Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

18049445 .. 18049816

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1109700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAAGTCTGGTTACATTACAGAAAAAAGTGATGTCTACAGCTTTGGTGTGCATTTACTTGCATTCTTGACTGGACAAAAAGCTGTAGATAAATATGACGCAGGAGAATACCAATCGATTATTGTATATGTGAAAGTACATGCTAGAGATATCGGACAGATTCAGACAATTGTGGACCCTAAAATATTTGGGGAGATAACGGGAGATGGACAAGTACAACAGCACTTGCACGATTTTCTAGCATTAGAATTGCTATGCACCCAAGATAAAAGTGAACGAATGCCAGATACTCTAGCATTAGAATTGCTATGCACCCAAGATAAAAGTGAACGAATGCCAGATACGATAGACGTGGCTAAAGAACTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

124

Amino Acids

13.83

Weight (kDa)

4.81

Isoelectric Point (pI)

20.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	138, 216
AjiI	CACGTC	1 cut(s)	352
AluBI	AGCT	2 cut(s)	42, 83
AluI	AGCT	2 cut(s)	42, 83
AspS9I	GGNCC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	175
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BccI	CCATC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	144, 239, 293
BfmI	CTRYAG	2 cut(s)	37, 84
Bme18I	GGWCC	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	116
BsmI	GAATGC	3 cut(s)	62, 285, 339
BspDI	ATCGAT	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	143
BstSFI	CTRYAG	2 cut(s)	37, 84
Bsu15I	ATCGAT	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	137, 215
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	3 cut(s)	42, 83, 356
CviKI_1	RGCY	3 cut(s)	42, 83, 356
CviQI	GTAC	2 cut(s)	137, 215
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	151
FaeI	CATG	1 cut(s)	143
FaiI	YATR	6 cut(s)	96, 127, 129, 141, 256, 310
FatI	CATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	36
FspBI	CTAG	3 cut(s)	144, 239, 293
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	160
Hpy166II	GTNNAC	4 cut(s)	37, 175, 275, 329
Hpy188I	TCNGA	2 cut(s)	155, 165
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	4 cut(s)	37, 175, 275, 329
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	52, 62, 229, 258, 312
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	57, 87, 297, 351
MaeI	CTAG	3 cut(s)	144, 239, 293
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	11
MfeI	CAATTG	1 cut(s)	168
MluCI	AATT	3 cut(s)	168, 248, 302
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	3 cut(s)	62, 285, 339
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	177
NspI	RCATGY	1 cut(s)	143
PctI	GAATGC	3 cut(s)	62, 285, 339
PfeI	GAWTC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	138, 216
RsaNI	GTAC	2 cut(s)	137, 215
Sau96I	GGNCC	1 cut(s)	175
SetI	ASST	3 cut(s)	44, 85, 354
SfcI	CTRYAG	2 cut(s)	37, 84
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	3 cut(s)	168, 248, 302
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	3 cut(s)	144, 239, 293
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	168, 248, 302
TatI	WGTACW	2 cut(s)	136, 214
TfiI	GAWTC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	3 cut(s)	144, 239, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.