Rh6AG048100

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
6972902 .. 6973624
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG048100.1

Sequence Viewer

Length: 723 bp
ATGCAGATGAGCACTCATAAGAATGTTTTGAAACTGTTGGGCTGCTGCTTAGAGTTCCGTGTACCAGCTCTGGTGCATGAATATGCAGCCAAAGGAGTTCTCAACCGGGCCGGAGGTTATGGGGATAATGAGTCCCTCCCATGGAAAACTAGATTGTGTATTTCGAAGCAGCTTGCAAATGCAGTTACATATCTCCATACAGCCTTCCCCAGACCCATCATTCATAAAAACCTCATGCCCACAAGTATTTTCTTGGACCAGGACTTTGCCCCCAAATTATTTGACTTCTCAATTTCCGTAACCATTCCTCCTGAGCAATCACATGTCTATGAAAGCAGCGGGGGTGGACTGGTCGGGTACCTTGACCCTGTGTATATGAGGTCTGGTTACATTACAGAAAAGACTGATGTTTATAACTTTGGTGTCATTTTACTTGTTTTCTTGAGTGGACGACGTCCTGTTCATCTAAATCAAGCAGTAGAAGAATTCAAACTTGTGTCAGATGTGAGATTACATGCTTCTGATGACCAGTTCCTTACGATTGTGGATCCTAAAATACTTGAGGAGTTAAAAGGAGAAGATGAGCAAGCACAACAGCAGCAGTTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAAGAGGAAAGTGAACCAAGGCCAGATATGATCGATGTGGCCAAACAACTTGTACGAATTGAGAAGTCTATCAATCCTTGTTAG

Protein Analysis

240

Amino Acids

27.04

Weight (kDa)

5.61

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 230 1.4e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 169 1e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AatII GACGTC 1 cut(s) 457
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AciI CCGC 1 cut(s) 339
AclWI GGATC 2 cut(s) 542, 555
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 454
AfaI GTAC 3 cut(s) 63, 359, 693
AfiI CCNNNNNNNGG 2 cut(s) 141, 622
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 31, 490
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 68, 172
AluI AGCT 2 cut(s) 68, 172
Alw21I GWGCWC 1 cut(s) 14
AlwI GGATC 2 cut(s) 542, 555
AoxI GGCC 3 cut(s) 108, 659, 678
ApeKI GCWGC 6 cut(s) 42, 45, 86, 169, 336, 598
ApoI RAATTY 1 cut(s) 485
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
Asp718I GGTACC 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 108, 256
AsuC2I CCSGG 1 cut(s) 107
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 256
BalI TGGCCA 1 cut(s) 680
BamHI GGATCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 6 cut(s) 29, 32, 98, 181, 348, 610
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 107
BfaI CTAG 2 cut(s) 150, 617
BisI GCNGC 6 cut(s) 43, 46, 87, 170, 337, 599
BlsI GCNGC 6 cut(s) 44, 47, 88, 171, 338, 600
Bme1390I CCNGG 2 cut(s) 107, 260
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 108, 256
BmiI GGNNCC 2 cut(s) 359, 549
BmrFI CCNGG 2 cut(s) 107, 260
Bpu10I CCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 3 cut(s) 463, 581, 624
BpuMI CCSGG 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 140, 656
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 622
Bse1I ACTGG 3 cut(s) 354, 529, 627
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 672
BseDI CCNNGG 2 cut(s) 140, 656
BseLI CCNNNNNNNGG 2 cut(s) 141, 622
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 3 cut(s) 354, 529, 627
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 6 cut(s) 29, 32, 98, 181, 348, 610
BshFI GGCC 3 cut(s) 110, 661, 680
BshNI GGYRCC 1 cut(s) 357
BshVI ATCGAT 1 cut(s) 672
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 106, 111
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 141, 622
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 3 cut(s) 110, 661, 680
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 547, 669
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 1 cut(s) 339
BspANI GGCC 3 cut(s) 110, 661, 680
BspCNI CTCAG 1 cut(s) 304
BspDI ATCGAT 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 359, 549
BspPI GGATC 2 cut(s) 542, 555
BspT104I TTCGAA 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 357
BsrI ACTGG 3 cut(s) 354, 529, 627
BssECI CCNNGG 2 cut(s) 140, 656
BssMI GATC 2 cut(s) 547, 669
BssNI GRCGYC 1 cut(s) 454
BssT1I CCWWGG 2 cut(s) 140, 656
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 454
BstAPI GCANNNNNTGC 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 174, 588
BstDEI CTNAG 2 cut(s) 49, 312
BstDSI CCRYGG 1 cut(s) 140
BstKTI GATC 2 cut(s) 550, 672
BstMBI GATC 2 cut(s) 547, 669
BstMWI GCNNNNNNNGC 1 cut(s) 604
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 2 cut(s) 326, 518
BstSCI CCNGG 2 cut(s) 105, 258
BstV1I GCAGC 6 cut(s) 29, 32, 98, 181, 348, 610
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
Bsu15I ATCGAT 1 cut(s) 672
BsuRI GGCC 3 cut(s) 110, 661, 680
BsuTUI ATCGAT 1 cut(s) 672
BtgI CCRYGG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 2 cut(s) 174, 588
Cfr13I GGNCC 2 cut(s) 108, 256
ClaI ATCGAT 1 cut(s) 672
Csp6I GTAC 3 cut(s) 62, 358, 692
CviAII CATG 6 cut(s) 77, 141, 235, 323, 515, 608
CviJI RGCY 8 cut(s) 42, 68, 89, 110, 172, 203, 661, 680
CviKI_1 RGCY 8 cut(s) 42, 68, 89, 110, 172, 203, 661, 680
CviQI GTAC 3 cut(s) 62, 358, 692
DdeI CTNAG 2 cut(s) 49, 312
DpnI GATC 2 cut(s) 549, 671
DpnII GATC 2 cut(s) 547, 669
EaeI YGGCCR 1 cut(s) 678
Eco130I CCWWGG 2 cut(s) 140, 656
Eco47I GGWCC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 140, 656
ErhI CCWWGG 2 cut(s) 140, 656
FaeI CATG 6 cut(s) 80, 144, 238, 326, 518, 611
FaqI GGGAC 1 cut(s) 118
FatI CATG 6 cut(s) 76, 140, 234, 322, 514, 607
FauI CCCGC 1 cut(s) 332
Fnu4HI GCNGC 6 cut(s) 43, 46, 87, 170, 337, 599
Fsp4HI GCNGC 6 cut(s) 43, 46, 87, 170, 337, 599
FspBI CTAG 2 cut(s) 150, 617
GluI GCNGC 6 cut(s) 43, 46, 87, 170, 337, 599
HaeIII GGCC 3 cut(s) 110, 661, 680
HapII CCGG 2 cut(s) 106, 111
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 6 cut(s) 80, 144, 238, 326, 518, 611
HinfI GANTC 1 cut(s) 131
HpaII CCGG 2 cut(s) 106, 111
Hpy166II GTNNAC 4 cut(s) 62, 347, 449, 653
Hpy188I TCNGA 2 cut(s) 502, 523
Hpy188III TCNNGA 3 cut(s) 311, 442, 641
Hpy8I GTNNAC 4 cut(s) 62, 347, 449, 653
Hpy99I CGWCG 1 cut(s) 456
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 7 cut(s) 4, 76, 86, 176, 182, 607, 636
HpyF10VI GCNNNNNNNGC 1 cut(s) 604
HpyF3I CTNAG 2 cut(s) 49, 312
HpySE526I ACGT 1 cut(s) 454
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 6 cut(s) 80, 144, 238, 326, 518, 611
KpnI GGTACC 1 cut(s) 361
Kzo9I GATC 2 cut(s) 547, 669
Lsp1109I GCAGC 6 cut(s) 29, 32, 98, 181, 348, 610
MaeI CTAG 2 cut(s) 150, 617
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 184, 298, 386
MalI GATC 2 cut(s) 549, 671
MboI GATC 2 cut(s) 547, 669
MboII GAAGA 2 cut(s) 494, 590
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 14
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 4 cut(s) 275, 291, 485, 696
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 7 cut(s) 107, 146, 242, 318, 372, 556, 637
Mox20I TGGCCA 1 cut(s) 680
MscI TGGCCA 1 cut(s) 680
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 4 cut(s) 21, 81, 327, 631
Msp20I TGGCCA 1 cut(s) 680
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 2 cut(s) 106, 111
MspR9I CCNGG 2 cut(s) 107, 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 604
NciI CCSGG 1 cut(s) 107
NcoI CCATGG 1 cut(s) 140
NdeII GATC 2 cut(s) 547, 669
NlaIII CATG 6 cut(s) 80, 144, 238, 326, 518, 611
NlaIV GGNNCC 2 cut(s) 359, 549
NspI RCATGY 2 cut(s) 326, 518
NspV TTCGAA 1 cut(s) 164
PciI ACATGT 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 453
PkrI GCNGC 6 cut(s) 44, 47, 88, 171, 338, 600
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PscI ACATGT 1 cut(s) 322
PsiI TTATAA 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 359, 549
PspPI GGNCC 2 cut(s) 108, 256
PsuI RGATCY 1 cut(s) 547
PsyI GACNNNGTC 1 cut(s) 453
RsaI GTAC 3 cut(s) 63, 359, 693
RsaNI GTAC 3 cut(s) 62, 358, 692
RseI CAYNNNNRTG 4 cut(s) 21, 81, 327, 631
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 6 cut(s) 43, 46, 87, 170, 337, 599
Sau3AI GATC 2 cut(s) 547, 669
Sau96I GGNCC 2 cut(s) 108, 256
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 107, 260
SduI GDGCHC 1 cut(s) 14
SetI ASST 7 cut(s) 70, 118, 174, 234, 363, 383, 457
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 4 cut(s) 21, 81, 327, 631
SmlI CTYRAG 3 cut(s) 442, 560, 639
SmoI CTYRAG 3 cut(s) 442, 560, 639
Sse9I AATT 4 cut(s) 275, 291, 485, 696
SsiI CCGC 1 cut(s) 339
SspMI CTAG 2 cut(s) 150, 617
StyD4I CCNGG 2 cut(s) 105, 258
StyI CCWWGG 2 cut(s) 140, 656
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 1 cut(s) 457
TaqI TCGA 2 cut(s) 164, 672
TasI AATT 4 cut(s) 275, 291, 485, 696
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 627
TseI GCWGC 6 cut(s) 42, 45, 86, 169, 336, 598
TspDTI ATGAA 4 cut(s) 93, 212, 345, 452
TspGWI ACGGA 2 cut(s) 47, 286
TspRI CASTG 1 cut(s) 627
Tth111I GACNNNGTC 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 485
XceI RCATGY 2 cut(s) 326, 518
XspI CTAG 2 cut(s) 150, 617
ZraI GACGTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.