Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

2995681 .. 2996310

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0024600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAACCGCAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAACTGGGAGAAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAAGTCTCGAGAGAAGCAGAAGAAAAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGTTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAATATATTAACTTCGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCAATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTTCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

209

Amino Acids

23.38

Weight (kDa)

8.91

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	9.7e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	2 cut(s)	78, 160
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	497
AciI	CCGC	4 cut(s)	8, 82, 546, 625
AclWI	GGATC	3 cut(s)	188, 363, 460
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	203, 337
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	220, 473
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	5 cut(s)	130, 193, 404, 580, 605
AluI	AGCT	5 cut(s)	130, 193, 404, 580, 605
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	191, 258
AlwI	GGATC	3 cut(s)	188, 363, 460
Ama87I	CYCGRG	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	477
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	153, 276
AsuHPI	GGTGA	2 cut(s)	335, 512
AsuII	TTCGAA	1 cut(s)	372
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	300
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	582
BccI	CCATC	2 cut(s)	26, 530
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BcoDI	GTCTC	2 cut(s)	191, 258
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	2 cut(s)	78, 160
BisI	GCNGC	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	626
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	4 cut(s)	6, 155, 337, 623
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	392
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	581
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	596
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	58
Bse21I	CCTNAGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	342, 595
BseNI	ACTGG	1 cut(s)	58
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	191, 258
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	300, 582
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	4 cut(s)	8, 82, 546, 625
BspCNI	CTCAG	2 cut(s)	343, 594
BspLI	GGNNCC	4 cut(s)	6, 155, 337, 623
BspMI	ACCTGC	2 cut(s)	78, 160
BspPI	GGATC	3 cut(s)	188, 363, 460
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
Bst4CI	ACNGT	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	351, 581
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 358, 455
BstMAI	GTCTC	2 cut(s)	191, 258
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 79, 401, 591
BstNSI	RCATGY	1 cut(s)	73
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	180, 452
BstYI	RGATCY	2 cut(s)	180, 452
Bsu36I	CCTNAGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	2 cut(s)	78, 160
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	2 cut(s)	202, 336
CviAII	CATG	6 cut(s)	70, 293, 301, 463, 497, 520
CviJI	RGCY	8 cut(s)	130, 193, 404, 561, 580, 585, 605, 624
CviKI_1	RGCY	8 cut(s)	130, 193, 404, 561, 580, 585, 605, 624
CviQI	GTAC	2 cut(s)	202, 336
DdeI	CTNAG	2 cut(s)	351, 581
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 357, 454
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	582
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	582
FaeI	CATG	6 cut(s)	73, 296, 304, 466, 500, 523
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	69, 292, 300, 462, 496, 519
Fnu4HI	GCNGC	1 cut(s)	625
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	1 cut(s)	625
GluI	GCNGC	1 cut(s)	625
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
Hin1II	CATG	6 cut(s)	73, 296, 304, 466, 500, 523
HinfI	GANTC	3 cut(s)	94, 117, 374
HphI	GGTGA	2 cut(s)	335, 512
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	2 cut(s)	177, 286
Hpy188III	TCNNGA	5 cut(s)	220, 241, 255, 257, 619
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	2 cut(s)	424, 488
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 79, 401, 591
HpyF3I	CTNAG	2 cut(s)	351, 581
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	73, 296, 304, 466, 500, 523
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
LmnI	GCTCC	2 cut(s)	84, 621
LweI	GCATC	1 cut(s)	392
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	515, 548
MalI	GATC	6 cut(s)	108, 182, 212, 310, 357, 454
MboI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
MboII	GAAGA	4 cut(s)	280, 369, 390, 535
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	2 cut(s)	180, 452
MhlI	GDGCHC	2 cut(s)	300, 582
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 346, 492, 496, 533, 589
Mph1103I	ATGCAT	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	366, 420
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	3 cut(s)	193, 404, 627
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	4 cut(s)	16, 79, 401, 591
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
NlaIII	CATG	6 cut(s)	73, 296, 304, 466, 500, 523
NlaIV	GGNNCC	4 cut(s)	6, 155, 337, 623
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	372
OliI	CACNNNNGTG	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	117, 374
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	626
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	6, 155, 337, 623
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 452
PvuII	CAGCTG	2 cut(s)	193, 404
RsaI	GTAC	2 cut(s)	203, 337
RsaNI	GTAC	2 cut(s)	202, 336
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	366, 420
SatI	GCNGC	1 cut(s)	625
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	2 cut(s)	300, 582
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	102, 162
Sfr274I	CTCGAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	2 cut(s)	153, 276
SlaI	CTCGAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	255, 575
SmoI	CTYRAG	2 cut(s)	255, 575
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	8, 82, 546, 625
SstI	GAGCTC	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	213, 256, 372, 534
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	117, 374
Tru1I	TTAA	2 cut(s)	366, 420
Tru9I	TTAA	2 cut(s)	366, 420
TseFI	GTSAC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	281, 473, 536
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.