Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

1287195 .. 1288710

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGGAAACCTTGCTGTGAGAAGAAGACGACCAATAAAGGAGCATGGTCGAAGCAAGAAGATGAGAAGCTCACTAAATACATTCAAAAACATGGCGAAGGAAGCTGGCGCTCTCTTCCGGTCGCTGCAGGGTTGCTTCGTTGTGGAAAGAGTTGCAGACTGAGGTGGGTAAATTATCTAAGGCCAGACCTGAAACGTGGCAACTTTGGTGAAGATGAAGAGGACCTCATCATCAAGCTCCATGCACTTCTTGGGAACAGGTGGTCACTAATTGCTGGAAGATTGCCCGGCCGGACCGACAATGAAGTGAAGAATTACTGGAATACTCATCTGAGGAGAAAGCTTATGCATTTGGGAATTGACCCCAACAACCATCGCATAGGACACAATATTTGCCTCGACAAGGTTAATCATCCATGTAAATCAGCGAATTCACAAGCAAATAACGATGATGAAGACGATTCGCAGGATCCATTGTTGGATTCCACAAGTTCCGGCCCCGAAAGCAACACAAGTTGTACTTTGCCTGACTTGAATCTTGATCTCACAATAGGCCTTCCATGGTCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

190

Amino Acids

21.55

Weight (kDa)

8.46

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	3.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 74	2.8e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 111	1.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	1.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	464, 477
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	86, 535
AluBI	AGCT	4 cut(s)	70, 105, 238, 343
AluI	AGCT	4 cut(s)	70, 105, 238, 343
AlwI	GGATC	2 cut(s)	464, 477
AoxI	GGCC	4 cut(s)	182, 289, 496, 553
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	430
ArsI	GACNNNNNNTTYG	2 cut(s)	375, 407
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	223, 294, 497
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	223, 294
BamHI	GGATCC	1 cut(s)	469
BbsI	GAAGAC	2 cut(s)	32, 462
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	112
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	223, 294
BmgT120I	GGNCC	3 cut(s)	223, 294, 497
BmiI	GGNNCC	2 cut(s)	471, 499
BmrFI	CCNGG	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	32, 462
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	560
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	560
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	152, 323
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	349
BseX3I	CGGCCG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	112
Bsh1285I	CGRYCG	2 cut(s)	123, 292
BshFI	GGCC	4 cut(s)	184, 291, 498, 555
BsiEI	CGRYCG	2 cut(s)	123, 292
BsiSI	CCGG	4 cut(s)	119, 288, 292, 495
BslI	CCNNNNNNNGG	1 cut(s)	403
BsnI	GGCC	4 cut(s)	184, 291, 498, 555
Bsp143I	GATC	2 cut(s)	469, 541
Bsp19I	CCATGG	1 cut(s)	560
BspANI	GGCC	4 cut(s)	184, 291, 498, 555
BspCNI	CTCAG	2 cut(s)	153, 324
BspLI	GGNNCC	2 cut(s)	471, 499
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	464, 477
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	2 cut(s)	469, 541
BssT1I	CCWWGG	1 cut(s)	560
Bst4CI	ACNGT	1 cut(s)	570
Bst6I	CTCTTC	2 cut(s)	120, 213
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	161, 179, 332
BstDSI	CCRYGG	1 cut(s)	560
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	472, 544
BstMBI	GATC	2 cut(s)	469, 541
BstMCI	CGRYCG	2 cut(s)	123, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 504
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	2 cut(s)	32, 462
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BstZI	CGGCCG	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	184, 291, 498, 555
BtgI	CCRYGG	1 cut(s)	560
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	3 cut(s)	223, 294, 497
CpoI	CGGWCCG	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	519
CspI	CGGWCCG	1 cut(s)	294
CviAII	CATG	5 cut(s)	45, 92, 242, 417, 561
CviJI	RGCY	8 cut(s)	70, 105, 184, 238, 291, 343, 498, 555
CviKI_1	RGCY	8 cut(s)	70, 105, 184, 238, 291, 343, 498, 555
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	3 cut(s)	161, 179, 332
DpnI	GATC	2 cut(s)	471, 543
DpnII	GATC	2 cut(s)	469, 541
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	120, 213
EarI	CTCTTC	2 cut(s)	120, 213
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	560
Eco147I	AGGCCT	1 cut(s)	555
Eco47I	GGWCC	2 cut(s)	223, 294
Eco52I	CGGCCG	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	5 cut(s)	48, 95, 245, 420, 564
FaiI	YATR	7 cut(s)	46, 93, 243, 347, 380, 418, 562
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FatI	CATG	5 cut(s)	44, 91, 241, 416, 560
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	126
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	4 cut(s)	184, 291, 498, 555
HapII	CCGG	4 cut(s)	119, 288, 292, 495
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	48, 95, 245, 420, 564
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	3 cut(s)	461, 482, 535
HpaII	CCGG	4 cut(s)	119, 288, 292, 495
HphI	GGTGA	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	92, 566
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	128, 156, 245, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 504
HpyF3I	CTNAG	3 cut(s)	161, 179, 332
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	48, 95, 245, 420, 564
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	469, 541
LmnI	GCTCC	2 cut(s)	41, 243
Lsp1109I	GCAGC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	264, 564
MalI	GATC	2 cut(s)	471, 543
MboI	GATC	2 cut(s)	469, 541
MboII	GAAGA	9 cut(s)	34, 37, 71, 107, 224, 230, 291, 322, 467
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	5 cut(s)	172, 270, 313, 357, 430
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	5 cut(s)	156, 214, 236, 327, 407
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	1 cut(s)	408
MspI	CCGG	4 cut(s)	119, 288, 292, 495
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	102, 504
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	560
NdeII	GATC	2 cut(s)	469, 541
NlaIII	CATG	5 cut(s)	48, 95, 245, 420, 564
NlaIV	GGNNCC	2 cut(s)	471, 499
NmuCI	GTSAC	2 cut(s)	264, 564
NsiI	ATGCAT	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	461, 482, 535
PkrI	GCNGC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	471, 499
PspPI	GGNCC	3 cut(s)	223, 294, 497
PspPPI	RGGWCCY	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
Rsr2I	CGGWCCG	1 cut(s)	294
RsrII	CGGWCCG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	469, 541
Sau96I	GGNCC	3 cut(s)	223, 294, 497
ScrFI	CCNGG	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	2 cut(s)	223, 294
Sse9I	AATT	5 cut(s)	172, 270, 313, 357, 430
SseBI	AGGCCT	1 cut(s)	555
SspI	AATATT	1 cut(s)	391
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	1 cut(s)	570
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	50, 399
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	5 cut(s)	172, 270, 313, 357, 430
TatI	WGTACW	1 cut(s)	518
TfiI	GAWTC	3 cut(s)	461, 482, 535
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	2 cut(s)	264, 564
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	2 cut(s)	264, 564
TspDTI	ATGAA	3 cut(s)	231, 318, 468
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	223, 294
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.