Rw6G004140

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
6726583 .. 6729285
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004140.1

Sequence Viewer

Length: 1047 bp
ATGCTAAGTGTTGGATATAAGTACTCTTTGCTTCCATGTTTGAAAAAGGAGGGAAAATATGCTAATAGCTCATTCTTGGATAATGGAAGCAAATTATTAGAGGATCTCGTTGCTTCTTGTGATGGCAAATCCAATCCAATACGCCATTTCTCTGCTGATGAACTCATCAGGGCAACCAATAACTTCCATCCGTCTTGCCTTATACAAGAGTGTCGTCCACATGCATTTAGGGGTTCTCTGGACAACCGATTGGTTATCATTAAGACCATGGAGGCAGCAGATGAAGCTAGGGACGAAGCTATTCGTAACATCGTAATTTCAGTGCAGATGAGCACTCATAAGAATGTTTTGAAATTGTTGGGCTGCTGCTTAGAGTTCCCATTACCAGTTTTGGTGCATGAATATGCAACACTAGGAGTTCTTAACAAGAAAGGAGGTTTGGGGGATGATGAAGCTCTGCCATGGAAAACTAGAATACAAATCGCAAAGCAGGTTGCTAGTGCTATTACTTATCTCCATACAGCCTTCCCTAGACCCATCATTCATAGGGATCTAAGGCCTGATTGTATTCTCTTGGATGAGGACTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACGATTCCTCCTAAGCAATCACATGTCAAAGATATCGTGAAAGGCACAGTAGGGTATCTCGACCCTGTGTATGTCAAGTCTGCATACATTTCTGAAAAAACTGATGTTTATAGCTTTGGTGTTATTTTACTTGTTTTCTTGACGGGACGAAAACCCTTCAAAGAAAATCAGAGAGGATATTTTGAATATGAGGACTTCATTCCATATTTGAAGTTACAATTAGCATGTGAGGGCCAAATTCAGACAATTGTGGATCCTAAAATCCTTGAGGAGTTGGGGGAAGGTGATGAGCAAGCACAACAGCAGTTGCATGATTTCTTATCACTGGCATTGTCATGTACCCAACTAGAAAGTGAAGGAAGGCCAGATATGATCGATGTGGCAAAAGAACTCGTCCGAATTGAGAAATCTATCTTGCCATCCTAG

Protein Analysis

348

Amino Acids

39.15

Weight (kDa)

5.77

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 81 - 288 3.7e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 81 - 337 3.4e-27 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AclWI GGATC 4 cut(s) 111, 558, 869, 882
AcsI RAATTY 1 cut(s) 858
AfaI GTAC 2 cut(s) 23, 961
AflIII ACRYGT 1 cut(s) 643
AgsI TTSAA 5 cut(s) 43, 352, 781, 806, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 5 cut(s) 69, 287, 299, 455, 735
AluI AGCT 5 cut(s) 69, 287, 299, 455, 735
Alw21I GWGCWC 1 cut(s) 335
AlwI GGATC 4 cut(s) 111, 558, 869, 882
AoxI GGCC 3 cut(s) 557, 853, 983
ApeKI GCWGC 3 cut(s) 275, 363, 366
ApoI RAATTY 1 cut(s) 858
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 853
AsuHPI GGTGA 1 cut(s) 917
BamHI GGATCC 1 cut(s) 874
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 287, 350, 353
BccI CCATC 3 cut(s) 116, 195, 545
BfaI CTAG 7 cut(s) 288, 413, 471, 498, 531, 968, 1045
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 3 cut(s) 276, 364, 367
BlsI GCNGC 3 cut(s) 277, 365, 368
BmcAI AGTACT 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 853
BmiI GGNNCC 1 cut(s) 876
Bpu10I CCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 908
Bsa29I ATCGAT 1 cut(s) 996
BsaJI CCNNGG 2 cut(s) 267, 461
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bse1I ACTGG 2 cut(s) 386, 951
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 2 cut(s) 267, 461
BseGI GGATG 4 cut(s) 187, 451, 583, 1040
BseNI ACTGG 2 cut(s) 386, 951
BseRI GAGGAG 1 cut(s) 905
BseXI GCAGC 3 cut(s) 287, 350, 353
BsgI GTGCAG 1 cut(s) 344
BshFI GGCC 3 cut(s) 559, 855, 985
BshVI ATCGAT 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 335
BslFI GGGAC 2 cut(s) 305, 780
BsmFI GGGAC 2 cut(s) 305, 780
BsnI GGCC 3 cut(s) 559, 855, 985
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 4 cut(s) 103, 550, 874, 993
Bsp19I CCATGG 2 cut(s) 267, 461
BspANI GGCC 3 cut(s) 559, 855, 985
BspDI ATCGAT 1 cut(s) 996
BspLI GGNNCC 1 cut(s) 876
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 4 cut(s) 111, 558, 869, 882
BsrI ACTGG 2 cut(s) 386, 951
BssECI CCNNGG 2 cut(s) 267, 461
BssMI GATC 4 cut(s) 103, 550, 874, 993
BssT1I CCWWGG 2 cut(s) 267, 461
Bst4CI ACNGT 1 cut(s) 670
BstC8I GCNNGC 1 cut(s) 915
BstDEI CTNAG 4 cut(s) 5, 370, 554, 633
BstDSI CCRYGG 2 cut(s) 267, 461
BstF5I GGATG 4 cut(s) 187, 451, 583, 1040
BstKTI GATC 4 cut(s) 106, 553, 877, 996
BstMBI GATC 4 cut(s) 103, 550, 874, 993
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNSI RCATGY 3 cut(s) 224, 647, 849
BstV1I GCAGC 3 cut(s) 287, 350, 353
BstX2I RGATCY 3 cut(s) 103, 550, 874
BstYI RGATCY 3 cut(s) 103, 550, 874
Bsu15I ATCGAT 1 cut(s) 996
BsuRI GGCC 3 cut(s) 559, 855, 985
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 2 cut(s) 267, 461
BtsCI GGATG 4 cut(s) 187, 451, 583, 1040
BtsIMutI CAGTG 2 cut(s) 327, 944
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 915
Cfr13I GGNCC 1 cut(s) 853
ClaI ATCGAT 1 cut(s) 996
Csp6I GTAC 2 cut(s) 22, 960
CviAII CATG 9 cut(s) 36, 221, 268, 398, 462, 644, 846, 932, 957
CviQI GTAC 2 cut(s) 22, 960
DdeI CTNAG 4 cut(s) 5, 370, 554, 633
DpnI GATC 4 cut(s) 105, 552, 876, 995
DpnII GATC 4 cut(s) 103, 550, 874, 993
Eco130I CCWWGG 2 cut(s) 267, 461
Eco147I AGGCCT 1 cut(s) 559
Eco32I GATATC 1 cut(s) 655
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 2 cut(s) 267, 461
EcoT22I ATGCAT 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 267, 461
FaeI CATG 9 cut(s) 39, 224, 271, 401, 465, 647, 849, 935, 960
FaqI GGGAC 2 cut(s) 305, 780
FatI CATG 9 cut(s) 35, 220, 267, 397, 461, 643, 845, 931, 956
Fnu4HI GCNGC 3 cut(s) 276, 364, 367
FokI GGATG 4 cut(s) 174, 458, 590, 1027
Fsp4HI GCNGC 3 cut(s) 276, 364, 367
FspBI CTAG 7 cut(s) 288, 413, 471, 498, 531, 968, 1045
GluI GCNGC 3 cut(s) 276, 364, 367
HaeIII GGCC 3 cut(s) 559, 855, 985
Hin1II CATG 9 cut(s) 39, 224, 271, 401, 465, 647, 849, 935, 960
HinfI GANTC 1 cut(s) 625
HphI GGTGA 1 cut(s) 917
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 4 cut(s) 715, 792, 864, 1019
Hpy188III TCNNGA 4 cut(s) 239, 658, 680, 760
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 5 cut(s) 535, 787, 896, 971, 975
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4V TGCA 6 cut(s) 224, 325, 397, 407, 704, 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 4 cut(s) 5, 370, 554, 633
Hsp92II CATG 9 cut(s) 39, 224, 271, 401, 465, 647, 849, 935, 960
Kzo9I GATC 4 cut(s) 103, 550, 874, 993
LpnPI CCDG 8 cut(s) 154, 224, 399, 476, 573, 699, 932, 999
Lsp1109I GCAGC 3 cut(s) 287, 350, 353
MaeI CTAG 7 cut(s) 288, 413, 471, 498, 531, 968, 1045
MaeIII GTNAC 3 cut(s) 305, 602, 834
MalI GATC 4 cut(s) 105, 552, 876, 995
MboI GATC 4 cut(s) 103, 550, 874, 993
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 3 cut(s) 103, 550, 874
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 8 cut(s) 92, 315, 353, 596, 839, 858, 867, 1020
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 2 cut(s) 261, 423
MslI CAYNNNNRTG 3 cut(s) 342, 402, 955
MunI CAATTG 1 cut(s) 867
MwoI GCNNNNNNNGC 1 cut(s) 284
NcoI CCATGG 2 cut(s) 267, 461
NdeII GATC 4 cut(s) 103, 550, 874, 993
NlaIII CATG 9 cut(s) 39, 224, 271, 401, 465, 647, 849, 935, 960
NlaIV GGNNCC 1 cut(s) 876
NmuCI GTSAC 1 cut(s) 602
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 3 cut(s) 224, 647, 849
PceI AGGCCT 1 cut(s) 559
PciI ACATGT 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 625
PkrI GCNGC 3 cut(s) 277, 365, 368
PscI ACATGT 1 cut(s) 643
PspN4I GGNNCC 1 cut(s) 876
PspPI GGNCC 1 cut(s) 853
PsuI RGATCY 3 cut(s) 103, 550, 874
RsaI GTAC 2 cut(s) 23, 961
RsaNI GTAC 2 cut(s) 22, 960
RseI CAYNNNNRTG 3 cut(s) 342, 402, 955
SaqAI TTAA 2 cut(s) 261, 423
SatI GCNGC 3 cut(s) 276, 364, 367
Sau3AI GATC 4 cut(s) 103, 550, 874, 993
Sau96I GGNCC 1 cut(s) 853
ScaI AGTACT 1 cut(s) 23
SduI GDGCHC 1 cut(s) 335
SetI ASST 8 cut(s) 71, 289, 301, 439, 457, 495, 737, 907
SmiMI CAYNNNNRTG 3 cut(s) 342, 402, 955
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 8 cut(s) 92, 315, 353, 596, 839, 858, 867, 1020
SseBI AGGCCT 1 cut(s) 559
SspMI CTAG 7 cut(s) 288, 413, 471, 498, 531, 968, 1045
StuI AGGCCT 1 cut(s) 559
StyI CCWWGG 2 cut(s) 267, 461
TaaI ACNGT 1 cut(s) 670
TaqI TCGA 2 cut(s) 681, 996
TasI AATT 8 cut(s) 92, 315, 353, 596, 839, 858, 867, 1020
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 1 cut(s) 625
Tru1I TTAA 2 cut(s) 261, 423
Tru9I TTAA 2 cut(s) 261, 423
TscAI CASTG 2 cut(s) 327, 951
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 3 cut(s) 275, 363, 366
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 6 cut(s) 174, 297, 414, 465, 533, 808
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 2 cut(s) 327, 951
XapI RAATTY 1 cut(s) 858
XceI RCATGY 3 cut(s) 224, 647, 849
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 7 cut(s) 288, 413, 471, 498, 531, 968, 1045
ZrmI AGTACT 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.