Rh6DG037300

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
3878492 .. 3881778
3287 bp
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UTR
Exon/CDS
Intron
Rh6DG037300.1

Sequence Viewer

Length: 702 bp
ATGCTATCTAAACTCTTGTACTCTTTGCTTCCATGTTTGAGAAAGGAGGGAGAAGATGCTGATAGATCATTCTTGGATAATGGAAGCAAATTATTAGAGGATCTGATTGCTTCTTGTGATGGAAAATCTAATCCTATTCGCCATTACTCTGCTGATGAACTTGTCAGGGCAACCAACAACTTCCATCCTTCTTGTCATATATCTGGTGGATACCGTTTATATAAGGGTTTTCTAGACAACCGATTTGTAATCATTAAAAGGGGAGAGAAAGTTTTACGCCACAGGCAGCAGGATGAGGGTATTCGTGACATTATAATATCAACACAGATGAGCACTCATAAGAATGTTTTGAAACTGTTGGGCTGCTGCTTAGAGTTCCCTGTACCGGCTCTGGTGCACGAATATGCAGCCAAAGGAGTTCTCAATTCTAAAGGAGCTTATCAACGAAATCAAGCAGGAGAAGAATTCTACCTTGTGTCATACGTGAGCTTACATGCTTCTGATGACCAGTTTCTGACTATTGTGGATCCTAAAATACTTGAGGAGTTAAAAGGGGAAGATGAGCAAGCACAACAGCAGCAGTTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAAGAGGAAAGTGAACGAAGGCCAGATATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAAGTCTATTAATCCTTGTTAG

Protein Analysis

233

Amino Acids

26.46

Weight (kDa)

5.78

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AclWI GGATC 3 cut(s) 108, 521, 534
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 464
AfaI GTAC 3 cut(s) 20, 384, 672
AfiI CCNNNNNNNGG 2 cut(s) 385, 601
AgsI TTSAA 1 cut(s) 352
AluBI AGCT 2 cut(s) 437, 489
AluI AGCT 2 cut(s) 437, 489
Alw21I GWGCWC 2 cut(s) 335, 399
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 3 cut(s) 108, 521, 534
AlwNI CAGNNNCTG 1 cut(s) 514
AoxI GGCC 2 cut(s) 638, 657
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 5 cut(s) 286, 363, 366, 407, 577
ApoI RAATTY 1 cut(s) 464
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AseI ATTAAT 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 399
BalI TGGCCA 1 cut(s) 659
BamHI GGATCC 1 cut(s) 526
Bbv12I GWGCWC 2 cut(s) 335, 399
BbvI GCAGC 5 cut(s) 298, 350, 353, 419, 589
BccI CCATC 2 cut(s) 113, 192
BciVI GTATCC 1 cut(s) 203
BfaI CTAG 2 cut(s) 233, 596
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 5 cut(s) 287, 364, 367, 408, 578
BlsI GCNGC 5 cut(s) 288, 365, 368, 409, 579
BmiI GGNNCC 1 cut(s) 528
BmsI GCATC 1 cut(s) 46
BpuEI CTTGAG 2 cut(s) 560, 603
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 484
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 601
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 508, 606
BseCI ATCGAT 1 cut(s) 651
BseGI GGATG 2 cut(s) 184, 298
BseLI CCNNNNNNNGG 2 cut(s) 385, 601
BseNI ACTGG 2 cut(s) 508, 606
BseRI GAGGAG 1 cut(s) 557
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 5 cut(s) 298, 350, 353, 419, 589
BshFI GGCC 2 cut(s) 640, 659
BshVI ATCGAT 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 335, 399
BsiSI CCGG 1 cut(s) 386
BslI CCNNNNNNNGG 2 cut(s) 385, 601
BsnI GGCC 2 cut(s) 640, 659
Bsp1286I GDGCHC 2 cut(s) 335, 399
Bsp143I GATC 4 cut(s) 65, 100, 526, 648
BspANI GGCC 2 cut(s) 640, 659
BspDI ATCGAT 1 cut(s) 651
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 3 cut(s) 108, 521, 534
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 2 cut(s) 508, 606
BssAI RCCGGY 1 cut(s) 385
BssMI GATC 4 cut(s) 65, 100, 526, 648
Bst4CI ACNGT 2 cut(s) 215, 357
BstAPI GCANNNNNTGC 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 184, 298
BstKTI GATC 4 cut(s) 68, 103, 529, 651
BstMBI GATC 4 cut(s) 65, 100, 526, 648
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNSI RCATGY 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 5 cut(s) 298, 350, 353, 419, 589
BstX2I RGATCY 2 cut(s) 100, 526
BstYI RGATCY 2 cut(s) 100, 526
Bsu15I ATCGAT 1 cut(s) 651
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 2 cut(s) 640, 659
BsuTUI ATCGAT 1 cut(s) 651
BtsCI GGATG 2 cut(s) 184, 298
BtsIMutI CAGTG 1 cut(s) 599
Cac8I GCNNGC 1 cut(s) 567
CaiI CAGNNNCTG 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 651
Csp6I GTAC 3 cut(s) 19, 383, 671
CviAII CATG 3 cut(s) 33, 494, 587
CviJI RGCY 7 cut(s) 363, 389, 410, 437, 489, 640, 659
CviKI_1 RGCY 7 cut(s) 363, 389, 410, 437, 489, 640, 659
CviQI GTAC 3 cut(s) 19, 383, 671
DdeI CTNAG 1 cut(s) 370
DpnI GATC 4 cut(s) 67, 102, 528, 650
DpnII GATC 4 cut(s) 65, 100, 526, 648
EaeI YGGCCR 1 cut(s) 657
EcoRI GAATTC 1 cut(s) 464
FaeI CATG 3 cut(s) 36, 497, 590
FatI CATG 3 cut(s) 32, 493, 586
Fnu4HI GCNGC 5 cut(s) 287, 364, 367, 408, 578
FokI GGATG 2 cut(s) 171, 305
Fsp4HI GCNGC 5 cut(s) 287, 364, 367, 408, 578
FspBI CTAG 2 cut(s) 233, 596
GluI GCNGC 5 cut(s) 287, 364, 367, 408, 578
HaeIII GGCC 2 cut(s) 640, 659
HapII CCGG 1 cut(s) 386
Hin1II CATG 3 cut(s) 36, 497, 590
HpaII CCGG 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 397, 632
Hpy188I TCNGA 3 cut(s) 105, 502, 516
Hpy188III TCNNGA 3 cut(s) 233, 305, 620
Hpy8I GTNNAC 2 cut(s) 397, 632
HpyAV CCTTC 2 cut(s) 198, 630
HpyCH4III ACNGT 2 cut(s) 215, 357
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 4 cut(s) 397, 407, 586, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 3 cut(s) 36, 497, 590
Kzo9I GATC 4 cut(s) 65, 100, 526, 648
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 5 cut(s) 298, 350, 353, 419, 589
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 233, 596
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 67, 102, 528, 650
MboI GATC 4 cut(s) 65, 100, 526, 648
MboII GAAGA 3 cut(s) 65, 473, 569
MflI RGATCY 2 cut(s) 100, 526
MhlI GDGCHC 2 cut(s) 335, 399
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 4 cut(s) 89, 424, 464, 675
MluNI TGGCCA 1 cut(s) 659
MnlI CCTC 5 cut(s) 40, 91, 289, 535, 616
Mox20I TGGCCA 1 cut(s) 659
MscI TGGCCA 1 cut(s) 659
MseI TTAA 3 cut(s) 255, 548, 690
MslI CAYNNNNRTG 3 cut(s) 342, 402, 610
Msp20I TGGCCA 1 cut(s) 659
MspI CCGG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 583
NdeII GATC 4 cut(s) 65, 100, 526, 648
NlaIII CATG 3 cut(s) 36, 497, 590
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 1 cut(s) 497
PkrI GCNGC 5 cut(s) 288, 365, 368, 409, 579
Ppu21I YACGTR 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 690
PsiI TTATAA 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 100, 526
RsaI GTAC 3 cut(s) 20, 384, 672
RsaNI GTAC 3 cut(s) 19, 383, 671
RseI CAYNNNNRTG 3 cut(s) 342, 402, 610
SaqAI TTAA 3 cut(s) 255, 548, 690
SatI GCNGC 5 cut(s) 287, 364, 367, 408, 578
Sau3AI GATC 4 cut(s) 65, 100, 526, 648
SduI GDGCHC 2 cut(s) 335, 399
SetI ASST 4 cut(s) 439, 474, 486, 491
SfaNI GCATC 1 cut(s) 46
SmiMI CAYNNNNRTG 3 cut(s) 342, 402, 610
SmlI CTYRAG 2 cut(s) 539, 618
SmoI CTYRAG 2 cut(s) 539, 618
Sse9I AATT 4 cut(s) 89, 424, 464, 675
SspMI CTAG 2 cut(s) 233, 596
TaaI ACNGT 2 cut(s) 215, 357
TaiI ACGT 1 cut(s) 486
TaqI TCGA 1 cut(s) 651
TasI AATT 4 cut(s) 89, 424, 464, 675
TatI WGTACW 1 cut(s) 18
Tru1I TTAA 3 cut(s) 255, 548, 690
Tru9I TTAA 3 cut(s) 255, 548, 690
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 5 cut(s) 286, 363, 366, 407, 577
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 606
VneI GTGCAC 1 cut(s) 395
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 1 cut(s) 464
XbaI TCTAGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 497
XspI CTAG 2 cut(s) 233, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.