Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

2741246 .. 2741647

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03431.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCAGTCACATGTTGATGCTGATGTGATATATACACCTGGGTATGTTGACCCTAGCTACTGGGCCAATCACAGCATTTCAGAGAAGACTGATGTTTATACTTTTGGTATTGTATTACTTGTATTCCTAACAGGACGAGAAGCAGTGGTAAGAAATGAGGCAGGAGAATATGAGTACCTTAAACCATATGTGAAATCACATGATTCTGATGGCCAAGTTCATATCATTGTGGATCCCAAAATATCTATGGAGGTAGGGGAAGCTGAGCCAGCACACCAGCAATTGCTTGATTTCCTAACACTGGCATTGTTATGCACTCAAGATAAAAGTGAAGCAAGGCCAGAAATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAATTGTATCTCAAGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

4.6

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	2 cut(s)	227, 240
AcoI	YGGCCR	2 cut(s)	211, 357
AfaI	GTAC	2 cut(s)	176, 372
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	57, 263
AluI	AGCT	2 cut(s)	57, 263
AlwI	GGATC	2 cut(s)	227, 240
AoxI	GGCC	4 cut(s)	63, 211, 338, 357
AspS9I	GGNCC	1 cut(s)	63
BalI	TGGCCA	2 cut(s)	213, 359
BamHI	GGATCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	92
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	39
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	1 cut(s)	397
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	303, 376
Bsa29I	ATCGAT	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	65, 306
BseBI	CCWGG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	65, 306
BshFI	GGCC	4 cut(s)	65, 213, 340, 359
BshVI	ATCGAT	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	301
BsnI	GGCC	4 cut(s)	65, 213, 340, 359
Bsp143I	GATC	2 cut(s)	232, 348
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	4 cut(s)	65, 213, 340, 359
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	227, 240
BsrI	ACTGG	2 cut(s)	65, 306
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	232, 348
Bst2UI	CCWGG	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	235, 351
BstMBI	GATC	2 cut(s)	232, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	65, 213, 340, 359
BsuTUI	ATCGAT	1 cut(s)	351
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 299
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	63
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	175, 371
CviAII	CATG	2 cut(s)	11, 200
CviJI	RGCY	8 cut(s)	57, 65, 213, 263, 268, 340, 359, 399
CviKI_1	RGCY	8 cut(s)	57, 65, 213, 263, 268, 340, 359, 399
CviQI	GTAC	2 cut(s)	175, 371
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	234, 350
DpnII	GATC	2 cut(s)	232, 348
EaeI	YGGCCR	2 cut(s)	211, 357
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	14, 203
FatI	CATG	2 cut(s)	10, 199
FauNDI	CATATG	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	65, 213, 340, 359
Hin1II	CATG	2 cut(s)	14, 203
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	82, 208
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	4, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	14, 203
Kzo9I	GATC	2 cut(s)	232, 348
LpnPI	CCDG	9 cut(s)	24, 46, 51, 117, 147, 282, 287, 290, 354
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	2 cut(s)	234, 350
MboI	GATC	2 cut(s)	232, 348
MboII	GAAGA	1 cut(s)	97
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	1 cut(s)	232
MlsI	TGGCCA	2 cut(s)	213, 359
MluCI	AATT	3 cut(s)	281, 375, 382
MluNI	TGGCCA	2 cut(s)	213, 359
MnlI	CCTC	2 cut(s)	151, 244
Mox20I	TGGCCA	2 cut(s)	213, 359
MscI	TGGCCA	2 cut(s)	213, 359
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	2 cut(s)	15, 310
Msp20I	TGGCCA	2 cut(s)	213, 359
MspR9I	CCNGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	2 cut(s)	232, 348
NlaIII	CATG	2 cut(s)	14, 203
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	14
PciI	ACATGT	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	398
PscI	ACATGT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	176, 372
RsaNI	GTAC	2 cut(s)	175, 371
RseI	CAYNNNNRTG	2 cut(s)	15, 310
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	2 cut(s)	232, 348
Sau96I	GGNCC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	5 cut(s)	40, 59, 180, 255, 265
SfaNI	GCATC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	15, 310
SmlI	CTYRAG	2 cut(s)	318, 391
SmoI	CTYRAG	2 cut(s)	318, 391
Sse9I	AATT	3 cut(s)	281, 375, 382
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	37
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	281, 375, 382
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	150, 306
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	150, 306
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.