Rroxscaffold_7G00213220

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
63671746 .. 63673835
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213220.1

Sequence Viewer

Length: 1047 bp
ATGCTATCTAAACTCTTGTACTCTTTGCTTCCATGTTTGAGAAAGGAGGGAGAAGATGCTGATAGATCATTCTTTGATAATGGAAGCAAATTATTAGAGGATCTGATTGCCTCTTGTGATGGAAAATCTAATCCCATTCGCCATTACTCTGCTGATGAACTTGTCAGGGCAACTAACAACTTCCATCCTTCTTGTCGTATATCTGGTGGATACGGTTTATATAAGGGTTTTCTAGACAACCGATTGGTTATGATTAATCGGCTGGAAATTTCAACTTTTAATAGGCGGTTTAGAGATGAGGCTATTCGTGACATTATAATATCAACACAGATGAGCGCTCATAAGAATGTTTTGAAACTGTTGGGCTGTTGCTTAGAGTTCCGTGTACCGGCTCTGGTGCACGAATATGCAGCGAAAGGAGTTCTCAACTCTGAAGGAGGTTATGGGGATAATGAGTCCCTCCCATGGAAAACTAGACTACGTATTGCGAAGCAGCTTGCAAATGCAATTACATATCTCCATACAGCCTTCCCCAGACCCATCATTCATAGAGACATCAAGCCCACACATATTCTTTTGGACCATGACTTTGCCCCCAAAATCTTTGACTTCTCAATTTCCATAACCATTCCTCCTGATCAATCGCATGTCGAAGATGCTGTGATTGGGACAATTGGGTACGTTGACCCTGCGTACTACAATTCTAGTTACATTACAGAAAAATCTGATGTTTATAGCTTTGGTGTCATGTTACTTGTTTTCTTGAGTGGACTAGTGGCTTATGGACTACAAGAGGAGCAGTTGCATATCGAGTCCATTGTGTCATATGTGAAAGTACGTGCTTCTGATGACCAGTTCCATACGATTGTGGATCCTAAAATACTTGAGGAGTTAAAAGGGGAAGATGAGCAAGCACAACAGCAGCAGTTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCGAGAGGAACCTGAACGAAGGCCAGATATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAAGTCTATCAATCCTTGTTAG

Protein Analysis

348

Amino Acids

39.49

Weight (kDa)

5.67

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 79 - 331 7.8e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 98 - 338 5.4e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AciI CCGC 1 cut(s) 286
AclWI GGATC 3 cut(s) 108, 866, 879
AcoI YGGCCR 1 cut(s) 1002
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 6 cut(s) 20, 387, 680, 695, 837, 1017
AfeI AGCGCT 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 388, 465, 946
AgsI TTSAA 2 cut(s) 273, 355
AhlI ACTAGT 1 cut(s) 772
AluBI AGCT 2 cut(s) 496, 738
AluI AGCT 2 cut(s) 496, 738
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 546
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 3 cut(s) 108, 866, 879
Ama87I CYCGRG 1 cut(s) 963
Aor51HI AGCGCT 1 cut(s) 337
AoxI GGCC 2 cut(s) 983, 1002
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 3 cut(s) 410, 493, 922
ApoI RAATTY 1 cut(s) 267
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AseI ATTAAT 1 cut(s) 255
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 963
AvaII GGWCC 1 cut(s) 580
BaeGI GKGCMC 1 cut(s) 402
BalI TGGCCA 1 cut(s) 1004
BamHI GGATCC 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 422, 505, 934
BccI CCATC 3 cut(s) 113, 192, 548
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 546
BcuI ACTAGT 1 cut(s) 772
BfaI CTAG 5 cut(s) 233, 474, 705, 773, 941
BfoI RGCGCY 1 cut(s) 339
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 3 cut(s) 411, 494, 923
BlsI GCNGC 3 cut(s) 412, 495, 924
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 2 cut(s) 873, 972
BmsI GCATC 2 cut(s) 46, 646
BpuEI CTTGAG 2 cut(s) 784, 905
Bsa29I ATCGAT 1 cut(s) 996
BsaAI YACGTR 2 cut(s) 482, 839
BsaJI CCNNGG 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 465, 946
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 2 cut(s) 853, 951
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 3 cut(s) 388, 465, 946
BseNI ACTGG 2 cut(s) 853, 951
BseRI GAGGAG 2 cut(s) 809, 902
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 3 cut(s) 422, 505, 934
BshFI GGCC 2 cut(s) 985, 1004
BshVI ATCGAT 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 963
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 2 cut(s) 442, 682
BslI CCNNNNNNNGG 3 cut(s) 388, 465, 946
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 2 cut(s) 442, 682
BsnI GGCC 2 cut(s) 985, 1004
BsoBI CYCGRG 1 cut(s) 963
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 5 cut(s) 65, 100, 637, 871, 993
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 1 cut(s) 286
BspANI GGCC 2 cut(s) 985, 1004
BspDI ATCGAT 1 cut(s) 996
BspLI GGNNCC 2 cut(s) 873, 972
BspPI GGATC 3 cut(s) 108, 866, 879
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 2 cut(s) 853, 951
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 5 cut(s) 65, 100, 637, 871, 993
BssT1I CCWWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 215, 360
BstAPI GCANNNNNTGC 1 cut(s) 928
BstBAI YACGTR 2 cut(s) 482, 839
BstC8I GCNNGC 2 cut(s) 498, 912
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 5 cut(s) 68, 103, 640, 874, 996
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 5 cut(s) 65, 100, 637, 871, 993
BstMWI GCNNNNNNNGC 1 cut(s) 928
BstNSI RCATGY 1 cut(s) 650
BstSLI GKGCMC 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 482
BstV1I GCAGC 3 cut(s) 422, 505, 934
BstX2I RGATCY 2 cut(s) 100, 871
BstYI RGATCY 2 cut(s) 100, 871
Bsu15I ATCGAT 1 cut(s) 996
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 2 cut(s) 985, 1004
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 944
Cac8I GCNNGC 2 cut(s) 498, 912
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 580
ClaI ATCGAT 1 cut(s) 996
Csp6I GTAC 6 cut(s) 19, 386, 679, 694, 836, 1016
CviAII CATG 6 cut(s) 33, 465, 584, 647, 748, 932
CviQI GTAC 6 cut(s) 19, 386, 679, 694, 836, 1016
DdeI CTNAG 1 cut(s) 373
DpnI GATC 5 cut(s) 67, 102, 639, 873, 995
DpnII GATC 5 cut(s) 65, 100, 637, 871, 993
EaeI YGGCCR 1 cut(s) 1002
Eco105I TACGTA 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 580
Eco47III AGCGCT 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 963
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 6 cut(s) 36, 468, 587, 650, 751, 935
FaqI GGGAC 2 cut(s) 442, 682
FatI CATG 6 cut(s) 32, 464, 583, 646, 747, 931
FauNDI CATATG 1 cut(s) 826
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 3 cut(s) 411, 494, 923
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 3 cut(s) 411, 494, 923
FspBI CTAG 5 cut(s) 233, 474, 705, 773, 941
GlaI GCGC 1 cut(s) 337
GluI GCNGC 3 cut(s) 411, 494, 923
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 2 cut(s) 985, 1004
HapII CCGG 1 cut(s) 389
HhaI GCGC 1 cut(s) 338
Hin1II CATG 6 cut(s) 36, 468, 587, 650, 751, 935
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HinfI GANTC 2 cut(s) 455, 812
HpaII CCGG 1 cut(s) 389
Hpy166II GTNNAC 4 cut(s) 386, 400, 685, 770
Hpy188I TCNGA 4 cut(s) 105, 433, 727, 847
Hpy188III TCNNGA 5 cut(s) 233, 308, 635, 763, 965
Hpy8I GTNNAC 4 cut(s) 386, 400, 685, 770
HpyAV CCTTC 4 cut(s) 198, 428, 538, 975
HpyCH4III ACNGT 2 cut(s) 215, 360
HpyCH4IV ACGT 3 cut(s) 481, 681, 838
HpyCH4V TGCA 7 cut(s) 400, 410, 500, 506, 805, 931, 960
HpyF10VI GCNNNNNNNGC 1 cut(s) 928
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 3 cut(s) 481, 681, 838
Hsp92II CATG 6 cut(s) 36, 468, 587, 650, 751, 935
HspAI GCGC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 5 cut(s) 65, 100, 637, 871, 993
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 3 cut(s) 422, 505, 934
LweI GCATC 2 cut(s) 46, 646
MaeI CTAG 5 cut(s) 233, 474, 705, 773, 941
MaeII ACGT 3 cut(s) 481, 681, 838
MaeIII GTNAC 3 cut(s) 308, 707, 750
MalI GATC 5 cut(s) 67, 102, 639, 873, 995
MboI GATC 5 cut(s) 65, 100, 637, 871, 993
MboII GAAGA 3 cut(s) 65, 665, 914
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 2 cut(s) 100, 871
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 7 cut(s) 89, 267, 507, 615, 672, 700, 1020
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 2 cut(s) 464, 821
Mox20I TGGCCA 1 cut(s) 1004
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 3 cut(s) 255, 279, 893
MslI CAYNNNNRTG 3 cut(s) 345, 405, 955
Msp20I TGGCCA 1 cut(s) 1004
MspI CCGG 1 cut(s) 389
MunI CAATTG 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 928
NcoI CCATGG 1 cut(s) 464
NdeI CATATG 1 cut(s) 826
NdeII GATC 5 cut(s) 65, 100, 637, 871, 993
NlaIII CATG 6 cut(s) 36, 468, 587, 650, 751, 935
NlaIV GGNNCC 2 cut(s) 873, 972
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 650
PaeR7I CTCGAG 1 cut(s) 963
PkrI GCNGC 3 cut(s) 412, 495, 924
PleI GAGTC 2 cut(s) 463, 820
PpsI GAGTC 2 cut(s) 463, 820
Ppu21I YACGTR 2 cut(s) 482, 839
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 873, 972
PspPI GGNCC 1 cut(s) 580
PsuI RGATCY 2 cut(s) 100, 871
RsaI GTAC 6 cut(s) 20, 387, 680, 695, 837, 1017
RsaNI GTAC 6 cut(s) 19, 386, 679, 694, 836, 1016
RseI CAYNNNNRTG 3 cut(s) 345, 405, 955
SaqAI TTAA 3 cut(s) 255, 279, 893
SatI GCNGC 3 cut(s) 411, 494, 923
Sau3AI GATC 5 cut(s) 65, 100, 637, 871, 993
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 2 cut(s) 464, 821
SduI GDGCHC 1 cut(s) 402
SetI ASST 7 cut(s) 442, 484, 498, 684, 740, 841, 976
SfaNI GCATC 2 cut(s) 46, 646
Sfr274I CTCGAG 1 cut(s) 963
SinI GGWCC 1 cut(s) 580
SlaI CTCGAG 1 cut(s) 963
SmiMI CAYNNNNRTG 3 cut(s) 345, 405, 955
SmlI CTYRAG 3 cut(s) 763, 884, 963
SmoI CTYRAG 3 cut(s) 763, 884, 963
SnaBI TACGTA 1 cut(s) 482
SpeI ACTAGT 1 cut(s) 772
Sse9I AATT 7 cut(s) 89, 267, 507, 615, 672, 700, 1020
SsiI CCGC 1 cut(s) 286
SspMI CTAG 5 cut(s) 233, 474, 705, 773, 941
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 215, 360
TaiI ACGT 3 cut(s) 484, 684, 841
TaqI TCGA 4 cut(s) 651, 810, 964, 996
TasI AATT 7 cut(s) 89, 267, 507, 615, 672, 700, 1020
TatI WGTACW 1 cut(s) 18
Tru1I TTAA 3 cut(s) 255, 279, 893
Tru9I TTAA 3 cut(s) 255, 279, 893
TscAI CASTG 1 cut(s) 951
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 410, 493, 922
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 171, 536
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 951
VneI GTGCAC 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 580
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 1 cut(s) 267
XbaI TCTAGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 650
XhoI CTCGAG 1 cut(s) 963
XspI CTAG 5 cut(s) 233, 474, 705, 773, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.