Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

21384676 .. 21387399

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAAGAAGCAGTATCTGAAATCTGGATCTGGGACAAGGAAGGAAAAGGACAAGGCGAAGAGGTGGTTCTTGGATAACGGAAGCATCTTCTTAAGAGAACTTGTAGCTGATTGTAACGGTAAATCCATTCCTATTCGCAGTTTTTCTCCTGAGCAGATATTGAAAGCCACCAACAATTTCGATTCTAGCTGTTTTGTCTCGCAAGATGTATACTATAAATGGTATAGAGGTGAAATTGAAGATAGATCTTACATGATCAAGAGATTCTCAGAGGATGAGATTACAGGAAAACGACATAGAGTTAAAGAGGTTTACAACGACATTGTCTTGTCTGCTCGGATGAGTAATCACAGTAACTTTCTTCAACTTTTAGGATGTTGTCTCGAGTTTCCTTTTCCGGTTCTTGTGTTTGAATTTGCAGAACATGGAGCTATGAATCAGCGAGGAGGTGTTATAGTTAATGGTGAAGAATCTTTATTGCCGTGGAGTGTACGGTTGAAGATTGGGAAAGAGATTGCTAATGCGGTGACTTATCTTCACACGGCATTCCCTAAGATCATCATACATAGAGATGTTAAACCGATGCATGTTTTCTTGGACAAGAATTGGACCGCAAAGTTGTCTGATTTATCCTTCTCAATATCTCTACCTGAGGGAAAATCGAGAATAGAAGCTGAATGGGTTCTAGGAACATTTGGGTACATCGATCCATTATATCATAAGACGTGTTTTGTGACTGAATATACAGATGTCTACAGCTTTGGAATCTGTTTGCTGGTTATTATTACTGGTAAACCGGCTATCATGACTATTTCTGATGGAGATCTCCAAGGTATTCTTAGCTTAGTGAGAGAGTTATGTGAGAATGGGAAGCTTGATGAAGTGATAGATCCGAGGTTGATGAAAGATATCACAAGTGGTCAAAGGTTGCAAGTGGAAGCATGTGTGGTGCTGGCTTTGAGATGCTGTAAGGAGAGAGATGAAGACAGACCAAAGATGATCCAAGTAGCTAAAGAACTCAAGCAGATTGAAGCATCATTGAAAAATTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

351

Amino Acids

40.09

Weight (kDa)

8.23

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 337	1.5e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 340	4.7e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	210, 753
AciI	CCGC	2 cut(s)	524, 612
AclWI	GGATC	4 cut(s)	34, 701, 884, 994
AcsI	RAATTY	2 cut(s)	413, 1045
AfaI	GTAC	2 cut(s)	492, 701
AflII	CTTAAG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	7 cut(s)	163, 239, 365, 413, 499, 1031, 1042
AjiI	CACGTC	1 cut(s)	726
AluBI	AGCT	9 cut(s)	107, 189, 431, 674, 759, 843, 874, 1010, 1053
AluI	AGCT	9 cut(s)	107, 189, 431, 674, 759, 843, 874, 1010, 1053
Alw26I	GTCTC	2 cut(s)	202, 386
AlwI	GGATC	4 cut(s)	34, 701, 884, 994
AlwNI	CAGNNNCTG	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	413, 1045
Asp700I	GAANNNNTTC	1 cut(s)	681
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	242, 476, 538
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	609
AxyI	CCTNAGG	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	990
BccI	CCATC	1 cut(s)	812
BceAI	ACGGC	2 cut(s)	466, 558
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	202, 386
BfaI	CTAG	4 cut(s)	186, 686, 1050, 1054
BfmI	CTRYAG	1 cut(s)	754
BfrI	CTTAAG	1 cut(s)	91
BglII	AGATCT	2 cut(s)	245, 823
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	609
BmsI	GCATC	4 cut(s)	93, 573, 953, 1043
BpiI	GAAGAC	1 cut(s)	990
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	1004
Bsa29I	ATCGAT	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	3 cut(s)	482, 829, 893
BsaWI	WCCGGW	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	796
Bse1I	ACTGG	1 cut(s)	793
Bse21I	CCTNAGG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	822
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	3 cut(s)	482, 829, 893
BseGI	GGATG	3 cut(s)	280, 345, 380
BseJI	GATNNNNATC	1 cut(s)	822
BseMII	CTCAG	3 cut(s)	141, 282, 642
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	459
BshVI	ATCGAT	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	398, 797
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	202, 386
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	383
Bsp143I	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
BspACI	CCGC	2 cut(s)	524, 612
BspCNI	CTCAG	3 cut(s)	142, 281, 643
BspDI	ATCGAT	1 cut(s)	705
BspHI	TCATGA	1 cut(s)	804
BspPI	GGATC	4 cut(s)	34, 701, 884, 994
BspTI	CTTAAG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	796
BsrI	ACTGG	1 cut(s)	793
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	3 cut(s)	482, 829, 893
BssMI	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
BssNAI	GTATAC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	829
Bst1107I	GTATAC	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	119, 353, 495
Bst6I	CTCTTC	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	954
BstDEI	CTNAG	6 cut(s)	150, 268, 552, 651, 839, 844
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	280, 345, 380
BstKTI	GATC	8 cut(s)	29, 248, 258, 558, 709, 826, 892, 1002
BstMAI	GTCTC	2 cut(s)	202, 386
BstMBI	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
BstNSI	RCATGY	2 cut(s)	590, 945
BstSFI	CTRYAG	1 cut(s)	754
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	4 cut(s)	26, 245, 823, 889
BstYI	RGATCY	4 cut(s)	26, 245, 823, 889
BstZ17I	GTATAC	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	705
Bsu36I	CCTNAGG	1 cut(s)	651
BsuTUI	ATCGAT	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	482
BtrI	CACGTC	1 cut(s)	726
BtsCI	GGATG	3 cut(s)	280, 345, 380
Cac8I	GCNNGC	1 cut(s)	954
CaiI	CAGNNNCTG	1 cut(s)	16
CciI	TCATGA	1 cut(s)	804
Cfr10I	RCCGGY	1 cut(s)	796
Cfr13I	GGNCC	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	705
Csp6I	GTAC	2 cut(s)	491, 700
CviAII	CATG	5 cut(s)	253, 425, 587, 805, 942
CviQI	GTAC	2 cut(s)	491, 700
DdeI	CTNAG	6 cut(s)	150, 268, 552, 651, 839, 844
DpnI	GATC	8 cut(s)	28, 247, 257, 557, 708, 825, 891, 1001
DpnII	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	829
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	1 cut(s)	829
EcoT22I	ATGCAT	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	829
FaeI	CATG	5 cut(s)	256, 428, 590, 808, 945
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	5 cut(s)	252, 424, 586, 804, 941
FbaI	TGATCA	1 cut(s)	255
FblI	GTMKAC	2 cut(s)	210, 753
FokI	GGATG	3 cut(s)	287, 352, 387
FspBI	CTAG	4 cut(s)	186, 686, 1050, 1054
HapII	CCGG	2 cut(s)	398, 797
Hin1II	CATG	5 cut(s)	256, 428, 590, 808, 945
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	5 cut(s)	182, 264, 436, 470, 765
HpaII	CCGG	2 cut(s)	398, 797
HphI	GGTGA	3 cut(s)	242, 476, 538
Hpy166II	GTNNAC	5 cut(s)	211, 313, 491, 754, 794
Hpy188I	TCNGA	6 cut(s)	18, 271, 339, 625, 817, 894
Hpy188III	TCNNGA	6 cut(s)	24, 149, 259, 383, 663, 805
Hpy8I	GTNNAC	5 cut(s)	211, 313, 491, 754, 794
HpyAV	CCTTC	2 cut(s)	34, 643
HpyCH4III	ACNGT	3 cut(s)	119, 353, 495
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	3 cut(s)	419, 586, 931
HpyF3I	CTNAG	6 cut(s)	150, 268, 552, 651, 839, 844
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	5 cut(s)	256, 428, 590, 808, 945
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
LmnI	GCTCC	1 cut(s)	428
LweI	GCATC	4 cut(s)	93, 573, 953, 1043
MaeI	CTAG	4 cut(s)	186, 686, 1050, 1054
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	4 cut(s)	113, 353, 526, 733
MalI	GATC	8 cut(s)	28, 247, 257, 557, 708, 825, 891, 1001
MboI	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
MboII	GAAGA	9 cut(s)	16, 70, 79, 251, 353, 479, 511, 527, 995
MflI	RGATCY	4 cut(s)	26, 245, 823, 889
MluCI	AATT	5 cut(s)	175, 234, 413, 604, 1045
MnlI	CCTC	8 cut(s)	54, 221, 265, 301, 437, 440, 646, 888
Mph1103I	ATGCAT	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	4 cut(s)	92, 303, 459, 576
MslI	CAYNNNNRTG	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	91
MspI	CCGG	2 cut(s)	398, 797
Mva1269I	GAATGC	1 cut(s)	545
NdeII	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
NlaIII	CATG	5 cut(s)	256, 428, 590, 808, 945
NmuCI	GTSAC	2 cut(s)	526, 733
NsiI	ATGCAT	1 cut(s)	588
NspI	RCATGY	2 cut(s)	590, 945
PaeR7I	CTCGAG	1 cut(s)	383
PagI	TCATGA	1 cut(s)	804
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	5 cut(s)	182, 264, 436, 470, 765
PflFI	GACNNNGTC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	609
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	4 cut(s)	26, 245, 823, 889
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	2 cut(s)	492, 701
RsaNI	GTAC	2 cut(s)	491, 700
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	4 cut(s)	92, 303, 459, 576
Sau3AI	GATC	8 cut(s)	26, 245, 255, 555, 706, 823, 889, 999
Sau96I	GGNCC	1 cut(s)	609
SfaNI	GCATC	4 cut(s)	93, 573, 953, 1043
SfcI	CTRYAG	1 cut(s)	754
Sfr274I	CTCGAG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	3 cut(s)	91, 383, 1019
SmoI	CTYRAG	3 cut(s)	91, 383, 1019
Sse9I	AATT	5 cut(s)	175, 234, 413, 604, 1045
SsiI	CCGC	2 cut(s)	524, 612
SspMI	CTAG	4 cut(s)	186, 686, 1050, 1054
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	3 cut(s)	119, 353, 495
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	4 cut(s)	180, 384, 662, 705
TasI	AATT	5 cut(s)	175, 234, 413, 604, 1045
TfiI	GAWTC	5 cut(s)	182, 264, 436, 470, 765
Tru1I	TTAA	4 cut(s)	92, 303, 459, 576
Tru9I	TTAA	4 cut(s)	92, 303, 459, 576
TseFI	GTSAC	2 cut(s)	526, 733
Tsp45I	GTSAC	2 cut(s)	526, 733
TspDTI	ATGAA	5 cut(s)	17, 449, 894, 917, 996
TspGWI	ACGGA	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	323
Vha464I	CTTAAG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	2 cut(s)	413, 1045
XceI	RCATGY	2 cut(s)	590, 945
XhoI	CTCGAG	1 cut(s)	383
XmiI	GTMKAC	2 cut(s)	210, 753
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	4 cut(s)	186, 686, 1050, 1054
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.