Rh6AG049100

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
7117510 .. 7118818
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG049100.1

Sequence Viewer

Length: 948 bp
ATGCCATCCAATGTCTTGAACTCGTTGCTTCCATGTTTGAGAAAGGAGGGAGAAGATGCTGATAGATCATTCTTGGATAATGGAAGCCAATTATTAGAGGATCTTATTGCTTCTTGGGATGGGAAATCTAATACTATTCGCCATTACTCTGCTCAAGAACTCATCAGGGCAACCAATAACTTTGATCCTTCTGGCATTATACCGGAGTGTTCATTCTATTATAAAGGTTTTCTGGACAACCGATTAATCATCATTAAGAAGAGAGGGGGGAGGGATGGGCCCTATAGGAATTTCAAGAGGGTGAGGGAGGAGGCTATTCGTGATATTATAATTTCAATGCAGATGAGCACTCACAAGAATGTTTTGAAATTGTTGGGCTGCTGTTTAGAGTTCCCTATACCAGCTCTGGTGCATGAGTATGCAACGCAAGGCTGTGTTCTTAACGACAAAGGAGGTTTCCGGTCTAATGAATCTCTACCATGGAAAACTAGGCTACGTATTGCAAAGCAGCTGGCTAGTGCAATTACATATCTACATACAGCCTTTCCAAGACCTATCATTCACAGGCATCTGAGGCCCCATTGTATTTTCTTGGATGATGACTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACCATTCCTCCTGAGAAATCCCATGTTCAAGAAGTTGTGATAAAAGGGACAATGTGGTACCTTAGCCCTGAGTTTCTTGATTCTGGTTACATTTCAGAAAAATTTGATGTTTATAGCTTTGGTGTGATTTTACTTGGCTTCTTGGTGGGACGGAAACTTTTGGCAGGACATGACGACCTTATAAAATCTGTGAAATTGCATGCTTGTGACGGCCAGATTCAAACAATTGTTGATCCTAAAATACTCGAGGAGTTAGGGGGAGGTAATGAGCCAACACAACTTCAGTTGCATGATTTCCTAGCACTATAG

Protein Analysis

315

Amino Acids

35.72

Weight (kDa)

6.83

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 103 - 274 2.8e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 104 - 258 1.1e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 222, 329, 821
Acc65I GGTACC 1 cut(s) 696
AccB1I GGYRCC 1 cut(s) 696
AclWI GGATC 3 cut(s) 108, 179, 866
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 2 cut(s) 289, 740
AcuI CTGAAG 1 cut(s) 905
AfaI GTAC 1 cut(s) 698
AgsI TTSAA 6 cut(s) 19, 295, 336, 367, 668, 860
AluBI AGCT 3 cut(s) 404, 511, 756
AluI AGCT 3 cut(s) 404, 511, 756
Alw21I GWGCWC 1 cut(s) 350
AlwI GGATC 3 cut(s) 108, 179, 866
Ama87I CYCGRG 1 cut(s) 884
AoxI GGCC 3 cut(s) 278, 575, 850
ApaI GGGCCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 378, 508
ApoI RAATTY 2 cut(s) 289, 740
AseI ATTAAT 1 cut(s) 245
Asp718I GGTACC 1 cut(s) 696
AspS9I GGNCC 3 cut(s) 278, 279, 576
AsuHPI GGTGA 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 884
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 696
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 365, 520
BccI CCATC 3 cut(s) 13, 113, 269
BceAI ACGGC 1 cut(s) 865
BfaI CTAG 3 cut(s) 489, 516, 938
BfmI CTRYAG 2 cut(s) 283, 944
BisI GCNGC 2 cut(s) 379, 509
BlsI GCNGC 2 cut(s) 380, 510
BmeT110I CYCGRG 1 cut(s) 884
BmgT120I GGNCC 3 cut(s) 278, 279, 576
BmiI GGNNCC 3 cut(s) 280, 578, 698
BmsI GCATC 2 cut(s) 46, 577
Bpu10I CCTNAGC 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 479
BsaWI WCCGGW 2 cut(s) 202, 459
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 4 cut(s) 5, 124, 280, 601
BseMII CTCAG 3 cut(s) 563, 642, 699
BseRI GAGGAG 2 cut(s) 323, 902
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 2 cut(s) 365, 520
BshFI GGCC 3 cut(s) 280, 577, 852
BshNI GGYRCC 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 884
BsiSI CCGG 2 cut(s) 203, 460
BslFI GGGAC 2 cut(s) 700, 801
BsmFI GGGAC 2 cut(s) 700, 801
BsnI GGCC 3 cut(s) 280, 577, 852
BsoBI CYCGRG 1 cut(s) 884
Bsp120I GGGCCC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 282, 350
Bsp143I GATC 4 cut(s) 65, 100, 184, 871
Bsp19I CCATGG 1 cut(s) 479
BspANI GGCC 3 cut(s) 280, 577, 852
BspCNI CTCAG 3 cut(s) 564, 643, 700
BspLI GGNNCC 3 cut(s) 280, 578, 698
BspPI GGATC 3 cut(s) 108, 179, 866
BspT107I GGYRCC 1 cut(s) 696
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 4 cut(s) 65, 100, 184, 871
BssT1I CCWWGG 1 cut(s) 479
Bst6I CTCTTC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 513, 840
BstDEI CTNAG 4 cut(s) 572, 651, 701, 708
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 4 cut(s) 5, 124, 280, 601
BstKTI GATC 4 cut(s) 68, 103, 187, 874
BstMBI GATC 4 cut(s) 65, 100, 184, 871
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNSI RCATGY 1 cut(s) 842
BstSFI CTRYAG 2 cut(s) 283, 944
BstSLI GKGCMC 1 cut(s) 282
BstSNI TACGTA 1 cut(s) 497
BstV1I GCAGC 2 cut(s) 365, 520
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 280, 577, 852
BtgI CCRYGG 1 cut(s) 479
BtsCI GGATG 4 cut(s) 5, 124, 280, 601
Cac8I GCNNGC 2 cut(s) 513, 840
Cfr13I GGNCC 3 cut(s) 278, 279, 576
Csp6I GTAC 1 cut(s) 697
CviAII CATG 7 cut(s) 33, 413, 480, 662, 809, 839, 929
CviQI GTAC 1 cut(s) 697
DdeI CTNAG 4 cut(s) 572, 651, 701, 708
DpnI GATC 4 cut(s) 67, 102, 186, 873
DpnII GATC 4 cut(s) 65, 100, 184, 871
EaeI YGGCCR 1 cut(s) 850
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco105I TACGTA 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 905
Eco88I CYCGRG 1 cut(s) 884
EcoO109I RGGNCCY 2 cut(s) 279, 576
EcoT14I CCWWGG 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 7 cut(s) 36, 416, 483, 665, 812, 842, 932
FaqI GGGAC 2 cut(s) 700, 801
FatI CATG 7 cut(s) 32, 412, 479, 661, 808, 838, 928
Fnu4HI GCNGC 2 cut(s) 379, 509
FokI GGATG 3 cut(s) 131, 287, 608
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 379, 509
FspBI CTAG 3 cut(s) 489, 516, 938
GluI GCNGC 2 cut(s) 379, 509
HaeIII GGCC 3 cut(s) 280, 577, 852
HapII CCGG 2 cut(s) 203, 460
Hin1II CATG 7 cut(s) 36, 416, 483, 665, 812, 842, 932
HinfI GANTC 3 cut(s) 470, 719, 856
HpaII CCGG 2 cut(s) 203, 460
HphI GGTGA 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 573, 736
Hpy188III TCNNGA 8 cut(s) 16, 155, 233, 295, 320, 650, 668, 716
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 7 cut(s) 340, 412, 422, 503, 521, 838, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 4 cut(s) 572, 651, 701, 708
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 7 cut(s) 36, 416, 483, 665, 812, 842, 932
KpnI GGTACC 1 cut(s) 700
Kzo9I GATC 4 cut(s) 65, 100, 184, 871
Lsp1109I GCAGC 2 cut(s) 365, 520
LweI GCATC 2 cut(s) 46, 577
MaeI CTAG 3 cut(s) 489, 516, 938
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 3 cut(s) 620, 725, 845
MalI GATC 4 cut(s) 67, 102, 186, 873
MboI GATC 4 cut(s) 65, 100, 184, 871
MboII GAAGA 2 cut(s) 65, 271
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 282, 350
MluCI AATT 9 cut(s) 89, 289, 330, 368, 522, 614, 740, 833, 864
MseI TTAA 3 cut(s) 245, 255, 441
MslI CAYNNNNRTG 3 cut(s) 357, 417, 843
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 2 cut(s) 203, 460
MunI CAATTG 1 cut(s) 864
MwoI GCNNNNNNNGC 1 cut(s) 574
NcoI CCATGG 1 cut(s) 479
NdeII GATC 4 cut(s) 65, 100, 184, 871
NlaIII CATG 7 cut(s) 36, 416, 483, 665, 812, 842, 932
NlaIV GGNNCC 3 cut(s) 280, 578, 698
NmuCI GTSAC 2 cut(s) 620, 845
NspI RCATGY 1 cut(s) 842
PaeI GCATGC 1 cut(s) 842
PaeR7I CTCGAG 1 cut(s) 884
PfeI GAWTC 3 cut(s) 470, 719, 856
PkrI GCNGC 2 cut(s) 380, 510
Ppu21I YACGTR 1 cut(s) 497
PshBI ATTAAT 1 cut(s) 245
PsiI TTATAA 3 cut(s) 222, 329, 821
PspN4I GGNNCC 3 cut(s) 280, 578, 698
PspOMI GGGCCC 1 cut(s) 278
PspPI GGNCC 3 cut(s) 278, 279, 576
PspXI VCTCGAGB 1 cut(s) 884
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
RseI CAYNNNNRTG 3 cut(s) 357, 417, 843
SaqAI TTAA 3 cut(s) 245, 255, 441
SatI GCNGC 2 cut(s) 379, 509
Sau3AI GATC 4 cut(s) 65, 100, 184, 871
Sau96I GGNCC 3 cut(s) 278, 279, 576
SduI GDGCHC 2 cut(s) 282, 350
SfaNI GCATC 2 cut(s) 46, 577
SfcI CTRYAG 2 cut(s) 283, 944
Sfr274I CTCGAG 1 cut(s) 884
SlaI CTCGAG 1 cut(s) 884
SmiMI CAYNNNNRTG 3 cut(s) 357, 417, 843
SmlI CTYRAG 2 cut(s) 153, 884
SmoI CTYRAG 2 cut(s) 153, 884
SnaBI TACGTA 1 cut(s) 497
SphI GCATGC 1 cut(s) 842
Sse9I AATT 9 cut(s) 89, 289, 330, 368, 522, 614, 740, 833, 864
SspMI CTAG 3 cut(s) 489, 516, 938
StyI CCWWGG 1 cut(s) 479
TaiI ACGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 885
TasI AATT 9 cut(s) 89, 289, 330, 368, 522, 614, 740, 833, 864
TfiI GAWTC 3 cut(s) 470, 719, 856
Tru1I TTAA 3 cut(s) 245, 255, 441
Tru9I TTAA 3 cut(s) 245, 255, 441
TseFI GTSAC 2 cut(s) 620, 845
TseI GCWGC 2 cut(s) 378, 508
Tsp45I GTSAC 2 cut(s) 620, 845
TspDTI ATGAA 2 cut(s) 201, 483
TspGWI ACGGA 1 cut(s) 805
VspI ATTAAT 1 cut(s) 245
XapI RAATTY 2 cut(s) 289, 740
XceI RCATGY 1 cut(s) 842
XhoI CTCGAG 1 cut(s) 884
XspI CTAG 3 cut(s) 489, 516, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.