Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

12616117 .. 12616641

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCAAGATTGTTCACCCACTGAAAATAGTCAATTCCCCAGTTCTATACATGTTTATGGTGGTTACAAAATGTTCGGGGGTTTTCTACATGACCGATCAATCATTGTTAAGAAGTTCATGGGGACGGGGGATGAAGCTAAGTCCATGGCCATTCGAGACATTATTATATCAATACAGATGAGCAACCATAAAAATGTTTTGAAACTCTTGGGCTGCTGCTTGGAGATTTCTGTACCAGCTCTTGTTCATGGTAATGAAAATTACTCCGCATTACCATGGAAAACTAGACTGCGTATTGCAAAGCAGCTTGCTAATGCACTTACATATCTCCATACTGCCTTTCCCAGGCCAATCATTCATCGGGATTTAAAACCCAGCTGTATTTTCTTGGGCCATGATTATGTTCCCAAACTCACCAACTTCTTACTTTCCATTTCCATTCCTCCTATGCAGTCTCATGTTGAAGATGATCTGAAAGGGACATTTGGGTACCTTGATCCTTCTTTGCATGTTTGTAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

175

Amino Acids

19.48

Weight (kDa)

8.59

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 152	2.7e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	38 - 167	1.9e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	2 cut(s)	234, 491
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	202, 464
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	4 cut(s)	137, 239, 307, 378
AluI	AGCT	4 cut(s)	137, 239, 307, 378
Alw26I	GTCTC	2 cut(s)	150, 459
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	3 cut(s)	147, 347, 391
ApeKI	GCWGC	3 cut(s)	213, 216, 304
Asp718I	GGTACC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	6, 406
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	200, 203, 316
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	150, 459
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	3 cut(s)	214, 217, 305
BlsI	GCNGC	3 cut(s)	215, 218, 306
Bme1390I	CCNGG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	144, 275, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	3 cut(s)	144, 275, 344
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	200, 203, 316
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	3 cut(s)	149, 349, 393
BshNI	GGYRCC	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	136, 493
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	150, 459
BsmFI	GGGAC	2 cut(s)	136, 493
BsnI	GGCC	3 cut(s)	149, 349, 393
Bsp143I	GATC	3 cut(s)	95, 469, 496
Bsp19I	CCATGG	2 cut(s)	144, 275
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	3 cut(s)	149, 349, 393
BspLI	GGNNCC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	144, 275, 344
BssMI	GATC	3 cut(s)	95, 469, 496
BssT1I	CCWWGG	2 cut(s)	144, 275
Bst2UI	CCWGG	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	2 cut(s)	144, 275
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	98, 472, 499
BstMAI	GTCTC	2 cut(s)	150, 459
BstMBI	GATC	3 cut(s)	95, 469, 496
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	53, 512
BstSCI	CCNGG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	200, 203, 316
BsuRI	GGCC	3 cut(s)	149, 349, 393
BtgI	CCRYGG	2 cut(s)	144, 275
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	233, 490
CviAII	CATG	9 cut(s)	50, 89, 118, 145, 248, 276, 395, 458, 509
CviJI	RGCY	8 cut(s)	137, 149, 213, 239, 307, 349, 378, 393
CviKI_1	RGCY	8 cut(s)	137, 149, 213, 239, 307, 349, 378, 393
CviQI	GTAC	2 cut(s)	233, 490
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	97, 471, 498
DpnII	GATC	3 cut(s)	95, 469, 496
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	144, 275
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	144, 275
ErhI	CCWWGG	2 cut(s)	144, 275
FaeI	CATG	9 cut(s)	53, 92, 121, 148, 251, 279, 398, 461, 512
FaqI	GGGAC	2 cut(s)	136, 493
FatI	CATG	9 cut(s)	49, 88, 117, 144, 247, 275, 394, 457, 508
Fnu4HI	GCNGC	3 cut(s)	214, 217, 305
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	214, 217, 305
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	3 cut(s)	214, 217, 305
GsaI	CCCAGC	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	149, 349, 393
Hin1II	CATG	9 cut(s)	53, 92, 121, 148, 251, 279, 398, 461, 512
HphI	GGTGA	2 cut(s)	6, 406
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	2 cut(s)	155, 362
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	510
HpyCH4V	TGCA	5 cut(s)	4, 299, 317, 451, 508
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	9 cut(s)	53, 92, 121, 148, 251, 279, 398, 461, 512
KpnI	GGTACC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	95, 469, 496
LpnPI	CCDG	5 cut(s)	52, 249, 331, 358, 388
Lsp1109I	GCAGC	3 cut(s)	200, 203, 316
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	97, 471, 498
MboI	GATC	3 cut(s)	95, 469, 496
MboII	GAAGA	1 cut(s)	476
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	2 cut(s)	32, 259
MluNI	TGGCCA	1 cut(s)	149
MnlI	CCTC	1 cut(s)	453
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	2 cut(s)	108, 368
MslI	CAYNNNNRTG	5 cut(s)	54, 192, 252, 274, 399
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
NcoI	CCATGG	2 cut(s)	144, 275
NdeII	GATC	3 cut(s)	95, 469, 496
NlaIII	CATG	9 cut(s)	53, 92, 121, 148, 251, 279, 398, 461, 512
NlaIV	GGNNCC	1 cut(s)	491
NspI	RCATGY	2 cut(s)	53, 512
PciI	ACATGT	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	215, 218, 306
PscI	ACATGT	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	378
RsaI	GTAC	2 cut(s)	234, 491
RsaNI	GTAC	2 cut(s)	233, 490
RseI	CAYNNNNRTG	5 cut(s)	54, 192, 252, 274, 399
SaqAI	TTAA	2 cut(s)	108, 368
SatI	GCNGC	3 cut(s)	214, 217, 305
Sau3AI	GATC	3 cut(s)	95, 469, 496
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	5 cut(s)	139, 241, 309, 380, 495
SmiMI	CAYNNNNRTG	5 cut(s)	54, 192, 252, 274, 399
Sse9I	AATT	2 cut(s)	32, 259
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	144, 275
TaqI	TCGA	1 cut(s)	154
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	32, 259
Tru1I	TTAA	2 cut(s)	108, 368
Tru9I	TTAA	2 cut(s)	108, 368
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	3 cut(s)	213, 216, 304
TspDTI	ATGAA	5 cut(s)	106, 147, 236, 270, 347
TspRI	CASTG	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	343
XceI	RCATGY	2 cut(s)	53, 512
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.