Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

7626023 .. 7628068

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAATGTGTTTTCATTCTCTGCCACTCAGCACGTGTTTATGTTTTACCTATGTTGCATCACCAGGTTTTCGTTGCTTGCGTGTTTGAGAAAGGAGGAACCAGATACTGATGGATCCTCATTCTTGATAAATGGAAGCAAAGTACTAGAGGATCTCATTGTTTCTTTTGATGGCAAATCTAATCCTATTCGCAATTACTCTGCTGATGAGCTCATCAAGGCAACCAACAACTTTGATGCTTCTTGCATTATGCAAGAATGTAGGATCTACAAAATGTTCAGTAGTGTTCTAGACGATCGATCTATTATCATTAAGAAGTACTTCACGTTGAGCTGGCTCAATGAGGATGCAGTTAGATCTCTAGCTATTCGTGACATTATCATTTCAACACAGATGAGCAGTGCTCTAGTGCATGAATATGCAACAATAGGAGTGCCAAATGATGAAGGAGGTTTCGGAGCTAGTGAATCCTTAACCTGGAAAGCTAGACTAGGTATAGCGAAGCAGCTTGCAAATGCTCTTTCATATCTCCATACTGCCTTTCCTAGGCCAATCATTCTCCGGGATCTAAATTTTAGTTGTATTTACTTGGGCCATGATTATGTTCCCAAACTCTCCTACTTCGGGCTCTCCATAACCATCCCTCGATCCCATGAAATCATATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

222

Amino Acids

25.03

Weight (kDa)

6.2

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	108, 121, 159, 272, 573, 642
AcsI	RAATTY	1 cut(s)	571
AcvI	CACGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	144, 320
AfiI	CCNNNNNNNGG	3 cut(s)	477, 546, 624
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	2 cut(s)	62, 476
AluBI	AGCT	6 cut(s)	211, 333, 365, 461, 485, 508
AluI	AGCT	6 cut(s)	211, 333, 365, 461, 485, 508
Alw21I	GWGCWC	2 cut(s)	213, 406
AlwI	GGATC	6 cut(s)	108, 121, 159, 272, 573, 642
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	548, 592
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	571
Asp700I	GAANNNNTTC	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	592
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	52
AvrII	CCTAGG	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	213, 630
BbrPI	CACGTG	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	213, 406
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	3 cut(s)	104, 164, 647
BciT130I	CCWGG	2 cut(s)	64, 478
BcnI	CCSGG	1 cut(s)	563
BfaI	CTAG	8 cut(s)	146, 290, 362, 407, 462, 486, 491, 546
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	1 cut(s)	506
BlnI	CCTAGG	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	507
BmcAI	AGTACT	2 cut(s)	144, 320
Bme1390I	CCNGG	3 cut(s)	64, 478, 563
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	99, 115
BmrFI	CCNGG	3 cut(s)	64, 478, 563
BmsI	GCATC	3 cut(s)	66, 226, 337
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpuMI	CCSGG	1 cut(s)	563
Bsa29I	ATCGAT	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	3 cut(s)	477, 546, 624
BseBI	CCWGG	2 cut(s)	64, 478
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	2 cut(s)	352, 639
BseLI	CCNNNNNNNGG	3 cut(s)	477, 546, 624
BseMII	CTCAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	517
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	550, 594
BshVI	ATCGAT	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	213, 406
BsiSI	CCGG	1 cut(s)	562
BslI	CCNNNNNNNGG	3 cut(s)	477, 546, 624
BsnI	GGCC	2 cut(s)	550, 594
Bsp1286I	GDGCHC	3 cut(s)	213, 406, 630
Bsp143I	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
BspANI	GGCC	2 cut(s)	550, 594
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	99, 115
BspPI	GGATC	6 cut(s)	108, 121, 159, 272, 573, 642
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
BssT1I	CCWWGG	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	64, 478
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	78, 335, 510
BstDEI	CTNAG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	352, 639
BstKTI	GATC	8 cut(s)	116, 154, 267, 298, 302, 359, 568, 650
BstMBI	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
BstMCI	CGRYCG	1 cut(s)	298
BstNI	CCWGG	2 cut(s)	64, 478
BstSCI	CCNGG	3 cut(s)	62, 476, 561
BstV1I	GCAGC	1 cut(s)	517
BstX2I	RGATCY	5 cut(s)	113, 151, 264, 356, 565
BstYI	RGATCY	5 cut(s)	113, 151, 264, 356, 565
Bsu15I	ATCGAT	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	550, 594
BsuTUI	ATCGAT	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	352, 639
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	3 cut(s)	78, 335, 510
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	592
ClaI	ATCGAT	1 cut(s)	298
CsiI	ACCWGGT	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	143, 319
CviAII	CATG	3 cut(s)	413, 596, 653
CviQI	GTAC	2 cut(s)	143, 319
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	8 cut(s)	115, 153, 266, 297, 301, 358, 567, 649
DpnII	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	545
Eco24I	GRGCYC	2 cut(s)	213, 630
Eco53kI	GAGCTC	1 cut(s)	211
Eco72I	CACGTG	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	62, 476
EcoT14I	CCWWGG	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	213, 630
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	3 cut(s)	416, 599, 656
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	3 cut(s)	412, 595, 652
FauNDI	CATATG	1 cut(s)	662
Fnu4HI	GCNGC	1 cut(s)	506
FokI	GGATG	2 cut(s)	359, 626
FriOI	GRGCYC	2 cut(s)	213, 630
Fsp4HI	GCNGC	1 cut(s)	506
FspBI	CTAG	8 cut(s)	146, 290, 362, 407, 462, 486, 491, 546
GluI	GCNGC	1 cut(s)	506
HaeIII	GGCC	2 cut(s)	550, 594
HapII	CCGG	1 cut(s)	562
Hin1II	CATG	3 cut(s)	416, 599, 656
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	3 cut(s)	124, 290, 371
HpyAV	CCTTC	1 cut(s)	440
HpyCH4IV	ACGT	2 cut(s)	33, 326
HpyCH4V	TGCA	7 cut(s)	57, 246, 253, 350, 412, 422, 512
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	33, 326
Hsp92II	CATG	3 cut(s)	416, 599, 656
Kzo9I	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	7 cut(s)	49, 76, 114, 319, 463, 490, 575
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	3 cut(s)	66, 226, 337
MabI	ACCWGGT	1 cut(s)	62
MaeI	CTAG	8 cut(s)	146, 290, 362, 407, 462, 486, 491, 546
MaeII	ACGT	2 cut(s)	33, 326
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	8 cut(s)	115, 153, 266, 297, 301, 358, 567, 649
MboI	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
MflI	RGATCY	5 cut(s)	113, 151, 264, 356, 565
MhlI	GDGCHC	3 cut(s)	213, 406, 630
MluCI	AATT	2 cut(s)	193, 571
MnlI	CCTC	6 cut(s)	88, 127, 142, 337, 443, 654
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	312, 473
MslI	CAYNNNNRTG	2 cut(s)	417, 600
MspI	CCGG	1 cut(s)	562
MspR9I	CCNGG	3 cut(s)	64, 478, 563
MvaI	CCWGG	2 cut(s)	64, 478
NciI	CCSGG	1 cut(s)	563
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
NlaIII	CATG	3 cut(s)	416, 599, 656
NlaIV	GGNNCC	2 cut(s)	99, 115
NmuCI	GTSAC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	1 cut(s)	507
Ple19I	CGATCG	1 cut(s)	298
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	62, 476
PspCI	CACGTG	1 cut(s)	34
PspGI	CCWGG	2 cut(s)	62, 476
PspN4I	GGNNCC	2 cut(s)	99, 115
PspPI	GGNCC	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	5 cut(s)	113, 151, 264, 356, 565
PvuI	CGATCG	1 cut(s)	298
RsaI	GTAC	2 cut(s)	144, 320
RsaNI	GTAC	2 cut(s)	143, 319
RseI	CAYNNNNRTG	2 cut(s)	417, 600
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	312, 473
SatI	GCNGC	1 cut(s)	506
Sau3AI	GATC	8 cut(s)	113, 151, 264, 295, 299, 356, 565, 647
Sau96I	GGNCC	1 cut(s)	592
ScaI	AGTACT	2 cut(s)	144, 320
ScrFI	CCNGG	3 cut(s)	64, 478, 563
SduI	GDGCHC	3 cut(s)	213, 406, 630
SexAI	ACCWGGT	1 cut(s)	62
SfaNI	GCATC	3 cut(s)	66, 226, 337
SmiMI	CAYNNNNRTG	2 cut(s)	417, 600
Sse9I	AATT	2 cut(s)	193, 571
SspMI	CTAG	8 cut(s)	146, 290, 362, 407, 462, 486, 491, 546
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	62, 476, 561
StyI	CCWWGG	1 cut(s)	545
TaiI	ACGT	2 cut(s)	36, 329
TaqI	TCGA	2 cut(s)	298, 646
TasI	AATT	2 cut(s)	193, 571
TatI	WGTACW	2 cut(s)	142, 318
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	312, 473
Tru9I	TTAA	2 cut(s)	312, 473
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	5 cut(s)	17, 429, 459, 513, 669
TspRI	CASTG	1 cut(s)	406
XagI	CCTNNNNNAGG	1 cut(s)	544
XapI	RAATTY	1 cut(s)	571
XbaI	TCTAGA	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	8 cut(s)	146, 290, 362, 407, 462, 486, 491, 546
ZrmI	AGTACT	2 cut(s)	144, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.