Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

72017934 .. 72046133

Gene Structure 28200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0531800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGCCCAAAGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCCGAGAAGACCACCGTGGCCGAGAAAGCCCCGGCGGAGAAGAAGCCCAAGGCCGGAAAGAAGCTCCCGAAGGAAGCCGGAGCCGCCGCCGGAGACAAGAAGAAGAAGAGGGCCAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTCCACCCTGACATCGGAATCTCCAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTGGCTCAGGAGTCGTCGAGGCTCGCCAGGTACAACAAGAAGCCGACGATTACTTCCCGGGAGATCCAGACGGCGGTGAGGCTTGTGCTTCCCGGTGAATTGGCTAAGCATGCTGTTTCTGAGGGGACTAAGGCGGTGACCAAGTTCACAAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

15.96

Weight (kDa)

10.11

Isoelectric Point (pI)

25.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	46 - 122	3.1e-20	Core histone H2A/H2B/H3/H4 domain
Histone_ABTB	PF26281	76 - 145	4.4e-08	Histone domain in ABTB family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	29
AciI	CCGC	7 cut(s)	27, 29, 77, 126, 129, 356, 416
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	2 cut(s)	42, 60
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	4 cut(s)	95, 205, 221, 355
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	4 cut(s)	106, 258, 283, 435
AluI	AGCT	4 cut(s)	106, 258, 283, 435
Alw26I	GTCTC	2 cut(s)	129, 164
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	5 cut(s)	42, 60, 93, 153, 237
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	153, 196, 208
AsuC2I	CCSGG	4 cut(s)	74, 340, 341, 375
AsuHPI	GGTGA	3 cut(s)	370, 389, 430
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	2 cut(s)	196, 208
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	310
BcnI	CCSGG	4 cut(s)	74, 340, 341, 375
BcoDI	GTCTC	2 cut(s)	129, 164
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	126, 129
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	2 cut(s)	127, 130
Bme1390I	CCNGG	5 cut(s)	74, 310, 340, 341, 375
Bme18I	GGWCC	2 cut(s)	196, 208
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	3 cut(s)	153, 196, 208
BmiI	GGNNCC	2 cut(s)	6, 124
BmrFI	CCNGG	5 cut(s)	74, 310, 340, 341, 375
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuMI	CCSGG	4 cut(s)	74, 340, 341, 375
BsaBI	GATNNNNATC	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	6 cut(s)	27, 57, 72, 90, 240, 339
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 205, 221, 355
Bse118I	RCCGGY	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	6 cut(s)	27, 57, 72, 90, 240, 339
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	4 cut(s)	95, 205, 221, 355
BseMII	CTCAG	2 cut(s)	302, 393
BseX3I	CGGCCG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	5 cut(s)	44, 62, 95, 155, 239
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	7 cut(s)	41, 74, 96, 120, 132, 340, 375
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	4 cut(s)	95, 205, 221, 355
BsmAI	GTCTC	2 cut(s)	129, 164
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	5 cut(s)	44, 62, 95, 155, 239
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	180, 345
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	7 cut(s)	27, 29, 77, 126, 129, 356, 416
BspANI	GGCC	5 cut(s)	44, 62, 95, 155, 239
BspCNI	CTCAG	2 cut(s)	301, 394
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	6, 124
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	6 cut(s)	27, 57, 72, 90, 240, 339
BssMI	GATC	2 cut(s)	180, 345
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	90, 240
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	143, 155
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	5 cut(s)	27, 42, 285, 306, 393
BstDEI	CTNAG	4 cut(s)	288, 387, 402, 411
BstDSI	CCRYGG	3 cut(s)	27, 57, 240
BstEII	GGTNACC	1 cut(s)	418
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	183, 348
BstMAI	GTCTC	2 cut(s)	129, 164
BstMBI	GATC	2 cut(s)	180, 345
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 68, 125, 392
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	395
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	5 cut(s)	72, 308, 338, 339, 373
BstUI	CGCG	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	180, 345
BstYI	RGATCY	2 cut(s)	180, 345
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	5 cut(s)	44, 62, 95, 155, 239
BtgI	CCRYGG	3 cut(s)	27, 57, 240
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	5 cut(s)	27, 42, 285, 306, 393
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	153, 196, 208
Cfr42I	CCGCGG	1 cut(s)	30
Cfr9I	CCCGGG	1 cut(s)	339
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	241, 250, 392
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	4 cut(s)	288, 387, 402, 411
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	182, 347
DpnII	GATC	2 cut(s)	180, 345
EaeI	YGGCCR	2 cut(s)	42, 60
EagI	CGGCCG	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	143, 155
EarI	CTCTTC	2 cut(s)	143, 155
EciI	GGCGGA	1 cut(s)	92
EclXI	CGGCCG	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	90, 240
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	2 cut(s)	196, 208
Eco52I	CGGCCG	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	90, 240
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	90, 240
FaeI	CATG	3 cut(s)	244, 253, 395
FaiI	YATR	3 cut(s)	242, 251, 393
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	240, 249, 391
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	126, 129
Fsp4HI	GCNGC	2 cut(s)	126, 129
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	126, 129
GsuI	CTGGAG	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	44, 62, 95, 155, 239
HapII	CCGG	7 cut(s)	41, 74, 96, 120, 132, 340, 375
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	244, 253, 395
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	225, 293
HpaII	CCGG	7 cut(s)	41, 74, 96, 120, 132, 340, 375
HphI	GGTGA	3 cut(s)	370, 389, 430
Hpy166II	GTNNAC	2 cut(s)	211, 429
Hpy188I	TCNGA	2 cut(s)	224, 403
Hpy188III	TCNNGA	8 cut(s)	109, 169, 199, 250, 277, 290, 349, 438
Hpy8I	GTNNAC	2 cut(s)	211, 429
Hpy99I	CGWCG	3 cut(s)	170, 301, 331
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 68, 125, 392
HpyF3I	CTNAG	4 cut(s)	288, 387, 402, 411
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	244, 253, 395
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
KspI	CCGCGG	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	180, 345
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	2 cut(s)	111, 122
LweI	GCATC	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	2 cut(s)	182, 347
MboI	GATC	2 cut(s)	180, 345
MflI	RGATCY	2 cut(s)	180, 345
MluCI	AATT	1 cut(s)	380
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	144, 294, 354, 397
MroNI	GCCGGC	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	7 cut(s)	41, 74, 96, 120, 132, 340, 375
MspR9I	CCNGG	5 cut(s)	74, 310, 340, 341, 375
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	11, 68, 125, 392
NaeI	GCCGGC	1 cut(s)	42
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	4 cut(s)	74, 340, 341, 375
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	180, 345
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	244, 253, 395
NlaIV	GGNNCC	2 cut(s)	6, 124
NmeAIII	GCCGAG	3 cut(s)	40, 70, 88
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	395
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	127, 130
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	308
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	6, 124
PspPI	GGNCC	3 cut(s)	153, 196, 208
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	180, 345
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SacII	CCGCGG	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	155
SatI	GCNGC	2 cut(s)	126, 129
Sau3AI	GATC	2 cut(s)	180, 345
Sau96I	GGNCC	3 cut(s)	153, 196, 208
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	5 cut(s)	74, 310, 340, 341, 375
SetI	ASST	8 cut(s)	108, 176, 198, 210, 260, 285, 314, 437
SfaNI	GCATC	1 cut(s)	255
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	196, 208
SmaI	CCCGGG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	7 cut(s)	27, 29, 77, 126, 129, 356, 416
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	5 cut(s)	72, 308, 338, 339, 373
StyI	CCWWGG	2 cut(s)	90, 240
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	168, 276, 299
TasI	AATT	1 cut(s)	380
TauI	GCSGC	2 cut(s)	128, 131
TfiI	GAWTC	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	250, 266
TspMI	CCCGGG	1 cut(s)	339
VpaK11BI	GGWCC	2 cut(s)	196, 208
XagI	CCTNNNNNAGG	1 cut(s)	203
XceI	RCATGY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmaI	CCCGGG	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.