Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

7095054 .. 7123519

Gene Structure 28466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG044800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCATCCAATGTCTTGTACTCTTTGCTTCCATGTTTGAGAAAGGAGGGAGAAGATGCTGATAGATCATTCTTGGATAATGGAAGCAAATTATTAGAGGATCTGATTGCCTCTTGTGATGGAAAATCTAATCCCATTCGCCATTACTCTGCTGATGAACTTGTCAGGGCAACCAACAACTTCCATCCTTCTTGTCGTATATCTGGTGGATACCGTTTATATAAGGGTTTTCTAGACAACCGATTGGTTATGATTAAGGGGGTGAAAACTTCATATTTTGATTATAATGATGAGGACGACAGAGCGCAAGGGAGGGATTGGTCCTATTGGCTTTTCAAGAGGGCGAGGGAGGAAGCCATTCGTAACATTATAATATCAACACAGATGAGCACTCATAAGAATGTTTTGAAACTGTTGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

16.13

Weight (kDa)

8.42

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	285, 371
AclWI	GGATC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	337, 409
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	392
BccI	CCATC	3 cut(s)	13, 113, 192
BciVI	GTATCC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BmsI	GCATC	1 cut(s)	46
BseGI	GGATG	2 cut(s)	5, 184
BsiHKAI	GWGCWC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	65, 100
BspPI	GGATC	1 cut(s)	108
BssMI	GATC	2 cut(s)	65, 100
Bst4CI	ACNGT	2 cut(s)	215, 414
BstF5I	GGATG	2 cut(s)	5, 184
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	68, 103
BstMBI	GATC	2 cut(s)	65, 100
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	5, 184
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	3 cut(s)	331, 356, 420
CviKI_1	RGCY	3 cut(s)	331, 356, 420
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	2 cut(s)	67, 102
DpnII	GATC	2 cut(s)	65, 100
Eco47I	GGWCC	1 cut(s)	321
FaeI	CATG	1 cut(s)	36
FaiI	YATR	9 cut(s)	34, 200, 220, 222, 251, 274, 285, 371, 396
FatI	CATG	1 cut(s)	32
FokI	GGATG	1 cut(s)	171
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	233, 337
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	215, 414
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	65, 100
LpnPI	CCDG	2 cut(s)	151, 189
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	67, 102
MboI	GATC	2 cut(s)	65, 100
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	1 cut(s)	89
MnlI	CCTC	8 cut(s)	40, 91, 121, 286, 306, 333, 339, 343
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	399
NdeII	GATC	2 cut(s)	65, 100
NlaIII	CATG	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	357
PsiI	TTATAA	2 cut(s)	285, 371
PspPI	GGNCC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	65, 100
Sau96I	GGNCC	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	215, 414
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TspDTI	ATGAA	2 cut(s)	171, 261
VpaK11BI	GGWCC	1 cut(s)	321
XbaI	TCTAGA	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.