Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

12527076 .. 12527494

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCAATCGCATGTTGTAGATGAGCCAAAAGGGACATATGGGTACCTTGACCCTGCCTACATGAGGTCTGGTTACATTTCAGAAAAGACTGATATTTATAGCTTCGGTGTGCTTTTACTTATATTGTTGACAGGCCAAAAAGTTGTGCTTCAATATCAAGAAGAATTTGAGTCGATTATTTCATATGTGAAACGTCATGCTAGTGATGGTCAGATTCAGACGGTAGTAGATCCTAAAATCCTTGGACAGATGGGGGAAGATAAGCAAGCTCAAGAGCAGTTGCATTTATTCCTAGCACTGGCATTGTCATGTACCCAAGATGAAAGTGAAGCAAGGCCAGATATGATTGATGTGGCTAAAGAACTGATACTTATTGAGAAGTCTGTCCTGCTTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.92

Weight (kDa)

4.76

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 66	3.9e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	2 cut(s)	44, 313
AfiI	CCNNNNNNNGG	2 cut(s)	63, 298
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	2 cut(s)	102, 269
AluI	AGCT	2 cut(s)	102, 269
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	2 cut(s)	133, 335
ApoI	RAATTY	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	42
BccI	CCATC	2 cut(s)	200, 244
BfaI	CTAG	3 cut(s)	201, 293, 397
BmiI	GGNNCC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 298
Bse1I	ACTGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	63, 298
BseNI	ACTGG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	135, 337
BshNI	GGYRCC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	63, 298
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	135, 337
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	135, 337
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	267
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	135, 337
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	43, 312
CviAII	CATG	4 cut(s)	11, 61, 197, 309
CviJI	RGCY	6 cut(s)	25, 102, 135, 269, 337, 356
CviKI_1	RGCY	6 cut(s)	25, 102, 135, 269, 337, 356
CviQI	GTAC	2 cut(s)	43, 312
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	14, 64, 200, 312
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	10, 60, 196, 308
FauNDI	CATATG	2 cut(s)	37, 184
FspBI	CTAG	3 cut(s)	201, 293, 397
HaeIII	GGCC	2 cut(s)	135, 337
Hin1II	CATG	4 cut(s)	14, 64, 200, 312
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	170, 214
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	82, 213, 219
Hpy188III	TCNNGA	2 cut(s)	158, 272
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	4, 283
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	4 cut(s)	14, 64, 200, 312
KpnI	GGTACC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	5 cut(s)	54, 66, 117, 284, 351
MaeI	CTAG	3 cut(s)	201, 293, 397
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	173, 269
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	1 cut(s)	57
MslI	CAYNNNNRTG	2 cut(s)	201, 307
NdeI	CATATG	2 cut(s)	37, 184
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	14, 64, 200, 312
NlaIV	GGNNCC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	2 cut(s)	44, 313
RsaNI	GTAC	2 cut(s)	43, 312
RseI	CAYNNNNRTG	2 cut(s)	201, 307
Sau3AI	GATC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	179
SetI	ASST	5 cut(s)	48, 68, 104, 196, 271
SmiMI	CAYNNNNRTG	2 cut(s)	201, 307
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	164
SspMI	CTAG	3 cut(s)	201, 293, 397
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	214
TscAI	CASTG	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	171, 336
TspRI	CASTG	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	3 cut(s)	201, 293, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.