Rorug05G0532100

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
72039331 .. 72039825
495 bp
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UTR
Exon/CDS
Intron
Rorug05G0532100.1

Sequence Viewer

Length: 495 bp
ATGGCTAGAGTTGATCAAAATGTGTTTGTCAAGGTAGGTTTGGTGTTAGTAAGTGTAGCACTATTCATGTCATCATTTGCAGCAGCTCAAGAATATGAGGTTATTTATCAAGTTTCTGAGGATGCTGCGGCGAGCCCTATTGGCATCGAGGTTGACTATTTAGTCATTGATGAAGCCTTCCCTCCAATTTCTTCAGAAAACGGTCAATATGCGTTCCCTCCTAACCTATCACCGGAATCTTATAAGAAGTTGGATGAATGTGTAAATAAGATTACAGAATATTATGCTAAAGAGATCTTGCCCAGAATTTTTAAAAGCGAACCTCTCACTACCGATAGTTGCAAAGCCATTCTGCATTTGGGATATGATTGTCACATCCGGTCAGTGAAAACACTGCTCTCACGTCCGGAACTAAAAGAAAAGGCTTCTGAGATACTGCCTAAAAGTGTGCAGATTTGGGAAACATGTGCCTTTGTTGCCCCTTCTCCTTTCTAA

Protein Analysis

164

Amino Acids

18.3

Weight (kDa)

4.86

Isoelectric Point (pI)

67.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 86 - 156 1.9e-06 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AasI GACNNNNNNGTC 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 464
AjiI CACGTC 1 cut(s) 404
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 80, 83, 125
ApoI RAATTY 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 222
BanII GRGCYC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 92, 95, 112
BclI TGATCA 1 cut(s) 13
BfaI CTAG 1 cut(s) 6
BglI GCCNNNNNGGC 1 cut(s) 141
BglII AGATCT 1 cut(s) 294
BisI GCNGC 4 cut(s) 81, 84, 126, 129
BlsI GCNGC 4 cut(s) 82, 85, 127, 130
BmgBI CACGTC 1 cut(s) 404
BmsI GCATC 2 cut(s) 112, 153
BpuEI CTTGAG 1 cut(s) 72
BsaWI WCCGGW 3 cut(s) 232, 378, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 406
BseGI GGATG 3 cut(s) 127, 259, 375
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 108, 420
BseXI GCAGC 3 cut(s) 92, 95, 112
BsgI GTGCAG 1 cut(s) 470
BsiSI CCGG 3 cut(s) 233, 379, 407
BslI CCNNNNNNNGG 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 2 cut(s) 13, 294
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 109, 421
BspEI TCCGGA 1 cut(s) 406
BssMI GATC 2 cut(s) 13, 294
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 117, 429
BstF5I GGATG 3 cut(s) 127, 259, 375
BstKTI GATC 2 cut(s) 16, 297
BstMBI GATC 2 cut(s) 13, 294
BstMWI GCNNNNNNNGC 2 cut(s) 141, 476
BstNSI RCATGY 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 92, 95, 112
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BtrI CACGTC 1 cut(s) 404
BtsCI GGATG 3 cut(s) 127, 259, 375
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 2 cut(s) 390, 392
Cac8I GCNNGC 1 cut(s) 133
CviAII CATG 2 cut(s) 67, 465
CviJI RGCY 6 cut(s) 5, 86, 135, 176, 347, 425
CviKI_1 RGCY 6 cut(s) 5, 86, 135, 176, 347, 425
DdeI CTNAG 2 cut(s) 117, 429
DpnI GATC 2 cut(s) 15, 296
DpnII GATC 2 cut(s) 13, 294
DraI TTTAAA 1 cut(s) 313
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 2 cut(s) 70, 468
FaiI YATR 7 cut(s) 68, 96, 210, 243, 285, 366, 466
FatI CATG 2 cut(s) 66, 464
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 81, 84, 126, 129
FokI GGATG 3 cut(s) 134, 266, 362
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 81, 84, 126, 129
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 81, 84, 126, 129
HapII CCGG 3 cut(s) 233, 379, 407
Hin1II CATG 2 cut(s) 70, 468
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 236
HpaII CCGG 3 cut(s) 233, 379, 407
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 118, 196, 430
Hpy188III TCNNGA 2 cut(s) 89, 407
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 187, 492
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 80, 342, 355, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 476
HpyF3I CTNAG 2 cut(s) 117, 429
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 2 cut(s) 70, 468
Kpn2I TCCGGA 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 294
LpnPI CCDG 4 cut(s) 246, 316, 392, 420
Lsp1109I GCAGC 3 cut(s) 92, 95, 112
LweI GCATC 2 cut(s) 112, 153
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 15, 296
MboI GATC 2 cut(s) 13, 294
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 186, 306
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 6 cut(s) 91, 112, 142, 192, 228, 333
MroI TCCGGA 1 cut(s) 406
MseI TTAA 1 cut(s) 312
MspI CCGG 3 cut(s) 233, 379, 407
MwoI GCNNNNNNNGC 2 cut(s) 141, 476
NdeII GATC 2 cut(s) 13, 294
NlaIII CATG 2 cut(s) 70, 468
NmuCI GTSAC 1 cut(s) 371
NspI RCATGY 1 cut(s) 468
PciI ACATGT 1 cut(s) 464
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 82, 85, 127, 130
PscI ACATGT 1 cut(s) 464
PsiI TTATAA 1 cut(s) 243
PsuI RGATCY 1 cut(s) 294
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 4 cut(s) 81, 84, 126, 129
Sau3AI GATC 2 cut(s) 13, 294
SduI GDGCHC 1 cut(s) 137
SetI ASST 8 cut(s) 36, 40, 88, 102, 153, 228, 325, 406
SfaNI GCATC 2 cut(s) 112, 153
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 186, 306
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 281
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 186, 306
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 390, 399
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 3 cut(s) 80, 83, 125
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 55, 186, 270
TspRI CASTG 2 cut(s) 390, 399
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.