Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

7124141 .. 7132990

Gene Structure 8850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG044900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATCGATGTGGCCAAACAACTTAGGTTTTCTAGACAACCGATTAAGAAGAGAGAGGGGAGGGATGGGCTCTGTAGGAATTTCAAGAGGGCGAGGGAGGAGGCTATTCGTGATATTATAATTTCAATGCAGATGAGCACTCAAAAGAATGTATTGAAATTGTTGGGCTGCTGTTTAGAGTTCCCTATACCAGCTCTGGTGCATGAGTATGCAACGCAAGGCTGTGTTCTTAACGACAAAGGAAGTTTCCGGTCTAATGAATCTCTACCATGGAAAACTAGACTACGTATTGCAAAGCAGCCGGCTAGTGCAATTACATATCTACATACAGCCTTTCCAAGACCTATCATTCACAGGCATCTGAGGCCCCATTGTATTTTCTTGGATGATGACTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACCATTCCTTCTGAGAAATCCCATGTTCAAGATGTTGTGATAAAAGGGACAATGTGGTACCTTAGCCCTGAGTTTCTTGATTCTGGTTACATTTCAGAAAAATTTGATGTTTATAGCTTTGGTGTGATTTTACTTGGCTTCTTGGTGGAACAGAAACTTTTGGCAGGACATGACGACCTTATAAAATCGGTGAAATTGCATGCTTGTGATGGCCAGATTCAAACAATTGTCGATCCTAAAATACTCGATGAGTTAGGGGGAGGTAATGAGCCAACACAACTTCAGTTGCATGATTTCCTAGCACTAGCATGGTTATGCACTCGAGATGAAAGTGAACTGAGGCCAGATATGATTGATGTGGCCAAAGAACTCATGCGAATTGAGAAGTCTATCTGGCCCCCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

278

Amino Acids

31.82

Weight (kDa)

7.09

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	32 - 206	1.6e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	32 - 188	1.2e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	119, 611
Acc65I	GGTACC	1 cut(s)	486
AccB1I	GGYRCC	1 cut(s)	486
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	3 cut(s)	12, 640, 789
AcsI	RAATTY	2 cut(s)	79, 530
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	85, 126, 157, 458, 650
AluBI	AGCT	2 cut(s)	194, 546
AluI	AGCT	2 cut(s)	194, 546
Alw21I	GWGCWC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	656
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	6 cut(s)	12, 365, 640, 770, 789, 824
ApeKI	GCWGC	2 cut(s)	168, 298
ApoI	RAATTY	2 cut(s)	79, 530
Asp718I	GGTACC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	366, 825
AsuHPI	GGTGA	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	750
BalI	TGGCCA	3 cut(s)	14, 642, 791
BanI	GGYRCC	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	155, 310
BccI	CCATC	2 cut(s)	59, 632
BfaI	CTAG	6 cut(s)	33, 279, 306, 728, 734, 835
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	2 cut(s)	169, 299
BlsI	GCNGC	2 cut(s)	170, 300
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	366, 825
BmiI	GGNNCC	3 cut(s)	368, 488, 827
BmsI	GCATC	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	491
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	301
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	70, 391
BseMII	CTCAG	4 cut(s)	353, 432, 489, 758
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	155, 310
BshFI	GGCC	6 cut(s)	14, 367, 642, 772, 791, 826
BshNI	GGYRCC	1 cut(s)	486
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	2 cut(s)	250, 302
BslFI	GGGAC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	6 cut(s)	14, 367, 642, 772, 791, 826
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	72, 140
Bsp143I	GATC	2 cut(s)	3, 661
Bsp19I	CCATGG	1 cut(s)	269
BspANI	GGCC	6 cut(s)	14, 367, 642, 772, 791, 826
BspCNI	CTCAG	4 cut(s)	354, 433, 490, 759
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	368, 488, 827
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	3, 661
BssT1I	CCWWGG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	303, 630
BstDEI	CTNAG	6 cut(s)	23, 362, 441, 491, 498, 767
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	70, 391
BstKTI	GATC	2 cut(s)	6, 664
BstMBI	GATC	2 cut(s)	3, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	73
BstSNI	TACGTA	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	155, 310
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	6 cut(s)	14, 367, 642, 772, 791, 826
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	70, 391
Cac8I	GCNNGC	2 cut(s)	303, 630
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	366, 825
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	8 cut(s)	203, 270, 452, 599, 629, 719, 738, 802
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	6 cut(s)	23, 362, 441, 491, 498, 767
DpnI	GATC	2 cut(s)	5, 663
DpnII	GATC	2 cut(s)	3, 661
EaeI	YGGCCR	3 cut(s)	12, 640, 789
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco105I	TACGTA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	8 cut(s)	206, 273, 455, 602, 632, 722, 741, 805
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	8 cut(s)	202, 269, 451, 598, 628, 718, 737, 801
Fnu4HI	GCNGC	2 cut(s)	169, 299
FokI	GGATG	2 cut(s)	77, 398
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	169, 299
FspBI	CTAG	6 cut(s)	33, 279, 306, 728, 734, 835
GluI	GCNGC	2 cut(s)	169, 299
HaeIII	GGCC	6 cut(s)	14, 367, 642, 772, 791, 826
HapII	CCGG	2 cut(s)	250, 302
Hin1II	CATG	8 cut(s)	206, 273, 455, 602, 632, 722, 741, 805
HinfI	GANTC	3 cut(s)	260, 509, 646
HpaII	CCGG	2 cut(s)	250, 302
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	3 cut(s)	363, 442, 526
Hpy188III	TCNNGA	6 cut(s)	33, 85, 110, 458, 506, 752
Hpy8I	GTNNAC	1 cut(s)	764
HpyAV	CCTTC	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	8 cut(s)	130, 202, 212, 293, 311, 628, 718, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	6 cut(s)	23, 362, 441, 491, 498, 767
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	8 cut(s)	206, 273, 455, 602, 632, 722, 741, 805
KpnI	GGTACC	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	3, 661
Lsp1109I	GCAGC	2 cut(s)	155, 310
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	6 cut(s)	33, 279, 306, 728, 734, 835
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	410, 515
MalI	GATC	2 cut(s)	5, 663
MboI	GATC	2 cut(s)	3, 661
MboII	GAAGA	1 cut(s)	61
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	72, 140
MlsI	TGGCCA	3 cut(s)	14, 642, 791
MluCI	AATT	9 cut(s)	79, 120, 158, 312, 404, 530, 623, 654, 807
MluNI	TGGCCA	3 cut(s)	14, 642, 791
MnlI	CCTC	9 cut(s)	49, 54, 81, 87, 91, 94, 357, 683, 762
Mox20I	TGGCCA	3 cut(s)	14, 642, 791
MroNI	GCCGGC	1 cut(s)	301
MscI	TGGCCA	3 cut(s)	14, 642, 791
MseI	TTAA	2 cut(s)	45, 231
MslI	CAYNNNNRTG	4 cut(s)	207, 633, 736, 742
Msp20I	TGGCCA	3 cut(s)	14, 642, 791
MspI	CCGG	2 cut(s)	250, 302
MunI	CAATTG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	364
NaeI	GCCGGC	1 cut(s)	303
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	3, 661
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	8 cut(s)	206, 273, 455, 602, 632, 722, 741, 805
NlaIV	GGNNCC	3 cut(s)	368, 488, 827
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	632
PaeI	GCATGC	1 cut(s)	632
PaeR7I	CTCGAG	1 cut(s)	750
PdiI	GCCGGC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	260, 509, 646
PkrI	GCNGC	2 cut(s)	170, 300
Ppu21I	YACGTR	1 cut(s)	287
PsiI	TTATAA	2 cut(s)	119, 611
PspN4I	GGNNCC	3 cut(s)	368, 488, 827
PspPI	GGNCC	2 cut(s)	366, 825
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	4 cut(s)	207, 633, 736, 742
SaqAI	TTAA	2 cut(s)	45, 231
SatI	GCNGC	2 cut(s)	169, 299
Sau3AI	GATC	2 cut(s)	3, 661
Sau96I	GGNCC	2 cut(s)	366, 825
SduI	GDGCHC	2 cut(s)	72, 140
SetI	ASST	8 cut(s)	29, 196, 289, 346, 492, 548, 609, 694
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	750
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	4 cut(s)	207, 633, 736, 742
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
SnaBI	TACGTA	1 cut(s)	287
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	9 cut(s)	79, 120, 158, 312, 404, 530, 623, 654, 807
SspMI	CTAG	6 cut(s)	33, 279, 306, 728, 734, 835
StyI	CCWWGG	1 cut(s)	269
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	4 cut(s)	6, 660, 675, 751
TasI	AATT	9 cut(s)	79, 120, 158, 312, 404, 530, 623, 654, 807
TfiI	GAWTC	3 cut(s)	260, 509, 646
Tru1I	TTAA	2 cut(s)	45, 231
Tru9I	TTAA	2 cut(s)	45, 231
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	168, 298
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	273, 771
XapI	RAATTY	2 cut(s)	79, 530
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	632
XhoI	CTCGAG	1 cut(s)	750
XspI	CTAG	6 cut(s)	33, 279, 306, 728, 734, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.