Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

63667027 .. 63668991

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGCACTCACAAGAATGTTTTGAAATTGTTGGGCTGCTGTTTAGAGTTCCCCATACCAGCTCTGGTGCATGAGTATGCAACGCAAGGCTGTGTTCTTAACGACGAAGGAGGTTTCCGGTCTAATGAATCTCTACCATGGAAAACTAGACTACGTATTGCAAAGCAGCTGGCTAGTGCAATTACAGATCTACATACAGCCTTTCCAAGATCTATCATTCACAGGCATCTGAGGCCCCATTGTATTTTCTTGGATGATGACTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACCATTCCTCCTGAGAAATCCCATGTTCAAGATGTTGTGATAAAAGGGACAATGTGGTGTACCTTAGCCCTGAGTTTCTTGATTCTGTTTACATTTCAGAAAAATTTGATGTTTATAGCTTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

16.06

Weight (kDa)

8.25

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 107	1.6e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 110	1.1e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	400
AfaI	GTAC	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	25, 326
AluBI	AGCT	3 cut(s)	62, 169, 416
AluI	AGCT	3 cut(s)	62, 169, 416
Alw21I	GWGCWC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	36, 166
ApoI	RAATTY	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	23, 178
BfaI	CTAG	2 cut(s)	147, 174
BglII	AGATCT	2 cut(s)	187, 209
BisI	GCNGC	2 cut(s)	37, 167
BlsI	GCNGC	2 cut(s)	38, 168
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	236
BmsI	GCATC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	3 cut(s)	221, 300, 359
BseXI	GCAGC	2 cut(s)	23, 178
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	187, 209
Bsp19I	CCATGG	1 cut(s)	137
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	3 cut(s)	222, 301, 360
BspLI	GGNNCC	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	2 cut(s)	187, 209
BssT1I	CCWWGG	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	230, 309, 361, 368
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	190, 212
BstMBI	GATC	2 cut(s)	187, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstSNI	TACGTA	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	23, 178
BstX2I	RGATCY	2 cut(s)	187, 209
BstYI	RGATCY	2 cut(s)	187, 209
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	3 cut(s)	71, 138, 320
CviJI	RGCY	9 cut(s)	36, 62, 90, 169, 173, 200, 235, 365, 416
CviKI_1	RGCY	9 cut(s)	36, 62, 90, 169, 173, 200, 235, 365, 416
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	4 cut(s)	230, 309, 361, 368
DpnI	GATC	2 cut(s)	189, 211
DpnII	GATC	2 cut(s)	187, 209
Eco105I	TACGTA	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	74, 141, 323
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	3 cut(s)	70, 137, 319
Fnu4HI	GCNGC	2 cut(s)	37, 167
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	37, 167
FspBI	CTAG	2 cut(s)	147, 174
GluI	GCNGC	2 cut(s)	37, 167
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	74, 141, 323
HinfI	GANTC	2 cut(s)	128, 379
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	357, 387
Hpy188I	TCNGA	2 cut(s)	231, 396
Hpy188III	TCNNGA	3 cut(s)	308, 326, 376
Hpy8I	GTNNAC	2 cut(s)	357, 387
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	70, 80, 161, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	4 cut(s)	230, 309, 361, 368
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	74, 141, 323
Kzo9I	GATC	2 cut(s)	187, 209
LpnPI	CCDG	7 cut(s)	50, 72, 131, 155, 208, 321, 380
Lsp1109I	GCAGC	2 cut(s)	23, 178
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	147, 174
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	189, 211
MboI	GATC	2 cut(s)	187, 209
MflI	RGATCY	2 cut(s)	187, 209
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	26, 180, 272, 400
MnlI	CCTC	3 cut(s)	104, 225, 315
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	2 cut(s)	15, 75
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	187, 209
NlaIII	CATG	3 cut(s)	74, 141, 323
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	128, 379
PkrI	GCNGC	2 cut(s)	38, 168
Ppu21I	YACGTR	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	187, 209
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	2 cut(s)	15, 75
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	37, 167
Sau3AI	GATC	2 cut(s)	187, 209
Sau96I	GGNCC	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	64, 115, 157, 171, 362, 418
SfaNI	GCATC	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	15, 75
SnaBI	TACGTA	1 cut(s)	155
Sse9I	AATT	4 cut(s)	26, 180, 272, 400
SspMI	CTAG	2 cut(s)	147, 174
StyI	CCWWGG	1 cut(s)	137
TaiI	ACGT	1 cut(s)	157
TasI	AATT	4 cut(s)	26, 180, 272, 400
TfiI	GAWTC	2 cut(s)	128, 379
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	36, 166
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	141
XapI	RAATTY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	2 cut(s)	147, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.