Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

6822952 .. 6823928

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCATCCAAATTCTTGGTCTCATTGCTATCATGTTTGAGAAAGGAGGAAATAGATACTCATAGGTCGTCATTCTTGGATAATGGAAGCATATTATTAGAGGATCTCATTGCTTCTTGCAATGGAAAATCTAATCCCATTCGAAATTACTCTGCTGATGAACTCATGAGGGCAACCAACAATTTTGATCCTTCTGGCGTGATGCAACAAGATTCATCATACAAAATGTTCCAGGGTTTTCTTGAGAACCGGTCAGTTATCATTAAAAAGTACTTCACTGTGCATTGGCTTGCTCCGGAGCAAACTAGGTCTATGGCAATTCGAGACATTCGAAGGGAGTTCTCAACTTTGAAGGAGGTTATGGGAATAATGAGTCCCTACCATGGAAAACTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

15.18

Weight (kDa)

7.79

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	295
AclWI	GGATC	2 cut(s)	111, 182
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	25, 318
AlwI	GGATC	2 cut(s)	111, 182
Aor13HI	TCCGGA	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	11
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	249
AsuII	TTCGAA	2 cut(s)	142, 331
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	25, 318
BfaI	CTAG	2 cut(s)	306, 392
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	192
Bpu14I	TTCGAA	2 cut(s)	142, 331
BpuEI	CTTGAG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	232, 382
BsaWI	WCCGGW	2 cut(s)	249, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	249
Bse3DI	GCAATG	3 cut(s)	23, 108, 127
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	232, 382
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	3 cut(s)	23, 108, 127
BshTI	ACCGGT	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	250, 296
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	25, 318
BsmFI	GGGAC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	25
Bsp119I	TTCGAA	2 cut(s)	142, 331
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	103, 187
Bsp19I	CCATGG	1 cut(s)	382
BspEI	TCCGGA	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	165
BspPI	GGATC	2 cut(s)	111, 182
BspT104I	TTCGAA	2 cut(s)	142, 331
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	3 cut(s)	23, 108, 127
BsrFI	RCCGGY	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	232, 382
BssMI	GATC	2 cut(s)	103, 187
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	280
BstBI	TTCGAA	2 cut(s)	142, 331
BstC8I	GCNNGC	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	2 cut(s)	106, 190
BstMAI	GTCTC	2 cut(s)	25, 318
BstMBI	GATC	2 cut(s)	103, 187
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	271
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	3 cut(s)	33, 166, 383
CviJI	RGCY	1 cut(s)	289
CviKI_1	RGCY	1 cut(s)	289
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	2 cut(s)	105, 189
DpnII	GATC	2 cut(s)	103, 187
Eco130I	CCWWGG	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	36, 169, 386
FaiI	YATR	8 cut(s)	34, 63, 92, 167, 220, 314, 362, 384
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	3 cut(s)	32, 165, 382
FspBI	CTAG	2 cut(s)	306, 392
HapII	CCGG	2 cut(s)	250, 296
Hin1II	CATG	3 cut(s)	36, 169, 386
HinfI	GANTC	2 cut(s)	212, 373
HpaII	CCGG	2 cut(s)	250, 296
Hpy188III	TCNNGA	4 cut(s)	166, 242, 296, 323
HpyAV	CCTTC	3 cut(s)	201, 327, 346
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	120, 205, 283
Hsp92II	CATG	3 cut(s)	36, 169, 386
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	103, 187
LmnI	GCTCC	2 cut(s)	298, 298
LpnPI	CCDG	5 cut(s)	180, 218, 245, 263, 309
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	2 cut(s)	306, 392
MalI	GATC	2 cut(s)	105, 189
MboI	GATC	2 cut(s)	103, 187
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	4 cut(s)	11, 145, 181, 318
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	4 cut(s)	40, 94, 162, 349
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	1 cut(s)	264
MspI	CCGG	2 cut(s)	250, 296
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	2 cut(s)	103, 187
NlaIII	CATG	3 cut(s)	36, 169, 386
NspV	TTCGAA	2 cut(s)	142, 331
PagI	TCATGA	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	249
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	103, 187
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	3 cut(s)	68, 311, 360
SfaNI	GCATC	1 cut(s)	192
SfuI	TTCGAA	2 cut(s)	142, 331
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	11, 145, 181, 318
SspMI	CTAG	2 cut(s)	306, 392
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	142, 322, 331
TasI	AATT	4 cut(s)	11, 145, 181, 318
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	174, 204
TspRI	CASTG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	11
XspI	CTAG	2 cut(s)	306, 392
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.