Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

122733 .. 123482

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggctattcgtgacattataatatcaatgcagatgagcgctcataagaatgttttgaaactgttgggctgctgcttagagttccatgtaccggctctggtgcacgaatatgcagcgaaaggagttctcaactctgaaggaggttatggggataatgagtccctcccatggaaaactagactacgtattgcgaagcagcttgcaaatgcaattacatatctccatacagccttccccagacccatcattcatagagacctaaagccctcatgtattttcttggaccatgactttacccccaaattatgtgacttctcactttccataaccattcctcctgagcaatcgcatgtcgaagatgttgtgattgggacagtggggtaccttgaccctgcgtaccacaattcttgttatataacagaaaaatctgatgtttatagctttggtgtcatgttacttgttttcttgagtggacgaaaggcttatcgacgagaagaggagcagttgcatatcgagtccattgtgtcatatgtgaaagtacgtgcttctgatgaccagttccatacgattgtggatcctaaaatacttgaggagttaaaaggggaagatgagcaagcacaacagcagcagttgcatgatttcctagcactggcattgttatgcactcaagaggaaagtgaaccaaggccagatatgatcgatgtggccaaacaacttgtacgaattgagaagtctatcaatccttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

249

Amino Acids

28.28

Weight (kDa)

5.54

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	381
AclWI	GGATC	2 cut(s)	569, 582
AcoI	YGGCCR	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	5 cut(s)	90, 383, 398, 540, 720
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	91, 168, 649
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	2 cut(s)	199, 441
AluI	AGCT	2 cut(s)	199, 441
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	249
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	569, 582
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	2 cut(s)	686, 705
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	5 cut(s)	69, 72, 113, 196, 625
Asp718I	GGTACC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	707
BamHI	GGATCC	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	5 cut(s)	56, 59, 125, 208, 637
BccI	CCATC	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	2 cut(s)	177, 644
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	5 cut(s)	70, 73, 114, 197, 626
BlsI	GCNGC	5 cut(s)	71, 74, 115, 198, 627
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	383, 576
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	3 cut(s)	487, 608, 651
Bsa29I	ATCGAT	1 cut(s)	699
BsaAI	YACGTR	2 cut(s)	185, 542
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	167, 683
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 168, 649
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	556, 654
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	167, 683
BseLI	CCNNNNNNNGG	3 cut(s)	91, 168, 649
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	556, 654
BseRI	GAGGAG	2 cut(s)	512, 605
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	5 cut(s)	56, 59, 125, 208, 637
BshFI	GGCC	2 cut(s)	688, 707
BshNI	GGYRCC	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	699
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	145, 385
BslI	CCNNNNNNNGG	3 cut(s)	91, 168, 649
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	145, 385
BsnI	GGCC	2 cut(s)	688, 707
Bso31I	GGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	574, 696
Bsp19I	CCATGG	1 cut(s)	167
BspANI	GGCC	2 cut(s)	688, 707
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	383, 576
BspPI	GGATC	2 cut(s)	569, 582
BspT107I	GGYRCC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	556, 654
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	167, 683
BssMI	GATC	2 cut(s)	574, 696
BssT1I	CCWWGG	2 cut(s)	167, 683
Bst4CI	ACNGT	2 cut(s)	63, 376
Bst6I	CTCTTC	1 cut(s)	489
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstBAI	YACGTR	2 cut(s)	185, 542
BstC8I	GCNNGC	2 cut(s)	201, 615
BstDEI	CTNAG	2 cut(s)	76, 339
BstDSI	CCRYGG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	577, 699
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	574, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNSI	RCATGY	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	105
BstSNI	TACGTA	1 cut(s)	185
BstV1I	GCAGC	5 cut(s)	56, 59, 125, 208, 637
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	688, 707
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	381, 647
Cac8I	GCNNGC	2 cut(s)	201, 615
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	5 cut(s)	89, 382, 397, 539, 719
CspCI	CAANNNNNGTGG	2 cut(s)	389, 424
CviAII	CATG	7 cut(s)	86, 168, 270, 287, 350, 451, 635
CviQI	GTAC	5 cut(s)	89, 382, 397, 539, 719
DdeI	CTNAG	2 cut(s)	76, 339
DpnI	GATC	2 cut(s)	576, 698
DpnII	GATC	2 cut(s)	574, 696
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco105I	TACGTA	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	167, 683
Eco31I	GGTCTC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	167, 683
ErhI	CCWWGG	2 cut(s)	167, 683
FaeI	CATG	7 cut(s)	89, 171, 273, 290, 353, 454, 638
FaqI	GGGAC	2 cut(s)	145, 385
FatI	CATG	7 cut(s)	85, 167, 269, 286, 349, 450, 634
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	5 cut(s)	70, 73, 114, 197, 626
Fsp4HI	GCNGC	5 cut(s)	70, 73, 114, 197, 626
FspBI	CTAG	2 cut(s)	177, 644
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	70, 73, 114, 197, 626
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	688, 707
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	7 cut(s)	89, 171, 273, 290, 353, 454, 638
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	158, 515
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	3 cut(s)	103, 473, 680
Hpy188I	TCNGA	3 cut(s)	136, 430, 550
Hpy188III	TCNNGA	4 cut(s)	11, 338, 466, 668
Hpy8I	GTNNAC	3 cut(s)	103, 473, 680
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	131, 241
HpyCH4III	ACNGT	2 cut(s)	63, 376
HpyCH4IV	ACGT	2 cut(s)	184, 541
HpyCH4V	TGCA	8 cut(s)	31, 103, 113, 203, 209, 508, 634, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	2 cut(s)	76, 339
HpySE526I	ACGT	2 cut(s)	184, 541
Hsp92II	CATG	7 cut(s)	89, 171, 273, 290, 353, 454, 638
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	574, 696
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	8 cut(s)	83, 105, 250, 351, 405, 569, 635, 702
Lsp1109I	GCAGC	5 cut(s)	56, 59, 125, 208, 637
MaeI	CTAG	2 cut(s)	177, 644
MaeII	ACGT	2 cut(s)	184, 541
MaeIII	GTNAC	3 cut(s)	11, 308, 453
MalI	GATC	2 cut(s)	576, 698
MboI	GATC	2 cut(s)	574, 696
MboII	GAAGA	3 cut(s)	368, 506, 617
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	707
MluCI	AATT	4 cut(s)	210, 302, 403, 723
MluNI	TGGCCA	1 cut(s)	707
MlyI	GAGTC	2 cut(s)	167, 524
MnlI	CCTC	7 cut(s)	134, 173, 277, 345, 490, 583, 664
Mox20I	TGGCCA	1 cut(s)	707
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	1 cut(s)	596
MslI	CAYNNNNRTG	3 cut(s)	48, 108, 658
Msp20I	TGGCCA	1 cut(s)	707
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	631
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	2 cut(s)	574, 696
NlaIII	CATG	7 cut(s)	89, 171, 273, 290, 353, 454, 638
NlaIV	GGNNCC	2 cut(s)	383, 576
NmuCI	GTSAC	2 cut(s)	11, 308
NspI	RCATGY	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	71, 74, 115, 198, 627
PleI	GAGTC	2 cut(s)	166, 523
PpsI	GAGTC	2 cut(s)	166, 523
Ppu21I	YACGTR	2 cut(s)	185, 542
PsiI	TTATAA	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	383, 576
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	5 cut(s)	90, 383, 398, 540, 720
RsaNI	GTAC	5 cut(s)	89, 382, 397, 539, 719
RseI	CAYNNNNRTG	3 cut(s)	48, 108, 658
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	5 cut(s)	70, 73, 114, 197, 626
Sau3AI	GATC	2 cut(s)	574, 696
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	167, 524
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	7 cut(s)	145, 187, 201, 261, 387, 443, 544
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	3 cut(s)	48, 108, 658
SmlI	CTYRAG	3 cut(s)	466, 587, 666
SmoI	CTYRAG	3 cut(s)	466, 587, 666
SnaBI	TACGTA	1 cut(s)	185
Sse9I	AATT	4 cut(s)	210, 302, 403, 723
SspMI	CTAG	2 cut(s)	177, 644
StyI	CCWWGG	2 cut(s)	167, 683
TaaI	ACNGT	2 cut(s)	63, 376
TaiI	ACGT	2 cut(s)	187, 544
TaqI	TCGA	4 cut(s)	354, 487, 513, 699
TasI	AATT	4 cut(s)	210, 302, 403, 723
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	2 cut(s)	381, 654
TseFI	GTSAC	2 cut(s)	11, 308
TseI	GCWGC	5 cut(s)	69, 72, 113, 196, 625
Tsp45I	GTSAC	2 cut(s)	11, 308
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	2 cut(s)	381, 654
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	353
XspI	CTAG	2 cut(s)	177, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.