Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

18459975 .. 18461186

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG142400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGACGAAAGGGGTAGAGATTTCTTCAACAACGGAAGCATCTTATTAGAGGATCTCATTGCTTCTTGTGATCGAAAATCTAATCCTATTCGCAATTACTCTGCTTCTGAGTTCATCAGGGCCACCAACAATTTTGATCCTTCCTGCATCATACAAAATTGTACGCCTACTGAGGCTAGTCAATTTCATCGTTTTATACATGTTTACCATGGTTACAAAGTGTTCAAGGGTTTTCTAGACGATCGATATATCATTGTTAAGAAGTTCATGGGGACCCGGGAAGAAACTAGGTCCCTGGCTATTCGTGACATTATCGTTTCAATGCAAATGAGCAACCTTGAATGTCTTGAAGCTCTTGGGGTGCTGTTTAGAGTTCCCTATACCAGCTCTGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

15.17

Weight (kDa)

6.82

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	60, 131
AfaI	GTAC	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	28, 226, 321, 341, 350
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	353, 387
AluI	AGCT	2 cut(s)	353, 387
AlwI	GGATC	2 cut(s)	60, 131
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	120, 273, 291
AsuC2I	CCSGG	2 cut(s)	277, 278
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	2 cut(s)	273, 291
BciT130I	CCWGG	1 cut(s)	296
BcnI	CCSGG	2 cut(s)	277, 278
BfaI	CTAG	3 cut(s)	177, 236, 288
Bme1390I	CCNGG	3 cut(s)	277, 278, 296
Bme18I	GGWCC	2 cut(s)	273, 291
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	3 cut(s)	120, 273, 291
BmiI	GGNNCC	3 cut(s)	274, 275, 293
BmrFI	CCNGG	3 cut(s)	277, 278, 296
BmsI	GCATC	2 cut(s)	48, 156
BpuMI	CCSGG	2 cut(s)	277, 278
Bsa29I	ATCGAT	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	208, 276, 294
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	296
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	3 cut(s)	208, 276, 294
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	99, 162
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	2 cut(s)	277, 286
BsmFI	GGGAC	2 cut(s)	277, 286
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	52, 70, 136, 241
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	100, 163
BspDI	ATCGAT	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	274, 275, 293
BspPI	GGATC	2 cut(s)	60, 131
BsrDI	GCAATG	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	208, 276, 294
BssMI	GATC	4 cut(s)	52, 70, 136, 241
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	108, 171
BstDSI	CCRYGG	1 cut(s)	208
BstKTI	GATC	4 cut(s)	55, 73, 139, 244
BstMBI	GATC	4 cut(s)	52, 70, 136, 241
BstMCI	CGRYCG	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	275, 276, 294
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	122
BsuTUI	ATCGAT	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	120, 273, 291
Cfr9I	CCCGGG	1 cut(s)	276
ClaI	ATCGAT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	4 cut(s)	200, 209, 268, 396
CviJI	RGCY	5 cut(s)	122, 176, 299, 353, 387
CviKI_1	RGCY	5 cut(s)	122, 176, 299, 353, 387
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	2 cut(s)	108, 171
DpnI	GATC	4 cut(s)	54, 72, 138, 243
DpnII	GATC	4 cut(s)	52, 70, 136, 241
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	273, 291
Eco88I	CYCGRG	1 cut(s)	276
EcoO109I	RGGNCCY	2 cut(s)	273, 291
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	203, 212, 271, 399
FaiI	YATR	8 cut(s)	152, 197, 201, 210, 249, 269, 381, 397
FaqI	GGGAC	2 cut(s)	277, 286
FatI	CATG	4 cut(s)	199, 208, 267, 395
FspBI	CTAG	3 cut(s)	177, 236, 288
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	277
Hin1II	CATG	4 cut(s)	203, 212, 271, 399
HpaII	CCGG	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	236, 305, 347
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	147, 325, 395
HpyF3I	CTNAG	2 cut(s)	108, 171
Hsp92II	CATG	4 cut(s)	203, 212, 271, 399
KflI	GGGWCCC	1 cut(s)	273
Kzo9I	GATC	4 cut(s)	52, 70, 136, 241
LpnPI	CCDG	6 cut(s)	103, 157, 281, 290, 308, 375
LweI	GCATC	2 cut(s)	48, 156
MaeI	CTAG	3 cut(s)	177, 236, 288
MaeIII	GTNAC	2 cut(s)	212, 305
MalI	GATC	4 cut(s)	54, 72, 138, 243
MboI	GATC	4 cut(s)	52, 70, 136, 241
MboII	GAAGA	2 cut(s)	16, 293
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	4 cut(s)	94, 130, 157, 182
MnlI	CCTC	2 cut(s)	43, 166
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	3 cut(s)	277, 278, 296
MvaI	CCWGG	1 cut(s)	296
NciI	CCSGG	2 cut(s)	277, 278
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	4 cut(s)	52, 70, 136, 241
NlaIII	CATG	4 cut(s)	203, 212, 271, 399
NlaIV	GGNNCC	3 cut(s)	274, 275, 293
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	203
PciI	ACATGT	1 cut(s)	199
Ple19I	CGATCG	1 cut(s)	244
PpuMI	RGGWCCY	2 cut(s)	273, 291
PscI	ACATGT	1 cut(s)	199
Psp5II	RGGWCCY	2 cut(s)	273, 291
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	274, 275, 293
PspPI	GGNCC	3 cut(s)	120, 273, 291
PspPPI	RGGWCCY	2 cut(s)	273, 291
PsuI	RGATCY	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	52, 70, 136, 241
Sau96I	GGNCC	3 cut(s)	120, 273, 291
ScrFI	CCNGG	3 cut(s)	277, 278, 296
SetI	ASST	4 cut(s)	293, 339, 355, 389
SfaNI	GCATC	2 cut(s)	48, 156
SinI	GGWCC	2 cut(s)	273, 291
SmaI	CCCGGG	1 cut(s)	278
Sse9I	AATT	4 cut(s)	94, 130, 157, 182
SspMI	CTAG	3 cut(s)	177, 236, 288
StyD4I	CCNGG	3 cut(s)	275, 276, 294
StyI	CCWWGG	1 cut(s)	208
TaqI	TCGA	2 cut(s)	73, 244
TasI	AATT	4 cut(s)	94, 130, 157, 182
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	103, 176, 256
TspGWI	ACGGA	1 cut(s)	48
TspMI	CCCGGG	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	273, 291
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	203
XmaI	CCCGGG	1 cut(s)	276
XspI	CTAG	3 cut(s)	177, 236, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.