Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

110498 .. 111388

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgagggcaaccaacaattttgatccttctggcgtgatgcaacaagattcatcatacaaaatgttccagggttttcttgagaaccggtcagttatcattaaaaagtacttcactgtgcattggcttgctccggagcaaactaggtctatggcaattcgagacattgtcatttcaatacagatgagcacccacaaaaatgttttgaaactcttgggatgttgcttagagttccctataccagctctggtctatgaatatgcagcgaagggagttctcaactttgaaggaggttatgggaataatgagtccctaccatggaaaactagattgagtattgcaaagcagcttgcaaatgcaattacatatttacatactgcatttcccaggcccattattctcagggatttaaaacccaactgcttttttttagacaatgactatgttcccaaaatctgcaacttcgcaacttccgtaaccattccacctatgcaatctgatgtttatactgatcatttggtatatacacctgggtatcttgaccctacctactcggctaatcaccgcatttcagacaaaactgatgtgtatacttttggtattgtattacttgtatttataacaggacaacaagccatgttaagaaatcaggcaggagaatatgagcacataattccatatgtgaaatcacatgcttctggtggccaagttcaacccattatggatcctaaaatatctatggaggtagggggagctgaaccagtacaccagcaattgcatgatttcctagcactggcattgttatgcactcaagataaaagtgaagaaaggccagatatgatcgatgtggccaaagaactcgtacgaattgagaattttatctcgagtggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

296

Amino Acids

33.42

Weight (kDa)

6.13

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	587
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	1 cut(s)	562
AclWI	GGATC	3 cut(s)	17, 716, 729
AcoI	YGGCCR	2 cut(s)	700, 846
AcsI	RAATTY	1 cut(s)	871
AfaI	GTAC	3 cut(s)	107, 762, 861
AfiI	CCNNNNNNNGG	2 cut(s)	315, 790
AgeI	ACCGGT	1 cut(s)	84
AgsI	TTSAA	4 cut(s)	174, 205, 284, 710
AjnI	CCWGG	3 cut(s)	66, 383, 526
AluBI	AGCT	3 cut(s)	242, 346, 752
AluI	AGCT	3 cut(s)	242, 346, 752
Alw21I	GWGCWC	2 cut(s)	188, 666
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	17, 716, 729
Ama87I	CYCGRG	1 cut(s)	880
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	4 cut(s)	386, 700, 827, 846
ApeKI	GCWGC	2 cut(s)	260, 343
ApoI	RAATTY	1 cut(s)	871
AsiGI	ACCGGT	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	880
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BalI	TGGCCA	2 cut(s)	702, 848
BamHI	GGATCC	1 cut(s)	721
Bbv12I	GWGCWC	2 cut(s)	188, 666
BbvI	GCAGC	2 cut(s)	272, 355
BciT130I	CCWGG	3 cut(s)	68, 385, 528
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	4 cut(s)	141, 324, 785, 889
BisI	GCNGC	2 cut(s)	261, 344
BlsI	GCNGC	2 cut(s)	262, 345
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	68, 385, 528
BmeT110I	CYCGRG	1 cut(s)	880
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	3 cut(s)	68, 385, 528
BmsI	GCATC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	98, 792
Bsa29I	ATCGAT	1 cut(s)	840
BsaJI	CCNNGG	4 cut(s)	67, 314, 383, 527
BsaWI	WCCGGW	2 cut(s)	84, 130
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 790
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	758, 795
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	3 cut(s)	68, 385, 528
BseCI	ATCGAT	1 cut(s)	840
BseDI	CCNNGG	4 cut(s)	67, 314, 383, 527
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	315, 790
BseMII	CTCAG	1 cut(s)	412
BseNI	ACTGG	2 cut(s)	758, 795
BseXI	GCAGC	2 cut(s)	272, 355
BshFI	GGCC	4 cut(s)	388, 702, 829, 848
BshTI	ACCGGT	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	840
BsiHKAI	GWGCWC	2 cut(s)	188, 666
BsiHKCI	CYCGRG	1 cut(s)	880
BsiSI	CCGG	2 cut(s)	85, 131
BsiWI	CGTACG	1 cut(s)	859
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	315, 790
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	388, 702, 829, 848
BsoBI	CYCGRG	1 cut(s)	880
Bsp1286I	GDGCHC	2 cut(s)	188, 666
Bsp13I	TCCGGA	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	22, 508, 721, 837
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	1 cut(s)	562
BspANI	GGCC	4 cut(s)	388, 702, 829, 848
BspCNI	CTCAG	1 cut(s)	411
BspDI	ATCGAT	1 cut(s)	840
BspEI	TCCGGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	723
BspPI	GGATC	3 cut(s)	17, 716, 729
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	758, 795
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	4 cut(s)	67, 314, 383, 527
BssMI	GATC	4 cut(s)	22, 508, 721, 837
BssNAI	GTATAC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	314
Bst1107I	GTATAC	1 cut(s)	588
Bst2UI	CCWGG	3 cut(s)	68, 385, 528
Bst4CI	ACNGT	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	126, 348
BstDEI	CTNAG	2 cut(s)	223, 398
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	4 cut(s)	25, 511, 724, 840
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	4 cut(s)	22, 508, 721, 837
BstNI	CCWGG	3 cut(s)	68, 385, 528
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	3 cut(s)	66, 383, 526
BstV1I	GCAGC	2 cut(s)	272, 355
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BstZ17I	GTATAC	1 cut(s)	588
Bsu15I	ATCGAT	1 cut(s)	840
BsuRI	GGCC	4 cut(s)	388, 702, 829, 848
BsuTUI	ATCGAT	1 cut(s)	840
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	111, 788
Cac8I	GCNNGC	2 cut(s)	126, 348
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	840
Csp6I	GTAC	3 cut(s)	106, 761, 860
CspAI	ACCGGT	1 cut(s)	84
CviAII	CATG	4 cut(s)	315, 634, 689, 776
CviQI	GTAC	3 cut(s)	106, 761, 860
DdeI	CTNAG	2 cut(s)	223, 398
DpnI	GATC	4 cut(s)	24, 510, 723, 839
DpnII	GATC	4 cut(s)	22, 508, 721, 837
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	2 cut(s)	700, 846
Eco130I	CCWWGG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	880
EcoRII	CCWGG	3 cut(s)	66, 383, 526
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	4 cut(s)	318, 637, 692, 779
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	314, 633, 688, 775
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	2 cut(s)	261, 344
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	261, 344
FspBI	CTAG	4 cut(s)	141, 324, 785, 889
GluI	GCNGC	2 cut(s)	261, 344
HaeIII	GGCC	4 cut(s)	388, 702, 829, 848
HapII	CCGG	2 cut(s)	85, 131
Hin1II	CATG	4 cut(s)	318, 637, 692, 779
HinfI	GANTC	2 cut(s)	47, 305
HpaII	CCGG	2 cut(s)	85, 131
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	588, 763
Hpy188I	TCNGA	2 cut(s)	496, 571
Hpy188III	TCNNGA	6 cut(s)	77, 131, 158, 536, 809, 880
Hpy8I	GTNNAC	2 cut(s)	588, 763
HpyAV	CCTTC	3 cut(s)	36, 259, 278
HpyCH4III	ACNGT	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	223, 398
Hsp92II	CATG	4 cut(s)	318, 637, 692, 779
Kpn2I	TCCGGA	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	22, 508, 721, 837
LmnI	GCTCC	3 cut(s)	133, 133, 749
Lsp1109I	GCAGC	2 cut(s)	272, 355
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	4 cut(s)	141, 324, 785, 889
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	4 cut(s)	24, 510, 723, 839
MboI	GATC	4 cut(s)	22, 508, 721, 837
MboII	GAAGA	1 cut(s)	833
MfeI	CAATTG	1 cut(s)	770
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	2 cut(s)	188, 666
MlsI	TGGCCA	2 cut(s)	702, 848
MluCI	AATT	7 cut(s)	16, 153, 357, 669, 770, 864, 871
MluNI	TGGCCA	2 cut(s)	702, 848
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	281, 733
Mox20I	TGGCCA	2 cut(s)	702, 848
MroI	TCCGGA	1 cut(s)	130
MscI	TGGCCA	2 cut(s)	702, 848
MseI	TTAA	3 cut(s)	99, 407, 638
MslI	CAYNNNNRTG	2 cut(s)	195, 799
Msp20I	TGGCCA	2 cut(s)	702, 848
MspI	CCGG	2 cut(s)	85, 131
MspR9I	CCNGG	3 cut(s)	68, 385, 528
MunI	CAATTG	1 cut(s)	770
MvaI	CCWGG	3 cut(s)	68, 385, 528
NcoI	CCATGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	4 cut(s)	22, 508, 721, 837
NlaIII	CATG	4 cut(s)	318, 637, 692, 779
NlaIV	GGNNCC	1 cut(s)	723
NmeAIII	GCCGAG	1 cut(s)	530
NspI	RCATGY	1 cut(s)	692
PaeR7I	CTCGAG	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	47
Pfl23II	CGTACG	1 cut(s)	859
PflFI	GACNNNGTC	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	262, 345
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	617
Psp6I	CCWGG	3 cut(s)	66, 383, 526
PspGI	CCWGG	3 cut(s)	66, 383, 526
PspLI	CGTACG	1 cut(s)	859
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	721
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	3 cut(s)	107, 762, 861
RsaNI	GTAC	3 cut(s)	106, 761, 860
RseI	CAYNNNNRTG	2 cut(s)	195, 799
SaqAI	TTAA	3 cut(s)	99, 407, 638
SatI	GCNGC	2 cut(s)	261, 344
Sau3AI	GATC	4 cut(s)	22, 508, 721, 837
Sau96I	GGNCC	1 cut(s)	387
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	3 cut(s)	68, 385, 528
SduI	GDGCHC	2 cut(s)	188, 666
SetI	ASST	9 cut(s)	146, 244, 292, 348, 487, 529, 548, 744, 754
SfaNI	GCATC	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	880
SlaI	CTCGAG	1 cut(s)	880
SmiMI	CAYNNNNRTG	2 cut(s)	195, 799
SmlI	CTYRAG	3 cut(s)	77, 807, 880
SmoI	CTYRAG	3 cut(s)	77, 807, 880
Sse9I	AATT	7 cut(s)	16, 153, 357, 669, 770, 864, 871
SsiI	CCGC	1 cut(s)	562
SspMI	CTAG	4 cut(s)	141, 324, 785, 889
StyD4I	CCNGG	3 cut(s)	66, 383, 526
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	157, 840, 881
TasI	AATT	7 cut(s)	16, 153, 357, 669, 770, 864, 871
TatI	WGTACW	2 cut(s)	105, 760
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	99, 407, 638
Tru9I	TTAA	3 cut(s)	99, 407, 638
TscAI	CASTG	2 cut(s)	118, 795
TseI	GCWGC	2 cut(s)	260, 343
TspDTI	ATGAA	2 cut(s)	39, 267
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	2 cut(s)	118, 795
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	871
XceI	RCATGY	1 cut(s)	692
XhoI	CTCGAG	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	4 cut(s)	141, 324, 785, 889
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.