Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

12527698 .. 12528357

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCATCCAAAAGCTTGTTTTCACTGCTTCCATGTTTAAGGACAAAGGAGAGAGATACTGGTATTGTATCATCATCAATGTTCTTGGAGAATGGAAGCAAATTATTAGAAGATCTCATTGCTTCATGTGATGGAAAGTCTAATCCAATTCGTTGTTATTCTCTTGATGAACTCACAAGGGCAACCAACAACTTTGATCCTTCTTGCATTATACAAGACTTTTCGGCGGAATTTCGTTACCAAATGTTTAATGGTTTTCTAGATGACCGATCAATTACCATTAAGAAGTTTATGAGTACTGCCCAAGTTGGGTATGAAGCTAGGTCTCTGGCCATTCGTGACATTATAATAACAATGCAGATGAGCAGTCATAACAATGTCTTAAAGCTGTTGGGCTGCTGCTTAGAGCTCCCTATACCGGCTCTAGTGCTTAATGTGCAAGTGAAGGAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

16.98

Weight (kDa)

5.82

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	230, 449
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	309, 418
AluBI	AGCT	4 cut(s)	15, 320, 388, 409
AluI	AGCT	4 cut(s)	15, 320, 388, 409
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	396, 399
ApoI	RAATTY	2 cut(s)	230, 449
Asp700I	GAANNNNTTC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	383, 386
BccI	CCATC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	3 cut(s)	260, 321, 425
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	2 cut(s)	397, 400
BlsI	GCNGC	2 cut(s)	398, 401
BmcAI	AGTACT	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 418
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	309, 418
BseMI	GCAATG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	383, 386
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	309, 418
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	112, 196, 269
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	418
BssMI	GATC	3 cut(s)	112, 196, 269
BstDEI	CTNAG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	3 cut(s)	115, 199, 272
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	3 cut(s)	112, 196, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	383, 386
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	33, 126
CviJI	RGCY	7 cut(s)	15, 320, 332, 388, 396, 409, 422
CviKI_1	RGCY	7 cut(s)	15, 320, 332, 388, 396, 409, 422
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	3 cut(s)	114, 198, 271
DpnII	GATC	3 cut(s)	112, 196, 269
EaeI	YGGCCR	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	2 cut(s)	36, 129
FaiI	YATR	8 cut(s)	34, 127, 212, 293, 315, 347, 372, 416
FatI	CATG	2 cut(s)	32, 125
Fnu4HI	GCNGC	2 cut(s)	397, 400
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	2 cut(s)	397, 400
FspBI	CTAG	3 cut(s)	260, 321, 425
GluI	GCNGC	2 cut(s)	397, 400
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	2 cut(s)	36, 129
HindIII	AAGCTT	1 cut(s)	13
HpaII	CCGG	1 cut(s)	419
Hpy188III	TCNNGA	3 cut(s)	164, 260, 338
HpyAV	CCTTC	2 cut(s)	210, 439
HpyCH4V	TGCA	3 cut(s)	207, 358, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	36, 129
Kzo9I	GATC	3 cut(s)	112, 196, 269
LmnI	GCTCC	1 cut(s)	414
LpnPI	CCDG	3 cut(s)	45, 314, 432
Lsp1109I	GCAGC	2 cut(s)	383, 386
MaeI	CTAG	3 cut(s)	260, 321, 425
MaeIII	GTNAC	2 cut(s)	236, 338
MalI	GATC	3 cut(s)	114, 198, 271
MboI	GATC	3 cut(s)	112, 196, 269
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	411
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	5 cut(s)	101, 147, 230, 273, 449
MluNI	TGGCCA	1 cut(s)	332
Mox20I	TGGCCA	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	5 cut(s)	38, 249, 282, 383, 432
MslI	CAYNNNNRTG	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	332
MspI	CCGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	3 cut(s)	112, 196, 269
NlaIII	CATG	2 cut(s)	36, 129
NmuCI	GTSAC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	398, 401
PsiI	TTATAA	1 cut(s)	347
Psp124BI	GAGCTC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	38, 249, 282, 383, 432
SatI	GCNGC	2 cut(s)	397, 400
Sau3AI	GATC	3 cut(s)	112, 196, 269
ScaI	AGTACT	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	5 cut(s)	17, 322, 326, 390, 411
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	101, 147, 230, 273, 449
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	3 cut(s)	260, 321, 425
SstI	GAGCTC	1 cut(s)	411
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	5 cut(s)	101, 147, 230, 273, 449
TatI	WGTACW	1 cut(s)	296
Tru1I	TTAA	5 cut(s)	38, 249, 282, 383, 432
Tru9I	TTAA	5 cut(s)	38, 249, 282, 383, 432
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	396, 399
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	3 cut(s)	114, 183, 330
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	2 cut(s)	230, 449
XbaI	TCTAGA	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	3 cut(s)	260, 321, 425
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.