Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

4543280 .. 4544212

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22279

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGAAATCTAATGCTATTCGCCATTACTCTGCTCAAGAACTCATCAGGACAACCAATAAAATTTGATCCTTCTGGCATTATACCGGAGGGTTCATTCTACTATAGAGGTTTTCTAGACAACCGATTGATCATCATTAAGAAGAGAGAGGGGAGGGATGGGCTCTCTAGGAATTTCAAGAGGGCGAGGGAGGAGGCTATTCGTGATATTATAATTTCAATGCAGATGAGCACTCAAAAGAATGTATTGAAATTGTTGGGCTGCTGTTTAGAGTTCCCTATACCAGCTCTGGTGCATGAGTATGCAACGCATGGCTGTGTTCTTAACGACGAAGGAGGTTTCTGGTCTAATGAATCTCTACCATGGAAAACTAGACTACGTATTGCAAAGCAGCTGGCTAGTGCAATTACATATCTACATACAGCCTTTCCAAGACCTATCATTCACAGGCATCTGAGGCCCCATTGTATTTTCTTGGATGATGACTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACCATTCTTTCTGAGAAATCCCATGTTCAAGATGTTGTGATAAAAGGGACAATGTGGTACCTTAGCCCTGACTTTGGTGTGATTTTACTTGGCTTCTTGGCGGGACGGAAACTTTTGGCAGGACATGACGACCTTATAAAATCGGTGAAATTGCATGCTTGTGATGGCCAGATTCAAACAATTGTTGATCCTAAAATACTCGATGAGTTAGGGGGAGGTAATGAGCCAACACAACTTCAGTTGCATGATTTCCTAGCACTAGCATGGTTATGCAGTACTCGAGATGAAAGTGAACTGAGGCCAGATATGATTGATGTGGCCAAAGAACTGATGCGAATTGAGAAGTCTATCTGGCCCCCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

295

Amino Acids

33.46

Weight (kDa)

7.13

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 198	9.5e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	63 - 186	1.1e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	212, 659
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	2 cut(s)	62, 704
AcoI	YGGCCR	2 cut(s)	688, 840
AcsI	RAATTY	2 cut(s)	62, 172
AcuI	CTGAAG	1 cut(s)	743
AfaI	GTAC	2 cut(s)	581, 799
AfiI	CCNNNNNNNGG	1 cut(s)	596
AgsI	TTSAA	5 cut(s)	178, 219, 250, 551, 698
AluBI	AGCT	2 cut(s)	287, 394
AluI	AGCT	2 cut(s)	287, 394
Alw21I	GWGCWC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	62, 704
Ama87I	CYCGRG	1 cut(s)	801
AoxI	GGCC	5 cut(s)	458, 688, 821, 840, 875
ApeKI	GCWGC	2 cut(s)	261, 391
ApoI	RAATTY	2 cut(s)	62, 172
Asp718I	GGTACC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	459, 876
AsuHPI	GGTGA	1 cut(s)	679
AvaI	CYCGRG	1 cut(s)	801
BalI	TGGCCA	2 cut(s)	690, 842
BanI	GGYRCC	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	248, 403
BccI	CCATC	2 cut(s)	152, 680
BclI	TGATCA	1 cut(s)	129
BfaI	CTAG	7 cut(s)	116, 168, 372, 399, 776, 782, 886
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	2 cut(s)	262, 392
BlsI	GCNGC	2 cut(s)	263, 393
BmcAI	AGTACT	1 cut(s)	799
BmeT110I	CYCGRG	1 cut(s)	801
BmgT120I	GGNCC	2 cut(s)	459, 876
BmiI	GGNNCC	3 cut(s)	461, 581, 878
BmsI	GCATC	2 cut(s)	460, 843
Bpu10I	CCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	163, 484
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseMII	CTCAG	3 cut(s)	446, 525, 809
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	248, 403
BshFI	GGCC	5 cut(s)	460, 690, 823, 842, 877
BshNI	GGYRCC	1 cut(s)	579
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	583, 639
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmFI	GGGAC	2 cut(s)	583, 639
BsnI	GGCC	5 cut(s)	460, 690, 823, 842, 877
BsoBI	CYCGRG	1 cut(s)	801
Bsp1286I	GDGCHC	2 cut(s)	165, 233
Bsp143I	GATC	3 cut(s)	67, 129, 709
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	5 cut(s)	460, 690, 823, 842, 877
BspCNI	CTCAG	3 cut(s)	447, 526, 810
BspLI	GGNNCC	3 cut(s)	461, 581, 878
BspPI	GGATC	2 cut(s)	62, 704
BspT107I	GGYRCC	1 cut(s)	579
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	3 cut(s)	67, 129, 709
BssT1I	CCWWGG	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	396, 678
BstDEI	CTNAG	4 cut(s)	455, 534, 584, 818
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	163, 484
BstKTI	GATC	3 cut(s)	70, 132, 712
BstMBI	GATC	3 cut(s)	67, 129, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	103
BstSNI	TACGTA	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	248, 403
BsuRI	GGCC	5 cut(s)	460, 690, 823, 842, 877
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	163, 484
Cac8I	GCNNGC	2 cut(s)	396, 678
Cfr13I	GGNCC	2 cut(s)	459, 876
Csp6I	GTAC	2 cut(s)	580, 798
CviAII	CATG	8 cut(s)	296, 311, 363, 545, 647, 677, 767, 786
CviQI	GTAC	2 cut(s)	580, 798
DdeI	CTNAG	4 cut(s)	455, 534, 584, 818
DpnI	GATC	3 cut(s)	69, 131, 711
DpnII	GATC	3 cut(s)	67, 129, 709
EaeI	YGGCCR	2 cut(s)	688, 840
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco105I	TACGTA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	743
Eco88I	CYCGRG	1 cut(s)	801
EcoO109I	RGGNCCY	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	8 cut(s)	299, 314, 366, 548, 650, 680, 770, 789
FaqI	GGGAC	2 cut(s)	583, 639
FatI	CATG	8 cut(s)	295, 310, 362, 544, 646, 676, 766, 785
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	262, 392
FokI	GGATG	2 cut(s)	170, 491
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	262, 392
FspBI	CTAG	7 cut(s)	116, 168, 372, 399, 776, 782, 886
GluI	GCNGC	2 cut(s)	262, 392
HaeIII	GGCC	5 cut(s)	460, 690, 823, 842, 877
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	8 cut(s)	299, 314, 366, 548, 650, 680, 770, 789
HinfI	GANTC	2 cut(s)	353, 694
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	1 cut(s)	815
Hpy188I	TCNGA	2 cut(s)	456, 535
Hpy188III	TCNNGA	7 cut(s)	37, 48, 116, 178, 203, 551, 803
Hpy8I	GTNNAC	1 cut(s)	815
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	81, 326
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	8 cut(s)	223, 295, 305, 386, 404, 676, 766, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	4 cut(s)	455, 534, 584, 818
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	8 cut(s)	299, 314, 366, 548, 650, 680, 770, 789
KpnI	GGTACC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	67, 129, 709
Lsp1109I	GCAGC	2 cut(s)	248, 403
LweI	GCATC	2 cut(s)	460, 843
MaeI	CTAG	7 cut(s)	116, 168, 372, 399, 776, 782, 886
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	3 cut(s)	69, 131, 711
MboI	GATC	3 cut(s)	67, 129, 709
MboII	GAAGA	1 cut(s)	154
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	2 cut(s)	165, 233
MlsI	TGGCCA	2 cut(s)	690, 842
MluCI	AATT	9 cut(s)	62, 172, 213, 251, 405, 497, 671, 702, 858
MluNI	TGGCCA	2 cut(s)	690, 842
Mox20I	TGGCCA	2 cut(s)	690, 842
MscI	TGGCCA	2 cut(s)	690, 842
MseI	TTAA	2 cut(s)	138, 324
MslI	CAYNNNNRTG	5 cut(s)	300, 315, 681, 784, 790
Msp20I	TGGCCA	2 cut(s)	690, 842
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	702
MwoI	GCNNNNNNNGC	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	67, 129, 709
NlaIII	CATG	8 cut(s)	299, 314, 366, 548, 650, 680, 770, 789
NlaIV	GGNNCC	3 cut(s)	461, 581, 878
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	353, 694
PkrI	GCNGC	2 cut(s)	263, 393
Ppu21I	YACGTR	1 cut(s)	380
PsiI	TTATAA	2 cut(s)	212, 659
PspN4I	GGNNCC	3 cut(s)	461, 581, 878
PspPI	GGNCC	2 cut(s)	459, 876
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	581, 799
RsaNI	GTAC	2 cut(s)	580, 798
RseI	CAYNNNNRTG	5 cut(s)	300, 315, 681, 784, 790
SaqAI	TTAA	2 cut(s)	138, 324
SatI	GCNGC	2 cut(s)	262, 392
Sau3AI	GATC	3 cut(s)	67, 129, 709
Sau96I	GGNCC	2 cut(s)	459, 876
ScaI	AGTACT	1 cut(s)	799
SduI	GDGCHC	2 cut(s)	165, 233
SetI	ASST	9 cut(s)	112, 289, 340, 382, 396, 439, 585, 657, 742
SfaNI	GCATC	2 cut(s)	460, 843
SfcI	CTRYAG	1 cut(s)	103
Sfr274I	CTCGAG	1 cut(s)	801
SlaI	CTCGAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	5 cut(s)	300, 315, 681, 784, 790
SmlI	CTYRAG	2 cut(s)	35, 801
SmoI	CTYRAG	2 cut(s)	35, 801
SnaBI	TACGTA	1 cut(s)	380
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	9 cut(s)	62, 172, 213, 251, 405, 497, 671, 702, 858
SsiI	CCGC	1 cut(s)	623
SspMI	CTAG	7 cut(s)	116, 168, 372, 399, 776, 782, 886
StyI	CCWWGG	1 cut(s)	362
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	723, 802
TasI	AATT	9 cut(s)	62, 172, 213, 251, 405, 497, 671, 702, 858
TatI	WGTACW	1 cut(s)	797
TfiI	GAWTC	2 cut(s)	353, 694
Tru1I	TTAA	2 cut(s)	138, 324
Tru9I	TTAA	2 cut(s)	138, 324
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	261, 391
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	3 cut(s)	84, 366, 822
TspGWI	ACGGA	1 cut(s)	643
XapI	RAATTY	2 cut(s)	62, 172
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	680
XhoI	CTCGAG	1 cut(s)	801
XspI	CTAG	7 cut(s)	116, 168, 372, 399, 776, 782, 886
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.