s) 250, 987
BsuRI GGCC 6 cut(s) 122, 452, 541, 855, 896, 976
BsuTUI ATCGAT 2 cut(s) 250, 987
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 2 cut(s) 292, 589
BtsIMutI CAGTG 2 cut(s) 617, 961
Cac8I GCNNGC 1 cut(s) 501
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 5 cut(s) 120, 279, 297, 450, 556
ClaI ATCGAT 2 cut(s) 250, 987
Csp6I GTAC 2 cut(s) 162, 1007
CviAII CATG 8 cut(s) 176, 206, 215, 274, 404, 700, 842, 929
CviQI GTAC 2 cut(s) 162, 1007
DdeI CTNAG 3 cut(s) 108, 639, 887
DpnI GATC 6 cut(s) 54, 138, 174, 249, 876, 986
DpnII GATC 6 cut(s) 52, 136, 172, 247, 874, 984
EaeI YGGCCR 1 cut(s) 853
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 214, 897
Eco147I AGGCCT 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 3 cut(s) 279, 297, 556
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 675, 900
EcoICRI GAGCTC 1 cut(s) 112
EcoNI CCTNNNNNAGG 3 cut(s) 535, 700, 890
EcoO109I RGGNCCY 2 cut(s) 297, 556
EcoRII CCWGG 3 cut(s) 300, 467, 936
EcoT14I CCWWGG 2 cut(s) 214, 897
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 214, 897
FaeI CATG 8 cut(s) 179, 209, 218, 277, 407, 703, 845, 932
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 6 cut(s) 283, 292, 326, 569, 581, 685
FatI CATG 8 cut(s) 175, 205, 214, 273, 403, 699, 841, 928
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 2 cut(s) 299, 596
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 4 cut(s) 183, 242, 294, 1036
GluI GCNGC 1 cut(s) 497
HaeIII GGCC 6 cut(s) 122, 452, 541, 855, 896, 976
HapII CCGG 1 cut(s) 282
Hin1II CATG 8 cut(s) 179, 209, 218, 277, 407, 703, 845, 932
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 1 cut(s) 458
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 3 cut(s) 211, 688, 736
Hpy188I TCNGA 3 cut(s) 109, 537, 721
Hpy188III TCNNGA 6 cut(s) 176, 242, 311, 355, 766, 878
Hpy8I GTNNAC 3 cut(s) 211, 688, 736
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 2 cut(s) 621, 962
HpyF3I CTNAG 3 cut(s) 108, 639, 887
Hsp92II CATG 8 cut(s) 179, 209, 218, 277, 407, 703, 845, 932
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 6 cut(s) 52, 136, 172, 247, 874, 984
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 2 cut(s) 48, 156
MaeI CTAG 4 cut(s) 183, 242, 294, 1036
MaeIII GTNAC 4 cut(s) 218, 427, 710, 956
MalI GATC 6 cut(s) 54, 138, 174, 249, 876, 986
MboI GATC 6 cut(s) 52, 136, 172, 247, 874, 984
MboII GAAGA 4 cut(s) 16, 512, 668, 809
MflI RGATCY 2 cut(s) 52, 874
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 855
MluCI AATT 6 cut(s) 94, 130, 157, 188, 819, 1011
MluNI TGGCCA 1 cut(s) 855
MlyI GAGTC 1 cut(s) 467
Mox20I TGGCCA 1 cut(s) 855
MscI TGGCCA 1 cut(s) 855
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 4 cut(s) 348, 408, 846, 946
Msp20I TGGCCA 1 cut(s) 855
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 4 cut(s) 283, 302, 469, 938
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 3 cut(s) 302, 469, 938
NciI CCSGG 1 cut(s) 283
NcoI CCATGG 1 cut(s) 214
NdeI CATATG 1 cut(s) 829
NdeII GATC 6 cut(s) 52, 136, 172, 247, 874, 984
NlaIII CATG 8 cut(s) 179, 209, 218, 277, 407, 703, 845, 932
NlaIV GGNNCC 5 cut(s) 280, 299, 451, 557, 876
NmuCI GTSAC 2 cut(s) 427, 956
NspI RCATGY 1 cut(s) 209
PagI TCATGA 1 cut(s) 175
PceI AGGCCT 1 cut(s) 541
PciI ACATGT 1 cut(s) 205
PctI GAATGC 1 cut(s) 20
Pfl23II CGTACG 1 cut(s) 1006
PflFI GACNNNGTC 1 cut(s) 593
PkrI GCNGC 1 cut(s) 498
Ple19I CGATCG 1 cut(s) 250
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PpuMI RGGWCCY 2 cut(s) 297, 556
PscI ACATGT 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 114
Psp5II RGGWCCY 2 cut(s) 297, 556
Psp6I CCWGG 3 cut(s) 300, 467, 936
PspGI CCWGG 3 cut(s) 300, 467, 936
PspLI CGTACG 1 cut(s) 1006
PspN4I GGNNCC 5 cut(s) 280, 299, 451, 557, 876
PspPI GGNCC 5 cut(s) 120, 279, 297, 450, 556
PspPPI RGGWCCY 2 cut(s) 297, 556
PsuI RGATCY 2 cut(s) 52, 874
PsyI GACNNNGTC 1 cut(s) 593
PvuI CGATCG 1 cut(s) 250
RsaI GTAC 2 cut(s) 163, 1008
RsaNI GTAC 2 cut(s) 162, 1007
RseI CAYNNNNRTG 4 cut(s) 348, 408, 846, 946
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 6 cut(s) 52, 136, 172, 247, 874, 984
Sau96I GGNCC 5 cut(s) 120, 279, 297, 450, 556
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 4 cut(s) 283, 302, 469, 938
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 2 cut(s) 48, 156
SinI GGWCC 3 cut(s) 279, 297, 556
SmiMI CAYNNNNRTG 4 cut(s) 348, 408, 846, 946
Sse9I AATT 6 cut(s) 94, 130, 157, 188, 819, 1011
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 1 cut(s) 528
SspMI CTAG 4 cut(s) 183, 242, 294, 1036
SstI GAGCTC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 4 cut(s) 281, 300, 467, 936
StyI CCWWGG 2 cut(s) 214, 897
TaaI ACNGT 2 cut(s) 621, 962
TaqI TCGA 2 cut(s) 250, 987
TasI AATT 6 cut(s) 94, 130, 157, 188, 819, 1011
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 624, 961
TseFI GTSAC 2 cut(s) 427, 956
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 2 cut(s) 427, 956
TspDTI ATGAA 6 cut(s) 182, 262, 303, 420, 512, 810
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 2 cut(s) 624, 961
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 3 cut(s) 279, 297, 556
XagI CCTNNNNNAGG 3 cut(s) 535, 700, 890
XbaI TCTAGA 1 cut(s) 241
XceI RCATGY 1 cut(s) 209
XspI CTAG 4 cut(s) 183, 242, 294, 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.