Rw6G004240

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
6838591 .. 6839969
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004240.1

Sequence Viewer

Length: 1038 bp
ATGCTATCTAAACTCTTGTACTCTTTGCTTCCATGTTTGAGAATGGAGGAAAAATATGCTTTGGATAATGGAAGCAAATTATTAGAGGATCTGATTGCTTCTTGTGATGGAAAATCTAATCCCATTCGCCATTACTCTGCTGATGAACTTGTCAGGGCAACCAACAACTTCGATCCTTCTTGCCTTATAGGTCGTGATGGATGGTCATGTTCATATCAGGGTTTTCTAGACAACCGATTGGTTATGATTAAGCAGATGGAAACTGCATATTTTAATGAGCACATGAGAGATATGGCTATTCGTGACATTATAATATCAATGCAGATGAGCACTCATAAGAATGTTTTGAAACTGTTGGGCTGTTGCTTAGAGTTCCCTGTACCGGCTCTGGTGCACGAATATGCAGCAAAAGGATTTCTGAACCGTGAAGGAGGTTATGGGGATAATGAGTCCCTCCCGTGGAAAACTAGACTACGTATTGCGAAGCAGGTTGCAAATGCAATAACATATCTCCATACAGCCTTCCCCAGACCCATCATCTATAGAGACATAAAGCCCACAAATATTCTTTTGGACCATGACTTTGCCCCCAAAATCTTTGACTTCTCACGTTCCATAACCATTCCACCTGAGCAATCGCATGTCGAAGATCGTGTGATTGGGACAATGGGGTACCTTGACCCCGAGTATATGATGTCTGGTTACATTACAGAGAAGACTGATGTTTATAGCTTTGGCGTCATTTTACTTGTTTTCTTGAGTGGACGAGCAGTTTATCAACAAAATCAAGCACGAGAAGAATTCGAACTTGTGTCATATGTGAGATTACATGCTTCTGATGACCAGTTTCTGACTATTGTGGATCCTAAAATACTTGAGGAGATAAAAGGAGAAGATGAGCAACCACAACAGCAGCAGTTGGATAATTTCCTAGCACTGGGATTGTTATGCACTCAACAGGAACCTGAACGAAGGCCAGATATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAAGTCTATCAATCCTTGTTAG

Protein Analysis

345

Amino Acids

39.59

Weight (kDa)

5.22

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 63 - 327 1.1e-31 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 78 - 334 3.2e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 478
Acc65I GGTACC 1 cut(s) 672
AccB1I GGYRCC 1 cut(s) 672
AclWI GGATC 4 cut(s) 96, 167, 857, 870
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 4 cut(s) 20, 381, 674, 1008
AfiI CCNNNNNNNGG 3 cut(s) 382, 459, 937
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 1 cut(s) 732
AluI AGCT 1 cut(s) 732
Alw21I GWGCWC 3 cut(s) 282, 332, 396
Alw26I GTCTC 1 cut(s) 540
Alw44I GTGCAC 1 cut(s) 392
AlwI GGATC 4 cut(s) 96, 167, 857, 870
AlwNI CAGNNNCTG 1 cut(s) 850
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 2 cut(s) 974, 993
ApaLI GTGCAC 1 cut(s) 392
ApeKI GCWGC 2 cut(s) 404, 913
ApoI RAATTY 1 cut(s) 800
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
Asp718I GGTACC 1 cut(s) 672
AspS9I GGNCC 1 cut(s) 574
AsuII TTCGAA 1 cut(s) 804
AvaI CYCGRG 1 cut(s) 683
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 396
BalI TGGCCA 1 cut(s) 995
BamHI GGATCC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 672
BauI CACGAG 1 cut(s) 792
BbsI GAAGAC 1 cut(s) 722
Bbv12I GWGCWC 3 cut(s) 282, 332, 396
BbvI GCAGC 2 cut(s) 416, 925
BccI CCATC 5 cut(s) 101, 191, 195, 250, 542
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 3 cut(s) 227, 468, 932
BfmI CTRYAG 1 cut(s) 541
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 2 cut(s) 405, 914
BlsI GCNGC 2 cut(s) 406, 915
Bme18I GGWCC 1 cut(s) 574
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 3 cut(s) 674, 864, 963
BmrI ACTGGG 1 cut(s) 947
BmuI ACTGGG 1 cut(s) 947
BpiI GAAGAC 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 2 cut(s) 778, 896
Bsa29I ATCGAT 1 cut(s) 987
BsaAI YACGTR 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 1 cut(s) 458
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 459, 937
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 844, 942
BseCI ATCGAT 1 cut(s) 987
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 382, 459, 937
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 2 cut(s) 844, 942
BseRI GAGGAG 1 cut(s) 893
BseSI GKGCMC 1 cut(s) 396
BseXI GCAGC 2 cut(s) 416, 925
BshFI GGCC 2 cut(s) 976, 995
BshNI GGYRCC 1 cut(s) 672
BshVI ATCGAT 1 cut(s) 987
BsiHKAI GWGCWC 3 cut(s) 282, 332, 396
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 2 cut(s) 436, 676
BslI CCNNNNNNNGG 3 cut(s) 382, 459, 937
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 2 cut(s) 436, 676
BsnI GGCC 2 cut(s) 976, 995
BsoBI CYCGRG 1 cut(s) 683
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 3 cut(s) 282, 332, 396
Bsp143I GATC 5 cut(s) 88, 172, 649, 862, 984
BspANI GGCC 2 cut(s) 976, 995
BspCNI CTCAG 1 cut(s) 622
BspDI ATCGAT 1 cut(s) 987
BspLI GGNNCC 3 cut(s) 674, 864, 963
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 4 cut(s) 96, 167, 857, 870
BspT104I TTCGAA 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 2 cut(s) 844, 942
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 5 cut(s) 88, 172, 649, 862, 984
BssNI GRCGYC 1 cut(s) 738
BssSI CACGAG 1 cut(s) 792
Bst2BI CACGAG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 354, 425
BstACI GRCGYC 1 cut(s) 738
BstBAI YACGTR 1 cut(s) 476
BstBI TTCGAA 1 cut(s) 804
BstDEI CTNAG 2 cut(s) 367, 630
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 5 cut(s) 91, 175, 652, 865, 987
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 5 cut(s) 88, 172, 649, 862, 984
BstNSI RCATGY 2 cut(s) 644, 833
BstSFI CTRYAG 1 cut(s) 541
BstSLI GKGCMC 1 cut(s) 396
BstSNI TACGTA 1 cut(s) 476
BstV1I GCAGC 2 cut(s) 416, 925
BstV2I GAAGAC 1 cut(s) 722
BstX2I RGATCY 2 cut(s) 88, 862
BstYI RGATCY 2 cut(s) 88, 862
Bsu15I ATCGAT 1 cut(s) 987
BsuRI GGCC 2 cut(s) 976, 995
BsuTUI ATCGAT 1 cut(s) 987
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 935
BveI ACCTGC 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 850
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 574
ClaI ATCGAT 1 cut(s) 987
CseI GACGC 1 cut(s) 727
Csp6I GTAC 4 cut(s) 19, 380, 673, 1007
CviAII CATG 6 cut(s) 33, 207, 283, 578, 641, 830
CviJI RGCY 8 cut(s) 296, 360, 386, 521, 556, 732, 976, 995
CviKI_1 RGCY 8 cut(s) 296, 360, 386, 521, 556, 732, 976, 995
CviQI GTAC 4 cut(s) 19, 380, 673, 1007
DdeI CTNAG 2 cut(s) 367, 630
DpnI GATC 5 cut(s) 90, 174, 651, 864, 986
DpnII GATC 5 cut(s) 88, 172, 649, 862, 984
EaeI YGGCCR 1 cut(s) 993
Eco105I TACGTA 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 800
FaeI CATG 6 cut(s) 36, 210, 286, 581, 644, 833
FaqI GGGAC 2 cut(s) 436, 676
FatI CATG 6 cut(s) 32, 206, 282, 577, 640, 829
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 2 cut(s) 405, 914
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 405, 914
FspBI CTAG 3 cut(s) 227, 468, 932
GluI GCNGC 2 cut(s) 405, 914
HaeIII GGCC 2 cut(s) 976, 995
HapII CCGG 1 cut(s) 383
HgaI GACGC 1 cut(s) 727
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 6 cut(s) 36, 210, 286, 581, 644, 833
HinfI GANTC 1 cut(s) 449
HpaII CCGG 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 394, 764
Hpy188I TCNGA 4 cut(s) 93, 420, 838, 852
Hpy188III TCNNGA 4 cut(s) 194, 227, 302, 757
Hpy8I GTNNAC 2 cut(s) 394, 764
HpyAV CCTTC 4 cut(s) 186, 422, 532, 966
HpyCH4III ACNGT 2 cut(s) 354, 425
HpyCH4IV ACGT 2 cut(s) 475, 610
HpyCH4V TGCA 7 cut(s) 266, 322, 394, 404, 494, 500, 951
HpyF3I CTNAG 2 cut(s) 367, 630
HpySE526I ACGT 2 cut(s) 475, 610
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 6 cut(s) 36, 210, 286, 581, 644, 833
KpnI GGTACC 1 cut(s) 676
Kzo9I GATC 5 cut(s) 88, 172, 649, 862, 984
Lsp1109I GCAGC 2 cut(s) 416, 925
MaeI CTAG 3 cut(s) 227, 468, 932
MaeII ACGT 2 cut(s) 475, 610
MaeIII GTNAC 2 cut(s) 302, 701
MalI GATC 5 cut(s) 90, 174, 651, 864, 986
MboI GATC 5 cut(s) 88, 172, 649, 862, 984
MboII GAAGA 4 cut(s) 659, 727, 809, 905
MflI RGATCY 2 cut(s) 88, 862
MhlI GDGCHC 3 cut(s) 282, 332, 396
MlsI TGGCCA 1 cut(s) 995
MluCI AATT 4 cut(s) 77, 800, 925, 1011
MluNI TGGCCA 1 cut(s) 995
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 900
MnlI CCTC 5 cut(s) 40, 79, 425, 464, 871
Mox20I TGGCCA 1 cut(s) 995
MscI TGGCCA 1 cut(s) 995
MseI TTAA 2 cut(s) 249, 273
MslI CAYNNNNRTG 2 cut(s) 339, 399
Msp20I TGGCCA 1 cut(s) 995
MspI CCGG 1 cut(s) 383
NdeI CATATG 1 cut(s) 817
NdeII GATC 5 cut(s) 88, 172, 649, 862, 984
NlaIII CATG 6 cut(s) 36, 210, 286, 581, 644, 833
NlaIV GGNNCC 3 cut(s) 674, 864, 963
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 2 cut(s) 644, 833
NspV TTCGAA 1 cut(s) 804
PkrI GCNGC 2 cut(s) 406, 915
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 476
PsiI TTATAA 1 cut(s) 311
PspN4I GGNNCC 3 cut(s) 674, 864, 963
PspPI GGNCC 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 850
PsuI RGATCY 2 cut(s) 88, 862
RsaI GTAC 4 cut(s) 20, 381, 674, 1008
RsaNI GTAC 4 cut(s) 19, 380, 673, 1007
RseI CAYNNNNRTG 2 cut(s) 339, 399
SaqAI TTAA 2 cut(s) 249, 273
SatI GCNGC 2 cut(s) 405, 914
Sau3AI GATC 5 cut(s) 88, 172, 649, 862, 984
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 1 cut(s) 458
SduI GDGCHC 3 cut(s) 282, 332, 396
SetI ASST 9 cut(s) 193, 436, 478, 492, 613, 631, 678, 734, 967
SfcI CTRYAG 1 cut(s) 541
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 1 cut(s) 574
SmiMI CAYNNNNRTG 2 cut(s) 339, 399
SmlI CTYRAG 2 cut(s) 757, 875
SmoI CTYRAG 2 cut(s) 757, 875
SnaBI TACGTA 1 cut(s) 476
Sse9I AATT 4 cut(s) 77, 800, 925, 1011
SspI AATATT 1 cut(s) 565
SspMI CTAG 3 cut(s) 227, 468, 932
TaaI ACNGT 2 cut(s) 354, 425
TaiI ACGT 2 cut(s) 478, 613
TaqI TCGA 4 cut(s) 171, 645, 804, 987
TasI AATT 4 cut(s) 77, 800, 925, 1011
TatI WGTACW 1 cut(s) 18
Tru1I TTAA 2 cut(s) 249, 273
Tru9I TTAA 2 cut(s) 249, 273
TscAI CASTG 1 cut(s) 942
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 404, 913
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 159, 201
TspRI CASTG 1 cut(s) 942
VneI GTGCAC 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 1 cut(s) 800
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 2 cut(s) 644, 833
XspI CTAG 3 cut(s) 227, 468, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.