Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

7628931 .. 7698188

Gene Structure 69258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTTTACCTATGTTGCATCACCAGGTTTTCGTTGCTTGCGTGTTTGAGAAAGGAGGAACGTGATACTGATGGATCCTCATTCTTGATAAATGGAAGCAAAGTACTAGAGGATCTCATTGTTTCTTTTGATGGAAAATCTAATCCTATTCGCAATTACTCTGCTGATGAACTCATCAAGGCAACCAACAACTTTGATGCTTCTTGCATTATGCAAGAATGTAGGATCTACAAAATGTTCAGTGGTGTTCTAGACGATCGACCTATTATCATTAAGAAGTACTTCACGTGGAGCTGGCTCAATGAGGATGCAGTAAGATCTCTAGCTATTCGTGACATTATCATTTCAACACAGATGAGCAACCATAATAATGTTTTAAAACTTTTGGGATGCTGCTTAGAGTTTCCTATACCAGCTCTAGTGCATGAATATGTAACAATAGGAGTGCTAAATGATGAAGGAGGTTTCGGAGCTAGTGAATCCTTAACCTGGAAAGCTAGACTAGGTATAGCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

19.43

Weight (kDa)

5.71

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	69, 82, 120, 233
AcvI	CACGTG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	105, 281
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	2 cut(s)	23, 488
AluBI	AGCT	5 cut(s)	294, 326, 416, 473, 497
AluI	AGCT	5 cut(s)	294, 326, 416, 473, 497
AlwI	GGATC	4 cut(s)	69, 82, 120, 233
ApeKI	GCWGC	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	74
BbrPI	CACGTG	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	2 cut(s)	65, 125
BciT130I	CCWGG	2 cut(s)	25, 490
BfaI	CTAG	7 cut(s)	107, 251, 323, 419, 474, 498, 503
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
BmcAI	AGTACT	2 cut(s)	105, 281
Bme1390I	CCNGG	2 cut(s)	25, 490
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	25, 490
BmsI	GCATC	4 cut(s)	27, 187, 298, 380
BsaAI	YACGTR	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	25, 490
BseGI	GGATG	2 cut(s)	313, 395
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	74, 112, 225, 256, 317
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	4 cut(s)	69, 82, 120, 233
BssMI	GATC	5 cut(s)	74, 112, 225, 256, 317
Bst2UI	CCWGG	2 cut(s)	25, 490
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	39, 296
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	313, 395
BstKTI	GATC	5 cut(s)	77, 115, 228, 259, 320
BstMBI	GATC	5 cut(s)	74, 112, 225, 256, 317
BstMCI	CGRYCG	1 cut(s)	259
BstNI	CCWGG	2 cut(s)	25, 490
BstSCI	CCNGG	2 cut(s)	23, 488
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	4 cut(s)	74, 112, 225, 317
BstYI	RGATCY	4 cut(s)	74, 112, 225, 317
BtsCI	GGATG	2 cut(s)	313, 395
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	39, 296
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	104, 280
CviAII	CATG	1 cut(s)	425
CviJI	RGCY	6 cut(s)	294, 298, 326, 416, 473, 497
CviKI_1	RGCY	6 cut(s)	294, 298, 326, 416, 473, 497
CviQI	GTAC	2 cut(s)	104, 280
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	5 cut(s)	76, 114, 227, 258, 319
DpnII	GATC	5 cut(s)	74, 112, 225, 256, 317
DraI	TTTAAA	1 cut(s)	378
Eco72I	CACGTG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	23, 488
FaeI	CATG	1 cut(s)	428
FaiI	YATR	7 cut(s)	13, 212, 366, 410, 426, 432, 509
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	2 cut(s)	320, 402
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	7 cut(s)	107, 251, 323, 419, 474, 498, 503
GluI	GCNGC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	428
HinfI	GANTC	1 cut(s)	479
HphI	GGTGA	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	470
Hpy188III	TCNNGA	3 cut(s)	85, 251, 332
HpyAV	CCTTC	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	61, 287
HpyCH4V	TGCA	5 cut(s)	18, 207, 214, 311, 424
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	2 cut(s)	61, 287
Hsp92II	CATG	1 cut(s)	428
Kzo9I	GATC	5 cut(s)	74, 112, 225, 256, 317
LmnI	GCTCC	2 cut(s)	291, 470
LpnPI	CCDG	6 cut(s)	10, 37, 280, 426, 475, 502
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	4 cut(s)	27, 187, 298, 380
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	7 cut(s)	107, 251, 323, 419, 474, 498, 503
MaeII	ACGT	2 cut(s)	61, 287
MaeIII	GTNAC	2 cut(s)	332, 433
MalI	GATC	5 cut(s)	76, 114, 227, 258, 319
MboI	GATC	5 cut(s)	74, 112, 225, 256, 317
MflI	RGATCY	4 cut(s)	74, 112, 225, 317
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	5 cut(s)	49, 88, 103, 298, 455
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	3 cut(s)	273, 377, 485
MslI	CAYNNNNRTG	2 cut(s)	369, 429
MspR9I	CCNGG	2 cut(s)	25, 490
MvaI	CCWGG	2 cut(s)	25, 490
NdeII	GATC	5 cut(s)	74, 112, 225, 256, 317
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	395
Ple19I	CGATCG	1 cut(s)	259
PmaCI	CACGTG	1 cut(s)	288
PmlI	CACGTG	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	23, 488
PspCI	CACGTG	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	23, 488
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	4 cut(s)	74, 112, 225, 317
PvuI	CGATCG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	105, 281
RsaNI	GTAC	2 cut(s)	104, 280
RseI	CAYNNNNRTG	2 cut(s)	369, 429
SaqAI	TTAA	3 cut(s)	273, 377, 485
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	5 cut(s)	74, 112, 225, 256, 317
ScaI	AGTACT	2 cut(s)	105, 281
ScrFI	CCNGG	2 cut(s)	25, 490
SexAI	ACCWGGT	1 cut(s)	23
SfaNI	GCATC	4 cut(s)	27, 187, 298, 380
SmiMI	CAYNNNNRTG	2 cut(s)	369, 429
Sse9I	AATT	1 cut(s)	154
SspMI	CTAG	7 cut(s)	107, 251, 323, 419, 474, 498, 503
StyD4I	CCNGG	2 cut(s)	23, 488
TaiI	ACGT	2 cut(s)	64, 290
TaqI	TCGA	1 cut(s)	259
TasI	AATT	1 cut(s)	154
TatI	WGTACW	2 cut(s)	103, 279
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	273, 377, 485
Tru9I	TTAA	3 cut(s)	273, 377, 485
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	183, 441, 471
TspRI	CASTG	1 cut(s)	247
XbaI	TCTAGA	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	7 cut(s)	107, 251, 323, 419, 474, 498, 503
ZrmI	AGTACT	2 cut(s)	105, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.