Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

103410 .. 104798

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgccatccaatgtcttgtactctttgcttccatgtttgaaaaaggagggaaaatatgctaatagctcattcttggataatggaagcaaattattagaggatctcgttgcttcttgtgatggcaaatccaatccaatacgccatttctctgctgatgaactcatcagggcaaccaataacttccatccgtcttgccttatacaagagtgtcgtccacatgcatttaggggttctctggacaaccgattggttataattaagaccatggaggcagcagatgaagccagggatgaagctattcgtaacatcgtaatttcagtgcagatgagcactcataagaatgttttgaaattgttgggctgctgcttagagttcccattaccagttttggcgcatgaatatgcaacactaggagttcttaacaagaaaggaggtttgggggatgatgaagctctgccatggaaaactagaatacgaatcgcaaagcaggttgctaatgctattacttatctccatacagccttccctagacccatcattcatagggatctaaggcctgattgtattctcttggatgaggactttgttcccaaattatgtgacttctcatactccataacgattcctcctaagcaatcacatgtcaaagatatcgtgaaaggcacagtagggtatctcgaccctgtgtatgtcaagtctgcatacatttcagaaaaaactgatgtttatagctttggtgttattttacttgttttcttgacgggacgaaaacccttcaaagaaaatcagagaggatattttgaatatgaggacttcattccatatttgaagttacaattagcatgtgagggccaaattcagacaattgtggatcctaaaatccttgaggagttgggggaaggtgatgagcaagcacaacagcagttgcatgatttcttatcactggcattgtcatgtacccaactagaaagtgaaggaaggccagatatgatcgatgtggcaaaagaactcgtccgaattgagaaatctatcttgccatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

347

Amino Acids

39.04

Weight (kDa)

5.77

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	478
AclWI	GGATC	4 cut(s)	108, 555, 866, 879
AcsI	RAATTY	1 cut(s)	855
AfaI	GTAC	2 cut(s)	20, 958
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	5 cut(s)	40, 349, 778, 803, 829
AjnI	CCWGG	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	4 cut(s)	66, 296, 452, 732
AluI	AGCT	4 cut(s)	66, 296, 452, 732
Alw21I	GWGCWC	1 cut(s)	332
AlwI	GGATC	4 cut(s)	108, 555, 866, 879
AoxI	GGCC	3 cut(s)	554, 850, 980
ApeKI	GCWGC	3 cut(s)	272, 360, 363
ApoI	RAATTY	1 cut(s)	855
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	850
AsuHPI	GGTGA	1 cut(s)	914
BamHI	GGATCC	1 cut(s)	871
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	284, 347, 350
BccI	CCATC	4 cut(s)	13, 113, 192, 542
BciT130I	CCWGG	1 cut(s)	286
BfaI	CTAG	5 cut(s)	410, 468, 528, 965, 1042
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	3 cut(s)	273, 361, 364
BlsI	GCNGC	3 cut(s)	274, 362, 365
Bme1390I	CCNGG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	850
BmiI	GGNNCC	1 cut(s)	873
BmrFI	CCNGG	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	905
Bsa29I	ATCGAT	1 cut(s)	993
BsaJI	CCNNGG	3 cut(s)	264, 285, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bse1I	ACTGG	2 cut(s)	383, 948
BseBI	CCWGG	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	993
BseDI	CCNNGG	3 cut(s)	264, 285, 458
BseGI	GGATG	6 cut(s)	5, 184, 295, 448, 580, 1037
BseNI	ACTGG	2 cut(s)	383, 948
BseRI	GAGGAG	1 cut(s)	902
BseXI	GCAGC	3 cut(s)	284, 347, 350
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	556, 852, 982
BshVI	ATCGAT	1 cut(s)	993
BsiHKAI	GWGCWC	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	777
BsmFI	GGGAC	1 cut(s)	777
BsnI	GGCC	3 cut(s)	556, 852, 982
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	100, 547, 871, 990
Bsp19I	CCATGG	2 cut(s)	264, 458
BspANI	GGCC	3 cut(s)	556, 852, 982
BspDI	ATCGAT	1 cut(s)	993
BspLI	GGNNCC	1 cut(s)	873
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	4 cut(s)	108, 555, 866, 879
BsrI	ACTGG	2 cut(s)	383, 948
BssECI	CCNNGG	3 cut(s)	264, 285, 458
BssMI	GATC	4 cut(s)	100, 547, 871, 990
BssT1I	CCWWGG	2 cut(s)	264, 458
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	667
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	3 cut(s)	367, 551, 630
BstDSI	CCRYGG	2 cut(s)	264, 458
BstF5I	GGATG	6 cut(s)	5, 184, 295, 448, 580, 1037
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	4 cut(s)	103, 550, 874, 993
BstMBI	GATC	4 cut(s)	100, 547, 871, 990
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	3 cut(s)	221, 644, 846
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	284, 347, 350
BstX2I	RGATCY	3 cut(s)	100, 547, 871
BstYI	RGATCY	3 cut(s)	100, 547, 871
Bsu15I	ATCGAT	1 cut(s)	993
BsuRI	GGCC	3 cut(s)	556, 852, 982
BsuTUI	ATCGAT	1 cut(s)	993
BtgI	CCRYGG	2 cut(s)	264, 458
BtsCI	GGATG	6 cut(s)	5, 184, 295, 448, 580, 1037
BtsIMutI	CAGTG	2 cut(s)	324, 941
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	912
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	850
ClaI	ATCGAT	1 cut(s)	993
Csp6I	GTAC	2 cut(s)	19, 957
CviAII	CATG	9 cut(s)	33, 218, 265, 395, 459, 641, 843, 929, 954
CviQI	GTAC	2 cut(s)	19, 957
DdeI	CTNAG	3 cut(s)	367, 551, 630
DpnI	GATC	4 cut(s)	102, 549, 873, 992
DpnII	GATC	4 cut(s)	100, 547, 871, 990
Eco130I	CCWWGG	2 cut(s)	264, 458
Eco147I	AGGCCT	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	264, 458
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	264, 458
FaeI	CATG	9 cut(s)	36, 221, 268, 398, 462, 644, 846, 932, 957
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	9 cut(s)	32, 217, 264, 394, 458, 640, 842, 928, 953
Fnu4HI	GCNGC	3 cut(s)	273, 361, 364
FokI	GGATG	5 cut(s)	171, 302, 455, 587, 1024
Fsp4HI	GCNGC	3 cut(s)	273, 361, 364
FspBI	CTAG	5 cut(s)	410, 468, 528, 965, 1042
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	3 cut(s)	273, 361, 364
HaeIII	GGCC	3 cut(s)	556, 852, 982
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	9 cut(s)	36, 221, 268, 398, 462, 644, 846, 932, 957
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	2 cut(s)	477, 622
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	4 cut(s)	712, 789, 861, 1016
Hpy188III	TCNNGA	4 cut(s)	236, 655, 677, 757
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	5 cut(s)	532, 784, 893, 968, 972
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4V	TGCA	5 cut(s)	221, 322, 404, 701, 928
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	3 cut(s)	367, 551, 630
Hsp92II	CATG	9 cut(s)	36, 221, 268, 398, 462, 644, 846, 932, 957
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	4 cut(s)	100, 547, 871, 990
Lsp1109I	GCAGC	3 cut(s)	284, 347, 350
MaeI	CTAG	5 cut(s)	410, 468, 528, 965, 1042
MaeIII	GTNAC	3 cut(s)	302, 599, 831
MalI	GATC	4 cut(s)	102, 549, 873, 992
MboI	GATC	4 cut(s)	100, 547, 871, 990
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	3 cut(s)	100, 547, 871
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	9 cut(s)	89, 255, 312, 350, 593, 836, 855, 864, 1017
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	258, 420
MslI	CAYNNNNRTG	3 cut(s)	339, 399, 952
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	1 cut(s)	864
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	281
NcoI	CCATGG	2 cut(s)	264, 458
NdeII	GATC	4 cut(s)	100, 547, 871, 990
NlaIII	CATG	9 cut(s)	36, 221, 268, 398, 462, 644, 846, 932, 957
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	1 cut(s)	599
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	3 cut(s)	221, 644, 846
PceI	AGGCCT	1 cut(s)	556
PciI	ACATGT	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	477, 622
PkrI	GCNGC	3 cut(s)	274, 362, 365
PscI	ACATGT	1 cut(s)	640
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	873
PspPI	GGNCC	1 cut(s)	850
PsuI	RGATCY	3 cut(s)	100, 547, 871
RsaI	GTAC	2 cut(s)	20, 958
RsaNI	GTAC	2 cut(s)	19, 957
RseI	CAYNNNNRTG	3 cut(s)	339, 399, 952
SaqAI	TTAA	2 cut(s)	258, 420
SatI	GCNGC	3 cut(s)	273, 361, 364
Sau3AI	GATC	4 cut(s)	100, 547, 871, 990
Sau96I	GGNCC	1 cut(s)	850
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	7 cut(s)	68, 298, 436, 454, 492, 734, 904
SmiMI	CAYNNNNRTG	3 cut(s)	339, 399, 952
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	9 cut(s)	89, 255, 312, 350, 593, 836, 855, 864, 1017
SseBI	AGGCCT	1 cut(s)	556
SspMI	CTAG	5 cut(s)	410, 468, 528, 965, 1042
StuI	AGGCCT	1 cut(s)	556
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	2 cut(s)	264, 458
TaaI	ACNGT	1 cut(s)	667
TaqI	TCGA	2 cut(s)	678, 993
TasI	AATT	9 cut(s)	89, 255, 312, 350, 593, 836, 855, 864, 1017
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	477, 622
Tru1I	TTAA	2 cut(s)	258, 420
Tru9I	TTAA	2 cut(s)	258, 420
TscAI	CASTG	2 cut(s)	324, 948
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	3 cut(s)	272, 360, 363
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	7 cut(s)	171, 294, 306, 411, 462, 530, 805
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	324, 948
XapI	RAATTY	1 cut(s)	855
XceI	RCATGY	3 cut(s)	221, 644, 846
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	5 cut(s)	410, 468, 528, 965, 1042
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.