RchiOBHm_Chr6g0248521

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
4531182 .. 4533060
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22275

Sequence Viewer

Length: 1020 bp
ATGCCATCCAATGTCTTGTACTCTTTGCTTCCATGTTTGAAAAAGGAGGGAAAATATGCTAATAGCTCATTCTTGGATAATGGAAGCAAATTATTAGAGGATCTCATTGCTTCTTGTGATGGCAAATCCAATCCAATACGCCATTTCTCTGCTGATGAACTCATCAGGGCAACCAATAACTTCCATCCGTCTTGCCTTATACAAGAGTGTCGTCCACATGCATTTAGGGGTTCTCTGGACAACCGATTGGTTATCATTAAGACCATGGAGGCAGCAGATGAAGCTAGGGACGAAGCTATTCGTAACATCGTAATTTCAGTGCAGATGAGCACTCATAAGAATGTTTTGAAATTGTTGGGCTGCTGCTTAGAGTTCCCATTACCAGTTTTGGTGCATGAATATGCAACACTAGGAGTTCTTAACAAGAAAGGAGGTTTGGGGGATGATGAAGCTCTGCCATGGAAAACTAGAATACGAATCGCAAAGCAGGTTTCTAGTGCTATTACTTATCTCCATGCAGCCTTCCCTAGACCCATCATTCATAGGGATCTAAGGCCTGATTGTATTCTCTTGGATGAGGACTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACGATTCCTCCTAAGCAATCACATGTCAAAGATATCGTGAAAGGCACAGTAGGGTATCTCGACCCTGTGTATGTCAAGTCTGCATACATTTCAGAAAAAACTGATGTTTATAGCTTTGGTGTCATTTTACTTGTTTTCTTGACGGGACGAAAACCCTTCAAAGAAAATCAGAGAGGATATTTTGAATATGAGGACTTCATTCCATATTTGAAGTTACAATTAGCATGTGAGGGCCAAATTCAGACAATTGTGGATCCTAAAATCCTTGAGGAGTTGGGGGAAGGTGATGAGCAAGCACAACAGCAGTTGCATGATTTCTTATCACTGGCATTGTCATGTACCCAACTAGAAAGTGTGGCAAAAGAACTCGTACGAATTGAGAAATCTATCTTGCCATCCTAG

Protein Analysis

339

Amino Acids

38.12

Weight (kDa)

6.02

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 80 - 271 9.3e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 80 - 262 2.2e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AclWI GGATC 4 cut(s) 108, 555, 866, 879
AcsI RAATTY 1 cut(s) 855
AfaI GTAC 3 cut(s) 20, 958, 990
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 5 cut(s) 40, 349, 778, 803, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 5 cut(s) 66, 284, 296, 452, 732
AluI AGCT 5 cut(s) 66, 284, 296, 452, 732
Alw21I GWGCWC 1 cut(s) 332
AlwI GGATC 4 cut(s) 108, 555, 866, 879
AoxI GGCC 2 cut(s) 554, 850
ApeKI GCWGC 4 cut(s) 272, 360, 363, 518
ApoI RAATTY 1 cut(s) 855
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 850
AsuHPI GGTGA 1 cut(s) 914
BamHI GGATCC 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 4 cut(s) 284, 347, 350, 530
BccI CCATC 4 cut(s) 13, 113, 192, 542
BfaI CTAG 7 cut(s) 285, 410, 468, 495, 528, 965, 1018
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 4 cut(s) 273, 361, 364, 519
BlsI GCNGC 4 cut(s) 274, 362, 365, 520
BmgT120I GGNCC 1 cut(s) 850
BmiI GGNNCC 1 cut(s) 873
Bpu10I CCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 905
BsaJI CCNNGG 2 cut(s) 264, 458
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bse1I ACTGG 2 cut(s) 383, 948
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 264, 458
BseGI GGATG 5 cut(s) 5, 184, 448, 580, 1013
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 383, 948
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 4 cut(s) 284, 347, 350, 530
BsgI GTGCAG 1 cut(s) 341
BshFI GGCC 2 cut(s) 556, 852
BsiHKAI GWGCWC 1 cut(s) 332
BsiWI CGTACG 1 cut(s) 988
BslFI GGGAC 2 cut(s) 302, 777
BsmFI GGGAC 2 cut(s) 302, 777
BsnI GGCC 2 cut(s) 556, 852
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 3 cut(s) 100, 547, 871
Bsp19I CCATGG 2 cut(s) 264, 458
BspANI GGCC 2 cut(s) 556, 852
BspLI GGNNCC 1 cut(s) 873
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 4 cut(s) 108, 555, 866, 879
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 2 cut(s) 383, 948
BssECI CCNNGG 2 cut(s) 264, 458
BssMI GATC 3 cut(s) 100, 547, 871
BssT1I CCWWGG 2 cut(s) 264, 458
Bst4CI ACNGT 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 912
BstDEI CTNAG 3 cut(s) 367, 551, 630
BstDSI CCRYGG 2 cut(s) 264, 458
BstF5I GGATG 5 cut(s) 5, 184, 448, 580, 1013
BstKTI GATC 3 cut(s) 103, 550, 874
BstMBI GATC 3 cut(s) 100, 547, 871
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 3 cut(s) 221, 644, 846
BstV1I GCAGC 4 cut(s) 284, 347, 350, 530
BstX2I RGATCY 3 cut(s) 100, 547, 871
BstYI RGATCY 3 cut(s) 100, 547, 871
BsuRI GGCC 2 cut(s) 556, 852
BtgI CCRYGG 2 cut(s) 264, 458
BtsCI GGATG 5 cut(s) 5, 184, 448, 580, 1013
BtsIMutI CAGTG 2 cut(s) 324, 941
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 912
Cfr13I GGNCC 1 cut(s) 850
Csp6I GTAC 3 cut(s) 19, 957, 989
CviJI RGCY 9 cut(s) 66, 284, 296, 360, 452, 521, 556, 732, 852
CviKI_1 RGCY 9 cut(s) 66, 284, 296, 360, 452, 521, 556, 732, 852
CviQI GTAC 3 cut(s) 19, 957, 989
DdeI CTNAG 3 cut(s) 367, 551, 630
DpnI GATC 3 cut(s) 102, 549, 873
DpnII GATC 3 cut(s) 100, 547, 871
Eco130I CCWWGG 2 cut(s) 264, 458
Eco147I AGGCCT 1 cut(s) 556
Eco32I GATATC 1 cut(s) 652
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 264, 458
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 264, 458
FaqI GGGAC 2 cut(s) 302, 777
Fnu4HI GCNGC 4 cut(s) 273, 361, 364, 519
FokI GGATG 4 cut(s) 171, 455, 587, 1000
Fsp4HI GCNGC 4 cut(s) 273, 361, 364, 519
FspBI CTAG 7 cut(s) 285, 410, 468, 495, 528, 965, 1018
GluI GCNGC 4 cut(s) 273, 361, 364, 519
HaeIII GGCC 2 cut(s) 556, 852
HinfI GANTC 2 cut(s) 477, 622
HphI GGTGA 1 cut(s) 914
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 712, 789, 861
Hpy188III TCNNGA 4 cut(s) 236, 655, 677, 757
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 532, 784, 893
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4V TGCA 7 cut(s) 221, 322, 394, 404, 518, 701, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 367, 551, 630
Kzo9I GATC 3 cut(s) 100, 547, 871
LpnPI CCDG 7 cut(s) 151, 221, 396, 473, 570, 696, 929
Lsp1109I GCAGC 4 cut(s) 284, 347, 350, 530
MaeI CTAG 7 cut(s) 285, 410, 468, 495, 528, 965, 1018
MaeIII GTNAC 3 cut(s) 302, 599, 831
MalI GATC 3 cut(s) 102, 549, 873
MboI GATC 3 cut(s) 100, 547, 871
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 3 cut(s) 100, 547, 871
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 8 cut(s) 89, 312, 350, 593, 836, 855, 864, 993
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 258, 420
MslI CAYNNNNRTG 3 cut(s) 339, 399, 952
MunI CAATTG 1 cut(s) 864
MwoI GCNNNNNNNGC 1 cut(s) 281
NcoI CCATGG 2 cut(s) 264, 458
NdeII GATC 3 cut(s) 100, 547, 871
NlaIV GGNNCC 1 cut(s) 873
NmuCI GTSAC 1 cut(s) 599
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 3 cut(s) 221, 644, 846
PceI AGGCCT 1 cut(s) 556
PciI ACATGT 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 477, 622
Pfl23II CGTACG 1 cut(s) 988
PkrI GCNGC 4 cut(s) 274, 362, 365, 520
PscI ACATGT 1 cut(s) 640
PspLI CGTACG 1 cut(s) 988
PspN4I GGNNCC 1 cut(s) 873
PspPI GGNCC 1 cut(s) 850
PsuI RGATCY 3 cut(s) 100, 547, 871
RsaI GTAC 3 cut(s) 20, 958, 990
RsaNI GTAC 3 cut(s) 19, 957, 989
RseI CAYNNNNRTG 3 cut(s) 339, 399, 952
SaqAI TTAA 2 cut(s) 258, 420
SatI GCNGC 4 cut(s) 273, 361, 364, 519
Sau3AI GATC 3 cut(s) 100, 547, 871
Sau96I GGNCC 1 cut(s) 850
SduI GDGCHC 1 cut(s) 332
SetI ASST 8 cut(s) 68, 286, 298, 436, 454, 492, 734, 904
SmiMI CAYNNNNRTG 3 cut(s) 339, 399, 952
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
Sse9I AATT 8 cut(s) 89, 312, 350, 593, 836, 855, 864, 993
SseBI AGGCCT 1 cut(s) 556
SspMI CTAG 7 cut(s) 285, 410, 468, 495, 528, 965, 1018
StuI AGGCCT 1 cut(s) 556
StyI CCWWGG 2 cut(s) 264, 458
TaaI ACNGT 1 cut(s) 667
TaqI TCGA 1 cut(s) 678
TasI AATT 8 cut(s) 89, 312, 350, 593, 836, 855, 864, 993
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 2 cut(s) 477, 622
Tru1I TTAA 2 cut(s) 258, 420
Tru9I TTAA 2 cut(s) 258, 420
TscAI CASTG 2 cut(s) 324, 948
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 4 cut(s) 272, 360, 363, 518
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 6 cut(s) 171, 294, 411, 462, 530, 805
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 324, 948
XapI RAATTY 1 cut(s) 855
XceI RCATGY 3 cut(s) 221, 644, 846
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 7 cut(s) 285, 410, 468, 495, 528, 965, 1018
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.