Rh6AG049200

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
7126268 .. 7127750
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG049200.1

Sequence Viewer

Length: 1071 bp
ATGCCATCTAAAGTCTTGTACTCGTTGCTTCCATGTTTGACAAAGAAGGAAAAAGATGCCAATGGATCATATTTGCTTAATGGAAGCATCTTATTAGAAGATCTCATTGCCTCTAGTGATGGAAAATTAACTAATCCTATTCGCCACTACTCAGCTGATGAACTCATCAAGGCAACCAATAACTTTCATTCTTCTTGCCTTGTACTAGAGAATGCATTATACAATATATTCACCGGATTTTTAGACAACCGATTAGTTATCATTAAGAAGGAAGGGCGGAGGGATGACTCCTACTGCAATTTCGACCAAGCCAAGAATGAGGTCATTCGTGACATTATAATATCAATGCAGATGAGCACTCATAAGAATGTTTTGAAATTGTTGGGCTGCTGCTTAGAGTTCCCCATACCAGCTTTAGTGCTTGAACATGCAGGCAAAGGAGTTCTCAATGCTGTAGGAGGTTTGGGGGTTAATGACTCCTTAAACTGGAAAACTAGATTGCGTGTTGCAAAGCAGCTTGCTAATGCTGTTACATATCTTCATACAGCCTTCCCCAGACCCATCATTCATAGGAACCTAAAACACAGCTGTATTTTTTTGGACGATGAGTTTGTTCCCAAAATCTTTGACTTCTCTGACTCCATAACCATTCCTCCTGAGCAATCACATGTTGAAGATCTTGTGAAAGGGACATTTGGGTACCTTGACCCTGCGTATGCGGAGTCTGAGCGCATTACAGAAAAGACTGATGTTTATAGCTTTGGTGTCATGTTACTTGTTTTCTTGAGTGGACGATATGCTATTCAACGAAATCAAACTGCAGAAAAGTGGGAGTCCCTTGTGTCATATGTAAAATTACATGCTTGTGATGACCAGTTTCAGATGATTGTTGACCCTAAAATACTCGAGGGTTTAGGAGGAGAAGATGAGCAAGCACAAGAAAAGCAGTTGCATGAGTTCCTATCACTGGCATTGTTATGCACTCAAGACAAAAGTGAAGCAAGGCCAGATATGATCGATGTGGCCAAGGAACTTGTACGAATTGAGAAGTCTACCTTTCCTCCTCGCTAG

Protein Analysis

356

Amino Acids

40.14

Weight (kDa)

5.73

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 102 - 314 2.7e-21 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 103 - 298 3.5e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
Acc65I GGTACC 1 cut(s) 699
AccB1I GGYRCC 1 cut(s) 699
AccI GTMKAC 1 cut(s) 1052
AciI CCGC 2 cut(s) 277, 719
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 1023
AfaI GTAC 4 cut(s) 20, 204, 701, 1038
AfiI CCNNNNNNNGG 2 cut(s) 486, 967
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 4 cut(s) 376, 425, 674, 806
AluBI AGCT 5 cut(s) 155, 413, 517, 588, 759
AluI AGCT 5 cut(s) 155, 413, 517, 588, 759
Alw21I GWGCWC 1 cut(s) 359
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 905
AoxI GGCC 2 cut(s) 1004, 1023
ApeKI GCWGC 3 cut(s) 387, 390, 514
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
Asp718I GGTACC 1 cut(s) 699
AspLEI GCGC 1 cut(s) 732
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 905
BalI TGGCCA 1 cut(s) 1025
BanI GGYRCC 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 3 cut(s) 374, 377, 526
BccI CCATC 3 cut(s) 13, 113, 569
BfaI CTAG 4 cut(s) 114, 206, 495, 1069
BfmI CTRYAG 2 cut(s) 453, 819
BglII AGATCT 2 cut(s) 100, 676
BisI GCNGC 3 cut(s) 388, 391, 515
BlsI GCNGC 3 cut(s) 389, 392, 516
BmeT110I CYCGRG 1 cut(s) 905
BmiI GGNNCC 2 cut(s) 575, 701
BmsI GCATC 2 cut(s) 46, 96
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 805, 969
Bsa29I ATCGAT 1 cut(s) 1017
BsaJI CCNNGG 1 cut(s) 1026
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 3 cut(s) 637, 667, 1045
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 967
Bse1I ACTGG 3 cut(s) 491, 874, 972
Bse3DI GCAATG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 1017
BseDI CCNNGG 1 cut(s) 1026
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 486, 967
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 3 cut(s) 165, 648, 717
BseNI ACTGG 3 cut(s) 491, 874, 972
BseRI GAGGAG 2 cut(s) 933, 1053
BseXI GCAGC 3 cut(s) 374, 377, 526
BshFI GGCC 2 cut(s) 1006, 1025
BshNI GGYRCC 1 cut(s) 699
BshVI ATCGAT 1 cut(s) 1017
BsiHKAI GWGCWC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 703, 820
BslI CCNNNNNNNGG 2 cut(s) 486, 967
BsmFI GGGAC 2 cut(s) 703, 820
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 1006, 1025
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 4 cut(s) 65, 100, 676, 1014
BspACI CCGC 2 cut(s) 277, 719
BspANI GGCC 2 cut(s) 1006, 1025
BspCNI CTCAG 3 cut(s) 164, 649, 718
BspDI ATCGAT 1 cut(s) 1017
BspLI GGNNCC 2 cut(s) 575, 701
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 699
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 3 cut(s) 491, 874, 972
BssECI CCNNGG 1 cut(s) 1026
BssMI GATC 4 cut(s) 65, 100, 676, 1014
BssT1I CCWWGG 1 cut(s) 1026
BstC8I GCNNGC 3 cut(s) 433, 519, 933
BstDEI CTNAG 4 cut(s) 151, 394, 657, 726
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 4 cut(s) 68, 103, 679, 1017
BstMBI GATC 4 cut(s) 65, 100, 676, 1014
BstNSI RCATGY 3 cut(s) 431, 671, 863
BstSFI CTRYAG 2 cut(s) 453, 819
BstV1I GCAGC 3 cut(s) 374, 377, 526
BstX2I RGATCY 2 cut(s) 100, 676
BstYI RGATCY 2 cut(s) 100, 676
Bsu15I ATCGAT 1 cut(s) 1017
BsuRI GGCC 2 cut(s) 1006, 1025
BsuTUI ATCGAT 1 cut(s) 1017
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 965
Cac8I GCNNGC 3 cut(s) 433, 519, 933
CfoI GCGC 1 cut(s) 732
ClaI ATCGAT 1 cut(s) 1017
Csp6I GTAC 4 cut(s) 19, 203, 700, 1037
CviAII CATG 6 cut(s) 33, 428, 668, 769, 860, 953
CviQI GTAC 4 cut(s) 19, 203, 700, 1037
DdeI CTNAG 4 cut(s) 151, 394, 657, 726
DpnI GATC 4 cut(s) 67, 102, 678, 1016
DpnII GATC 4 cut(s) 65, 100, 676, 1014
EaeI YGGCCR 1 cut(s) 1023
EciI GGCGGA 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 1026
Eco88I CYCGRG 1 cut(s) 905
EcoT14I CCWWGG 1 cut(s) 1026
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 1026
FaeI CATG 6 cut(s) 36, 431, 671, 772, 863, 956
FalI AAGNNNNNCTT 1 cut(s) 1040
FaqI GGGAC 2 cut(s) 703, 820
FatI CATG 6 cut(s) 32, 427, 667, 768, 859, 952
FauNDI CATATG 1 cut(s) 847
FblI GTMKAC 1 cut(s) 1052
Fnu4HI GCNGC 3 cut(s) 388, 391, 515
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 388, 391, 515
FspBI CTAG 4 cut(s) 114, 206, 495, 1069
GlaI GCGC 1 cut(s) 731
GluI GCNGC 3 cut(s) 388, 391, 515
HaeIII GGCC 2 cut(s) 1006, 1025
HapII CCGG 1 cut(s) 234
HhaI GCGC 1 cut(s) 732
Hin1II CATG 6 cut(s) 36, 431, 671, 772, 863, 956
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HinfI GANTC 5 cut(s) 287, 476, 638, 722, 833
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 3 cut(s) 791, 892, 1053
Hpy188I TCNGA 3 cut(s) 637, 727, 882
Hpy188III TCNNGA 4 cut(s) 329, 656, 784, 986
Hpy8I GTNNAC 3 cut(s) 791, 892, 1053
HpyAV CCTTC 4 cut(s) 40, 262, 266, 559
HpyCH4V TGCA 8 cut(s) 215, 297, 349, 431, 509, 821, 952, 981
HpyF3I CTNAG 4 cut(s) 151, 394, 657, 726
Hsp92II CATG 6 cut(s) 36, 431, 671, 772, 863, 956
HspAI GCGC 1 cut(s) 730
KpnI GGTACC 1 cut(s) 703
Kzo9I GATC 4 cut(s) 65, 100, 676, 1014
Lsp1109I GCAGC 3 cut(s) 374, 377, 526
LweI GCATC 2 cut(s) 46, 96
MaeI CTAG 4 cut(s) 114, 206, 495, 1069
MaeIII GTNAC 3 cut(s) 329, 529, 771
MalI GATC 4 cut(s) 67, 102, 678, 1016
MboI GATC 4 cut(s) 65, 100, 676, 1014
MboII GAAGA 5 cut(s) 110, 183, 530, 686, 935
MflI RGATCY 2 cut(s) 100, 676
MhlI GDGCHC 1 cut(s) 359
MlsI TGGCCA 1 cut(s) 1025
MluCI AATT 5 cut(s) 125, 298, 377, 854, 1041
MluNI TGGCCA 1 cut(s) 1025
MlyI GAGTC 5 cut(s) 281, 470, 632, 731, 842
MnlI CCTC 8 cut(s) 121, 273, 313, 452, 663, 901, 911, 1071
Mox20I TGGCCA 1 cut(s) 1025
Mph1103I ATGCAT 1 cut(s) 217
MscI TGGCCA 1 cut(s) 1025
MseI TTAA 5 cut(s) 78, 128, 264, 471, 482
MslI CAYNNNNRTG 3 cut(s) 366, 864, 976
Msp20I TGGCCA 1 cut(s) 1025
MspA1I CMGCKG 2 cut(s) 155, 588
MspI CCGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 217
NdeI CATATG 1 cut(s) 847
NdeII GATC 4 cut(s) 65, 100, 676, 1014
NlaIII CATG 6 cut(s) 36, 431, 671, 772, 863, 956
NlaIV GGNNCC 2 cut(s) 575, 701
NmuCI GTSAC 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 3 cut(s) 431, 671, 863
PaeR7I CTCGAG 1 cut(s) 905
PciI ACATGT 1 cut(s) 667
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 3 cut(s) 389, 392, 516
PleI GAGTC 5 cut(s) 281, 470, 632, 730, 841
PpsI GAGTC 5 cut(s) 281, 470, 632, 730, 841
PscI ACATGT 1 cut(s) 667
PsiI TTATAA 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 575, 701
PspXI VCTCGAGB 1 cut(s) 905
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 2 cut(s) 100, 676
PvuII CAGCTG 2 cut(s) 155, 588
RsaI GTAC 4 cut(s) 20, 204, 701, 1038
RsaNI GTAC 4 cut(s) 19, 203, 700, 1037
RseI CAYNNNNRTG 3 cut(s) 366, 864, 976
SaqAI TTAA 5 cut(s) 78, 128, 264, 471, 482
SatI GCNGC 3 cut(s) 388, 391, 515
Sau3AI GATC 4 cut(s) 65, 100, 676, 1014
SchI GAGTC 5 cut(s) 281, 470, 632, 731, 842
SduI GDGCHC 1 cut(s) 359
SfaNI GCATC 2 cut(s) 46, 96
SfcI CTRYAG 2 cut(s) 453, 819
Sfr274I CTCGAG 1 cut(s) 905
SlaI CTCGAG 1 cut(s) 905
SmiMI CAYNNNNRTG 3 cut(s) 366, 864, 976
SmlI CTYRAG 3 cut(s) 784, 905, 984
SmoI CTYRAG 3 cut(s) 784, 905, 984
Sse9I AATT 5 cut(s) 125, 298, 377, 854, 1041
SsiI CCGC 2 cut(s) 277, 719
SspMI CTAG 4 cut(s) 114, 206, 495, 1069
StyI CCWWGG 1 cut(s) 1026
TaqI TCGA 3 cut(s) 303, 906, 1017
TasI AATT 5 cut(s) 125, 298, 377, 854, 1041
TatI WGTACW 2 cut(s) 18, 202
Tru1I TTAA 5 cut(s) 78, 128, 264, 471, 482
Tru9I TTAA 5 cut(s) 78, 128, 264, 471, 482
TscAI CASTG 1 cut(s) 972
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 3 cut(s) 387, 390, 514
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 174, 176, 530, 557
TspRI CASTG 1 cut(s) 972
XceI RCATGY 3 cut(s) 431, 671, 863
XhoI CTCGAG 1 cut(s) 905
XmiI GTMKAC 1 cut(s) 1052
XspI CTAG 4 cut(s) 114, 206, 495, 1069
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.