Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

6824084 .. 6824633

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCAATCTGATGTTTATACTGATCATTTGGTATATACACCTGGGTATCTTGACCCTACCTACTCGGCTAATCACCGCATTTCAGACAAAACTGATGTGTATACTTTTGGTATTGTATTACTTGTATTTATAACAGGACAACAAGCCATGTTAAGAAATCAGGCAGGAGAATATGAGCACATAATTCCATATGTGAAATCACATGCTTCTGGTGGCCAAGTTCAACCCATTATGGATCCTAAAATATCTATGGAGGTAGGGGGAGCTGAACCAGTACACCAGCAATTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAAGATAAAAGTGAAGAAAGGCCAGATATGATCGATGTGGCCAAAGAACTCGTACGAATTGAGAATTTTATCTCGAGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

4.89

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	101
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	2 cut(s)	230, 243
AcoI	YGGCCR	2 cut(s)	214, 360
AcsI	RAATTY	1 cut(s)	385
AfaI	GTAC	2 cut(s)	276, 375
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	230, 243
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	3 cut(s)	214, 341, 360
ApoI	RAATTY	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	394
BaeI	ACNNNNGTAYC	2 cut(s)	29, 62
BalI	TGGCCA	2 cut(s)	216, 362
BamHI	GGATCC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	42
BclI	TGATCA	1 cut(s)	22
BfaI	CTAG	2 cut(s)	299, 403
Bme1390I	CCNGG	1 cut(s)	42
BmeT110I	CYCGRG	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	272, 309
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	272, 309
BshFI	GGCC	3 cut(s)	216, 343, 362
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	394
BsiWI	CGTACG	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	304
BsnI	GGCC	3 cut(s)	216, 343, 362
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	22, 235, 351
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	3 cut(s)	216, 343, 362
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	230, 243
BsrI	ACTGG	2 cut(s)	272, 309
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	3 cut(s)	22, 235, 351
BssNAI	GTATAC	1 cut(s)	102
Bst1107I	GTATAC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	42
BstKTI	GATC	3 cut(s)	25, 238, 354
BstMBI	GATC	3 cut(s)	22, 235, 351
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	216, 343, 362
BsuTUI	ATCGAT	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	275, 374
CviAII	CATG	3 cut(s)	148, 203, 290
CviJI	RGCY	7 cut(s)	68, 146, 216, 266, 343, 362, 402
CviKI_1	RGCY	7 cut(s)	68, 146, 216, 266, 343, 362, 402
CviQI	GTAC	2 cut(s)	275, 374
DpnI	GATC	3 cut(s)	24, 237, 353
DpnII	GATC	3 cut(s)	22, 235, 351
EaeI	YGGCCR	2 cut(s)	214, 360
Eco88I	CYCGRG	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	151, 206, 293
FatI	CATG	3 cut(s)	147, 202, 289
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	101
FspBI	CTAG	2 cut(s)	299, 403
HaeIII	GGCC	3 cut(s)	216, 343, 362
Hin1II	CATG	3 cut(s)	151, 206, 293
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	102, 277
Hpy188I	TCNGA	2 cut(s)	10, 85
Hpy188III	TCNNGA	3 cut(s)	50, 323, 394
Hpy8I	GTNNAC	2 cut(s)	102, 277
HpyCH4V	TGCA	3 cut(s)	4, 289, 318
Hsp92II	CATG	3 cut(s)	151, 206, 293
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	22, 235, 351
LmnI	GCTCC	1 cut(s)	263
MaeI	CTAG	2 cut(s)	299, 403
MalI	GATC	3 cut(s)	24, 237, 353
MboI	GATC	3 cut(s)	22, 235, 351
MboII	GAAGA	1 cut(s)	347
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	2 cut(s)	216, 362
MluCI	AATT	4 cut(s)	183, 284, 378, 385
MluNI	TGGCCA	2 cut(s)	216, 362
MnlI	CCTC	1 cut(s)	247
Mox20I	TGGCCA	2 cut(s)	216, 362
MscI	TGGCCA	2 cut(s)	216, 362
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	313
Msp20I	TGGCCA	2 cut(s)	216, 362
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	3 cut(s)	22, 235, 351
NlaIII	CATG	3 cut(s)	151, 206, 293
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	44
NspI	RCATGY	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	394
Pfl23II	CGTACG	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspLI	CGTACG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	276, 375
RsaNI	GTAC	2 cut(s)	275, 374
RseI	CAYNNNNRTG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	3 cut(s)	22, 235, 351
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	43, 62, 258, 268
Sfr274I	CTCGAG	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	321, 394
SmoI	CTYRAG	2 cut(s)	321, 394
Sse9I	AATT	4 cut(s)	183, 284, 378, 385
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	2 cut(s)	299, 403
StyD4I	CCNGG	1 cut(s)	40
TaqI	TCGA	2 cut(s)	354, 395
TasI	AATT	4 cut(s)	183, 284, 378, 385
TatI	WGTACW	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	1 cut(s)	309
TspRI	CASTG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	2 cut(s)	299, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.