Rh6AG047700

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
6921163 .. 6924564
3402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG047700.1

Sequence Viewer

Length: 897 bp
ATGCCATCCAATGTCTTGTACTCTTTGCTTCCATGTTTGAAAAAGGAGGGAAAATATGCTAATAGCTCATTCTTGGATAATGGAAGCAAATTATTTGAGGATCTCATTGCTTCTTGTGATGGCAAATCCAATCCAATACGCCATTTCTCTGCTGATGAACTCATCAAGGCAACCAATAACTTCCATCCGTCTTGCCTTATACAAGAGTGTCGTCCACATGCATTTAGGGCTTCTCTGGACAACCGATTGGTTATCATTAAGACCATGGAGGCAGCAGATGAAGCTAGGGACGAAGCTATTCGTAACATCGTAATTTCAGTGCAGATGAGCACTCATAAGAATGTTTTGAAATTGTTGGGCTGCTGCTTAGAGTTCCCATTACCAGTTTTGGTGCATGAATATGCAACACTAGGAGTTCTTACAAAAAAGGAGGTTTGGGGGATGATGAAGCTCTGCCATGGAAAACTAGAATACGAATCGCAAAGCAGGTTCTCATTGCTATCATGTTTGAGAAAGGAGGAAATAGATACTCATAGGTCGTCATTCTTGGATATTGGAAGCATATTATTAGAGGATCTCATTGCTTCTTGCAATGGAAAATCTAATCCCATTCGAAATTACTCTGCTGATGAACTCATGAGGGCAACCAACAATTTTGATCCTTCTGGCGTGATGCAACAAGATTCATCATACAAAATGTTCCAGGGTTTTCTTGACAACCGGTCAGTTATCATTAAAATGTACTTCACTGTGCACTGGCTTGCTCCGGAGCAAACTAGGTCTATGGCAATTCGAGACATTGTCATTTCAATACAGATGAGCACCCACAAAACTGTTTTGAAACTCTTGGGATGTTGCTTACTGCTGAGAGTTCCCTATACCAGCTCTGGTCTATGA

Protein Analysis

298

Amino Acids

33.62

Weight (kDa)

7.97

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
AccIII TCCGGA 1 cut(s) 766
AclWI GGATC 3 cut(s) 108, 582, 653
AfaI GTAC 2 cut(s) 20, 743
AgeI ACCGGT 1 cut(s) 720
AgsI TTSAA 4 cut(s) 40, 349, 810, 841
AhdI GACNNNNNGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 5 cut(s) 66, 284, 296, 451, 885
AluI AGCT 5 cut(s) 66, 284, 296, 451, 885
Alw21I GWGCWC 3 cut(s) 332, 756, 824
Alw26I GTCTC 1 cut(s) 789
Alw44I GTGCAC 1 cut(s) 752
AlwI GGATC 3 cut(s) 108, 582, 653
Aor13HI TCCGGA 1 cut(s) 766
ApaLI GTGCAC 1 cut(s) 752
ApeKI GCWGC 3 cut(s) 272, 360, 363
AsiGI ACCGGT 1 cut(s) 720
Asp700I GAANNNNTTC 1 cut(s) 297
AsuII TTCGAA 1 cut(s) 613
BaeGI GKGCMC 1 cut(s) 756
Bbv12I GWGCWC 3 cut(s) 332, 756, 824
BbvI GCAGC 3 cut(s) 284, 347, 350
BccI CCATC 3 cut(s) 13, 113, 192
BciT130I CCWGG 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 4 cut(s) 285, 410, 467, 777
BfuAI ACCTGC 1 cut(s) 477
BisI GCNGC 3 cut(s) 273, 361, 364
BlsI GCNGC 3 cut(s) 274, 362, 365
Bme1390I CCNGG 1 cut(s) 704
BmeRI GACNNNNNGTC 1 cut(s) 721
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 613
BsaJI CCNNGG 3 cut(s) 264, 457, 703
BsaWI WCCGGW 2 cut(s) 720, 766
Bse118I RCCGGY 1 cut(s) 720
Bse1I ACTGG 2 cut(s) 383, 761
Bse3DI GCAATG 4 cut(s) 105, 494, 579, 598
BseAI TCCGGA 1 cut(s) 766
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 3 cut(s) 264, 457, 703
BseGI GGATG 4 cut(s) 5, 184, 447, 857
BseMI GCAATG 4 cut(s) 105, 494, 579, 598
BseMII CTCAG 1 cut(s) 857
BseNI ACTGG 2 cut(s) 383, 761
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 3 cut(s) 284, 347, 350
BsgI GTGCAG 1 cut(s) 341
BshTI ACCGGT 1 cut(s) 720
BsiHKAI GWGCWC 3 cut(s) 332, 756, 824
BsiSI CCGG 2 cut(s) 721, 767
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 613
Bsp1286I GDGCHC 3 cut(s) 332, 756, 824
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 3 cut(s) 100, 574, 658
Bsp19I CCATGG 2 cut(s) 264, 457
BspCNI CTCAG 1 cut(s) 858
BspEI TCCGGA 1 cut(s) 766
BspHI TCATGA 1 cut(s) 636
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 108, 582, 653
BspT104I TTCGAA 1 cut(s) 613
BsrDI GCAATG 4 cut(s) 105, 494, 579, 598
BsrFI RCCGGY 1 cut(s) 720
BsrI ACTGG 2 cut(s) 383, 761
BssAI RCCGGY 1 cut(s) 720
BssECI CCNNGG 3 cut(s) 264, 457, 703
BssMI GATC 3 cut(s) 100, 574, 658
BssT1I CCWWGG 2 cut(s) 264, 457
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 2 cut(s) 751, 835
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 1 cut(s) 762
BstDEI CTNAG 2 cut(s) 367, 866
BstDSI CCRYGG 2 cut(s) 264, 457
BstF5I GGATG 4 cut(s) 5, 184, 447, 857
BstKTI GATC 3 cut(s) 103, 577, 661
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 3 cut(s) 100, 574, 658
BstMWI GCNNNNNNNGC 2 cut(s) 227, 281
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 756
BstV1I GCAGC 3 cut(s) 284, 347, 350
BstX2I RGATCY 2 cut(s) 100, 574
BstYI RGATCY 2 cut(s) 100, 574
BtgI CCRYGG 2 cut(s) 264, 457
BtsCI GGATG 4 cut(s) 5, 184, 447, 857
BtsIMutI CAGTG 3 cut(s) 324, 747, 754
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 762
CciI TCATGA 1 cut(s) 636
Cfr10I RCCGGY 1 cut(s) 720
Csp6I GTAC 2 cut(s) 19, 742
CspAI ACCGGT 1 cut(s) 720
CviAII CATG 7 cut(s) 33, 218, 265, 395, 458, 504, 637
CviJI RGCY 8 cut(s) 66, 230, 284, 296, 360, 451, 760, 885
CviKI_1 RGCY 8 cut(s) 66, 230, 284, 296, 360, 451, 760, 885
CviQI GTAC 2 cut(s) 19, 742
DdeI CTNAG 2 cut(s) 367, 866
DpnI GATC 3 cut(s) 102, 576, 660
DpnII GATC 3 cut(s) 100, 574, 658
DriI GACNNNNNGTC 1 cut(s) 721
Eam1105I GACNNNNNGTC 1 cut(s) 721
Eco130I CCWWGG 2 cut(s) 264, 457
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 264, 457
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 264, 457
FaeI CATG 7 cut(s) 36, 221, 268, 398, 461, 507, 640
FaqI GGGAC 1 cut(s) 302
FatI CATG 7 cut(s) 32, 217, 264, 394, 457, 503, 636
Fnu4HI GCNGC 3 cut(s) 273, 361, 364
FokI GGATG 3 cut(s) 171, 454, 864
Fsp4HI GCNGC 3 cut(s) 273, 361, 364
FspBI CTAG 4 cut(s) 285, 410, 467, 777
GluI GCNGC 3 cut(s) 273, 361, 364
HapII CCGG 2 cut(s) 721, 767
Hin1II CATG 7 cut(s) 36, 221, 268, 398, 461, 507, 640
HinfI GANTC 2 cut(s) 476, 683
HpaII CCGG 2 cut(s) 721, 767
Hpy166II GTNNAC 2 cut(s) 215, 754
Hpy188III TCNNGA 5 cut(s) 236, 637, 713, 767, 794
Hpy8I GTNNAC 2 cut(s) 215, 754
HpyAV CCTTC 1 cut(s) 672
HpyCH4III ACNGT 2 cut(s) 751, 835
HpyCH4V TGCA 7 cut(s) 221, 322, 394, 404, 591, 676, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 281
HpyF3I CTNAG 2 cut(s) 367, 866
Hsp92II CATG 7 cut(s) 36, 221, 268, 398, 461, 507, 640
Kpn2I TCCGGA 1 cut(s) 766
Kzo9I GATC 3 cut(s) 100, 574, 658
LmnI GCTCC 2 cut(s) 769, 769
Lsp1109I GCAGC 3 cut(s) 284, 347, 350
LweI GCATC 1 cut(s) 663
MaeI CTAG 4 cut(s) 285, 410, 467, 777
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 102, 576, 660
MboI GATC 3 cut(s) 100, 574, 658
MflI RGATCY 2 cut(s) 100, 574
MhlI GDGCHC 3 cut(s) 332, 756, 824
MluCI AATT 6 cut(s) 89, 312, 350, 616, 652, 789
MnlI CCTC 7 cut(s) 40, 91, 262, 424, 511, 565, 633
Mph1103I ATGCAT 1 cut(s) 223
MroI TCCGGA 1 cut(s) 766
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 258, 735
MslI CAYNNNNRTG 3 cut(s) 339, 399, 737
MspI CCGG 2 cut(s) 721, 767
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
MwoI GCNNNNNNNGC 2 cut(s) 227, 281
NcoI CCATGG 2 cut(s) 264, 457
NdeII GATC 3 cut(s) 100, 574, 658
NlaIII CATG 7 cut(s) 36, 221, 268, 398, 461, 507, 640
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 221
NspV TTCGAA 1 cut(s) 613
PagI TCATGA 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 476, 683
PflFI GACNNNGTC 1 cut(s) 800
PinAI ACCGGT 1 cut(s) 720
PkrI GCNGC 3 cut(s) 274, 362, 365
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PsuI RGATCY 2 cut(s) 100, 574
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 2 cut(s) 20, 743
RsaNI GTAC 2 cut(s) 19, 742
RseI CAYNNNNRTG 3 cut(s) 339, 399, 737
SaqAI TTAA 2 cut(s) 258, 735
SatI GCNGC 3 cut(s) 273, 361, 364
Sau3AI GATC 3 cut(s) 100, 574, 658
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 3 cut(s) 332, 756, 824
SetI ASST 9 cut(s) 68, 286, 298, 435, 453, 491, 539, 782, 887
SfaNI GCATC 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 613
SmiMI CAYNNNNRTG 3 cut(s) 339, 399, 737
Sse9I AATT 6 cut(s) 89, 312, 350, 616, 652, 789
SspMI CTAG 4 cut(s) 285, 410, 467, 777
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 2 cut(s) 264, 457
TaaI ACNGT 2 cut(s) 751, 835
TaqI TCGA 2 cut(s) 613, 793
TasI AATT 6 cut(s) 89, 312, 350, 616, 652, 789
TatI WGTACW 2 cut(s) 18, 741
TfiI GAWTC 2 cut(s) 476, 683
Tru1I TTAA 2 cut(s) 258, 735
Tru9I TTAA 2 cut(s) 258, 735
TscAI CASTG 3 cut(s) 324, 754, 761
TseI GCWGC 3 cut(s) 272, 360, 363
TspDTI ATGAA 6 cut(s) 171, 294, 411, 461, 645, 675
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 3 cut(s) 324, 754, 761
Tth111I GACNNNGTC 1 cut(s) 800
VneI GTGCAC 1 cut(s) 752
XceI RCATGY 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 4 cut(s) 285, 410, 467, 777
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.