RLG00000004197
NAC Family

Inactive serine threonine-protein kinase At1g67470-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
57141043 .. 57142034
992 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004197

Sequence Viewer

Length: 744 bp
ATGTCATCCAAAAGCTTGTTTTCACTGCTTCCATGTTTAAGGACAGAGGAGAGAGATACTGGTATTGTTTCATCATCAATATTCTTGGAGAATGGAAGCAAATTATTAGAAGATCTCATTGCTTCATGTGATGGAAAGTCTAATCCAATTCGTTGTTATTCTCTTGATGAACTCACAAGGGCAACCAACAACTTTGATCCTTCTTGCATTATACAAGACTTTTCGGCTGAATTTCGTTACCAAATGTTTAATGGTTTTCTAGATGACCGATCAATTACCATTAAGAAGTTCATGAGTACTGCCCAAGTTGGGTATGAAGCTAGGTCTCTGGCCATTCGTGACATTATAATAACAATGCAGATGAGCAGCCATAACAATGTCTTAAAGCTGTTGGGCTGCTGCTTAGAGCTCCCTATACCGGCTCTAGTGCTTGAATGTGCAAGTGAAGGAGTTCTAACTAGTGAAGCGGGTTGTGGGGCAAATCAATCCCTACCGTGGAATATTAGGCTGCGCATTGCAAAGCAACTTGCAAATGCAATTACATATCTGCATACTGCCTTCTCCCGGCCAATTATTCATAGAGATATACGAGCCTCCTGTGTTTTCTTGGGCAATGATTATATTCCGAAGCTTTGCAACTTCTCACTTTCCATAACCATTCCTCCTATGCAATCGCATGTTATAGATGAGCCAAAAGGGACATATGGGCCAAAAAGTTGTGCTTCAATATCAAGGAGAATTTGA

Protein Analysis

248

Amino Acids

27.4

Weight (kDa)

7.49

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 91 - 225 6.5e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 110 - 223 7.4e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
Acc16I TGCGCA 1 cut(s) 512
AciI CCGC 1 cut(s) 467
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 2 cut(s) 330, 566
AcsI RAATTY 2 cut(s) 230, 738
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 4 cut(s) 309, 418, 495, 564
AgsI TTSAA 2 cut(s) 434, 726
AhlI ACTAGT 1 cut(s) 458
AluBI AGCT 5 cut(s) 15, 320, 388, 409, 631
AluI AGCT 5 cut(s) 15, 320, 388, 409, 631
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 191
AoxI GGCC 3 cut(s) 330, 566, 707
ApeKI GCWGC 4 cut(s) 366, 396, 399, 508
ApoI RAATTY 2 cut(s) 230, 738
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 1 cut(s) 565
BalI TGGCCA 1 cut(s) 332
BanII GRGCYC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 4 cut(s) 378, 383, 386, 495
BccI CCATC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 1 cut(s) 330
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 4 cut(s) 260, 321, 425, 459
BglII AGATCT 1 cut(s) 112
BisI GCNGC 4 cut(s) 367, 397, 400, 509
BlsI GCNGC 4 cut(s) 368, 398, 401, 510
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 707
BmrFI CCNGG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 565
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 418, 495, 564
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 3 cut(s) 117, 513, 619
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 4 cut(s) 309, 418, 495, 564
BseMI GCAATG 3 cut(s) 117, 513, 619
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 4 cut(s) 378, 383, 386, 495
BshFI GGCC 3 cut(s) 332, 568, 709
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 419, 565
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 4 cut(s) 309, 418, 495, 564
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 712
BsnI GGCC 3 cut(s) 332, 568, 709
Bso31I GGTCTC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 3 cut(s) 112, 196, 269
BspACI CCGC 1 cut(s) 467
BspANI GGCC 3 cut(s) 332, 568, 709
BspHI TCATGA 1 cut(s) 291
BspPI GGATC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 330
BsrDI GCAATG 3 cut(s) 117, 513, 619
BsrFI RCCGGY 1 cut(s) 418
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 3 cut(s) 112, 196, 269
Bst4CI ACNGT 1 cut(s) 495
BstDEI CTNAG 1 cut(s) 403
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 5
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 3 cut(s) 115, 199, 272
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 3 cut(s) 112, 196, 269
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 563
BstV1I GCAGC 4 cut(s) 378, 383, 386, 495
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 3 cut(s) 332, 568, 709
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 291
CfoI GCGC 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 707
Csp6I GTAC 1 cut(s) 297
CviAII CATG 4 cut(s) 33, 126, 292, 677
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 1 cut(s) 403
DpnI GATC 3 cut(s) 114, 198, 271
DpnII GATC 3 cut(s) 112, 196, 269
EaeI YGGCCR 2 cut(s) 330, 566
Ecl136II GAGCTC 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 411
FaeI CATG 4 cut(s) 36, 129, 295, 680
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 1 cut(s) 712
FatI CATG 4 cut(s) 32, 125, 291, 676
FauI CCCGC 1 cut(s) 460
FauNDI CATATG 1 cut(s) 703
Fnu4HI GCNGC 4 cut(s) 367, 397, 400, 509
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 4 cut(s) 367, 397, 400, 509
FspBI CTAG 4 cut(s) 260, 321, 425, 459
FspI TGCGCA 1 cut(s) 512
GlaI GCGC 1 cut(s) 512
GluI GCNGC 4 cut(s) 367, 397, 400, 509
HaeIII GGCC 3 cut(s) 332, 568, 709
HapII CCGG 2 cut(s) 419, 565
HhaI GCGC 1 cut(s) 513
Hin1II CATG 4 cut(s) 36, 129, 295, 680
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HindIII AAGCTT 2 cut(s) 13, 629
HpaII CCGG 2 cut(s) 419, 565
Hpy188I TCNGA 1 cut(s) 627
Hpy188III TCNNGA 4 cut(s) 164, 260, 292, 338
HpyAV CCTTC 3 cut(s) 210, 440, 568
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4V TGCA 9 cut(s) 207, 358, 440, 518, 530, 536, 550, 636, 670
HpyF3I CTNAG 1 cut(s) 403
Hsp92II CATG 4 cut(s) 36, 129, 295, 680
HspAI GCGC 1 cut(s) 511
Kzo9I GATC 3 cut(s) 112, 196, 269
LmnI GCTCC 1 cut(s) 414
LpnPI CCDG 5 cut(s) 45, 314, 432, 578, 610
Lsp1109I GCAGC 4 cut(s) 378, 383, 386, 495
MaeI CTAG 4 cut(s) 260, 321, 425, 459
MaeIII GTNAC 2 cut(s) 236, 338
MalI GATC 3 cut(s) 114, 198, 271
MboI GATC 3 cut(s) 112, 196, 269
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 411
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 7 cut(s) 101, 147, 230, 273, 537, 570, 738
MluNI TGGCCA 1 cut(s) 332
MnlI CCTC 3 cut(s) 40, 604, 672
Mox20I TGGCCA 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 450
MscI TGGCCA 1 cut(s) 332
MseI TTAA 4 cut(s) 38, 249, 282, 383
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 332
MspI CCGG 2 cut(s) 419, 565
MspR9I CCNGG 1 cut(s) 565
NciI CCSGG 1 cut(s) 565
NdeI CATATG 1 cut(s) 703
NdeII GATC 3 cut(s) 112, 196, 269
NlaIII CATG 4 cut(s) 36, 129, 295, 680
NmuCI GTSAC 1 cut(s) 338
NsbI TGCGCA 1 cut(s) 512
NspI RCATGY 1 cut(s) 680
PagI TCATGA 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 450
PkrI GCNGC 4 cut(s) 368, 398, 401, 510
PsiI TTATAA 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 707
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 375
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 4 cut(s) 38, 249, 282, 383
SatI GCNGC 4 cut(s) 367, 397, 400, 509
Sau3AI GATC 3 cut(s) 112, 196, 269
Sau96I GGNCC 1 cut(s) 707
ScaI AGTACT 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 565
SduI GDGCHC 1 cut(s) 411
SetI ASST 6 cut(s) 17, 322, 326, 390, 411, 633
SmiMI CAYNNNNRTG 1 cut(s) 375
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 7 cut(s) 101, 147, 230, 273, 537, 570, 738
SsiI CCGC 1 cut(s) 467
SspI AATATT 2 cut(s) 81, 502
SspMI CTAG 4 cut(s) 260, 321, 425, 459
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 495
TaqII GACCGA 1 cut(s) 282
TasI AATT 7 cut(s) 101, 147, 230, 273, 537, 570, 738
TatI WGTACW 1 cut(s) 296
Tru1I TTAA 4 cut(s) 38, 249, 282, 383
Tru9I TTAA 4 cut(s) 38, 249, 282, 383
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 4 cut(s) 366, 396, 399, 508
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 6 cut(s) 60, 114, 183, 280, 330, 566
TspRI CASTG 1 cut(s) 30
XapI RAATTY 2 cut(s) 230, 738
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 1 cut(s) 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 4 cut(s) 260, 321, 425, 459
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.