RchiOBHm_Chr6g0248551

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
4540204 .. 4542335
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22278

Sequence Viewer

Length: 1026 bp
ATGCTATCTAAACTCTTGTACTCTTTGCTTCCATGTTTGAGAATGGAGGAAAAATATGCTTTGGATAATGGAAGCAAATTATTAGAGGATCTGATTGCTTCTTGTGATGGAAAATCTAATCCCATTCGCCATTACTCTGCTGATGAACTTGTCAGGGCAACTAACAACTTCCATCCTTCTTGTCGTATATCTGGTGGATACGATTTATATAAGGGTTTTCTAGACAACCGATTGGTTATGATTAATTGTGTGGAAACTTCAACTTTGCATGAGCGCTGGAGAGATATGGCTATTCGTGACATTATAATATCGATGCAGATGAGCGCTCATAAGAATGTTTTGAAACTGTTGGGCTGCTGCTTAGAGTTCCATGTACCGGCTCTGGTGCACGAATATGCAGCGAAAGGAGTTCTCAACTCTGAAGGAGGTTATGGGGATAATGAGTCCCTCCCATGGAAAACTAGACTACGTATTGCGAAGCAGCTTGCAAATGCAATAACATATCTCCATACAGCCTTCCCCAGACCCATCATTCATAGAAACCTAAAGCCCTCATGTATTTTCTTGGACCATGACTTTTCCCCCAAATTATGTGACTTCTCACGTTCCATGACCATTCCTCCTGAGCAATCACATGTCATAGAAAGCGCAAGGTCTGGAACGGTTGGGTACCTTGAACCTGCGTTTGGTTACGTTACAGAAAAGACTGATGTTTATAGCTTTGGTGCCATTTTACTTGTTTTCTTGAGTGGACAAATACCTTATCAAGTATATCAAGCAGGAGAAGATTTCGACCTTGCGTCATATGCGAAATTACATGCCTCTGATGACCAGTTCCATACGATTGTGGATCCTAAAATACTTGAGGAGTTAAAAGGAGAAGATGAGCAAGCACAACAGCAGCAGTTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAATTCGAAAGTGAACGAAGGCCAGATATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAAGTCTATCAATCCTTGTTAG

Protein Analysis

341

Amino Acids

38.63

Weight (kDa)

5.72

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 75 - 265 9.8e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 78 - 331 1.4e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 688
Acc65I GGTACC 1 cut(s) 669
AccB1I GGYRCC 2 cut(s) 669, 725
AclWI GGATC 3 cut(s) 96, 845, 858
AcoI YGGCCR 1 cut(s) 981
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 4 cut(s) 20, 375, 671, 996
AfeI AGCGCT 2 cut(s) 275, 325
AfiI CCNNNNNNNGG 4 cut(s) 376, 453, 686, 925
AflIII ACRYGT 1 cut(s) 634
AgsI TTSAA 3 cut(s) 261, 343, 677
AhdI GACNNNNNGTC 1 cut(s) 799
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AluBI AGCT 2 cut(s) 484, 720
AluI AGCT 2 cut(s) 484, 720
Alw21I GWGCWC 1 cut(s) 390
Alw44I GTGCAC 1 cut(s) 386
AlwI GGATC 3 cut(s) 96, 845, 858
Aor51HI AGCGCT 2 cut(s) 275, 325
AoxI GGCC 2 cut(s) 962, 981
ApaLI GTGCAC 1 cut(s) 386
ApeKI GCWGC 5 cut(s) 354, 357, 398, 481, 901
AseI ATTAAT 1 cut(s) 243
Asp718I GGTACC 1 cut(s) 669
AspLEI GCGC 3 cut(s) 276, 326, 650
AspS9I GGNCC 1 cut(s) 568
AsuII TTCGAA 1 cut(s) 948
AvaII GGWCC 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 390
BalI TGGCCA 1 cut(s) 983
BamHI GGATCC 1 cut(s) 850
BanI GGYRCC 2 cut(s) 669, 725
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 5 cut(s) 341, 344, 410, 493, 913
BccI CCATC 3 cut(s) 101, 180, 536
BcgI CGANNNNNNTGC 2 cut(s) 928, 962
BciVI GTATCC 1 cut(s) 191
BfaI CTAG 3 cut(s) 221, 462, 920
BfoI RGCGCY 2 cut(s) 277, 327
BfuAI ACCTGC 1 cut(s) 688
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 5 cut(s) 355, 358, 399, 482, 902
BlsI GCNGC 5 cut(s) 356, 359, 400, 483, 903
Bme18I GGWCC 1 cut(s) 568
BmeRI GACNNNNNGTC 1 cut(s) 799
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 3 cut(s) 671, 727, 852
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 948
BpuEI CTTGAG 2 cut(s) 766, 884
Bsa29I ATCGAT 2 cut(s) 311, 975
BsaAI YACGTR 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 4 cut(s) 376, 453, 686, 925
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 832, 930
BseCI ATCGAT 2 cut(s) 311, 975
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 4 cut(s) 376, 453, 686, 925
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 2 cut(s) 832, 930
BseRI GAGGAG 1 cut(s) 881
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 5 cut(s) 341, 344, 410, 493, 913
BshFI GGCC 2 cut(s) 964, 983
BshNI GGYRCC 2 cut(s) 669, 725
BshVI ATCGAT 2 cut(s) 311, 975
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 4 cut(s) 376, 453, 686, 925
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 2 cut(s) 964, 983
Bsp119I TTCGAA 1 cut(s) 948
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 88, 850, 972
Bsp19I CCATGG 1 cut(s) 452
BspANI GGCC 2 cut(s) 964, 983
BspCNI CTCAG 1 cut(s) 616
BspDI ATCGAT 2 cut(s) 311, 975
BspLI GGNNCC 3 cut(s) 671, 727, 852
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 3 cut(s) 96, 845, 858
BspT104I TTCGAA 1 cut(s) 948
BspT107I GGYRCC 2 cut(s) 669, 725
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 2 cut(s) 832, 930
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 3 cut(s) 88, 850, 972
BssT1I CCWWGG 1 cut(s) 452
Bst4CI ACNGT 2 cut(s) 348, 664
BstAPI GCANNNNNTGC 1 cut(s) 907
BstBAI YACGTR 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 948
BstC8I GCNNGC 2 cut(s) 486, 891
BstDEI CTNAG 2 cut(s) 361, 624
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 2 cut(s) 277, 327
BstHHI GCGC 3 cut(s) 276, 326, 650
BstKTI GATC 3 cut(s) 91, 853, 975
BstMBI GATC 3 cut(s) 88, 850, 972
BstMWI GCNNNNNNNGC 2 cut(s) 806, 907
BstNSI RCATGY 2 cut(s) 638, 821
BstSLI GKGCMC 1 cut(s) 390
BstSNI TACGTA 1 cut(s) 470
BstV1I GCAGC 5 cut(s) 341, 344, 410, 493, 913
BstX2I RGATCY 2 cut(s) 88, 850
BstYI RGATCY 2 cut(s) 88, 850
Bsu15I ATCGAT 2 cut(s) 311, 975
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 964, 983
BsuTUI ATCGAT 2 cut(s) 311, 975
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 923
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 486, 891
CfoI GCGC 3 cut(s) 276, 326, 650
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 568
ClaI ATCGAT 2 cut(s) 311, 975
CseI GACGC 1 cut(s) 789
Csp6I GTAC 4 cut(s) 19, 374, 670, 995
CviJI RGCY 9 cut(s) 290, 354, 380, 484, 515, 550, 720, 964, 983
CviKI_1 RGCY 9 cut(s) 290, 354, 380, 484, 515, 550, 720, 964, 983
CviQI GTAC 4 cut(s) 19, 374, 670, 995
DdeI CTNAG 2 cut(s) 361, 624
DpnI GATC 3 cut(s) 90, 852, 974
DpnII GATC 3 cut(s) 88, 850, 972
DriI GACNNNNNGTC 1 cut(s) 799
EaeI YGGCCR 1 cut(s) 981
Eam1105I GACNNNNNGTC 1 cut(s) 799
Eco105I TACGTA 1 cut(s) 470
Eco130I CCWWGG 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 568
Eco47III AGCGCT 2 cut(s) 275, 325
Eco57I CTGAAG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaqI GGGAC 1 cut(s) 430
FauNDI CATATG 1 cut(s) 805
Fnu4HI GCNGC 5 cut(s) 355, 358, 399, 482, 902
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 5 cut(s) 355, 358, 399, 482, 902
FspBI CTAG 3 cut(s) 221, 462, 920
GlaI GCGC 3 cut(s) 275, 325, 649
GluI GCNGC 5 cut(s) 355, 358, 399, 482, 902
GsuI CTGGAG 1 cut(s) 298
HaeII RGCGCY 2 cut(s) 277, 327
HaeIII GGCC 2 cut(s) 964, 983
HapII CCGG 1 cut(s) 377
HgaI GACGC 1 cut(s) 789
HhaI GCGC 3 cut(s) 276, 326, 650
Hin6I GCGC 3 cut(s) 274, 324, 648
HinP1I GCGC 3 cut(s) 274, 324, 648
HinfI GANTC 1 cut(s) 443
HpaII CCGG 1 cut(s) 377
Hpy166II GTNNAC 3 cut(s) 388, 752, 956
Hpy188I TCNGA 3 cut(s) 93, 421, 826
Hpy188III TCNNGA 5 cut(s) 221, 296, 623, 657, 745
Hpy8I GTNNAC 3 cut(s) 388, 752, 956
HpyAV CCTTC 4 cut(s) 186, 416, 526, 954
HpyCH4III ACNGT 2 cut(s) 348, 664
HpyCH4IV ACGT 3 cut(s) 469, 604, 693
HpyCH4V TGCA 8 cut(s) 268, 316, 388, 398, 488, 494, 910, 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 806, 907
HpyF3I CTNAG 2 cut(s) 361, 624
HpySE526I ACGT 3 cut(s) 469, 604, 693
HspAI GCGC 3 cut(s) 274, 324, 648
KpnI GGTACC 1 cut(s) 673
Kzo9I GATC 3 cut(s) 88, 850, 972
Lsp1109I GCAGC 5 cut(s) 341, 344, 410, 493, 913
LweI GCATC 1 cut(s) 303
MaeI CTAG 3 cut(s) 221, 462, 920
MaeII ACGT 3 cut(s) 469, 604, 693
MaeIII GTNAC 4 cut(s) 296, 593, 689, 694
MalI GATC 3 cut(s) 90, 852, 974
MboI GATC 3 cut(s) 88, 850, 972
MboII GAAGA 2 cut(s) 797, 893
MflI RGATCY 2 cut(s) 88, 850
MhlI GDGCHC 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 983
MluCI AATT 6 cut(s) 77, 244, 587, 812, 944, 999
MluNI TGGCCA 1 cut(s) 983
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 8 cut(s) 40, 79, 419, 458, 562, 630, 832, 859
Mox20I TGGCCA 1 cut(s) 983
MscI TGGCCA 1 cut(s) 983
MseI TTAA 2 cut(s) 243, 872
MslI CAYNNNNRTG 3 cut(s) 333, 393, 934
Msp20I TGGCCA 1 cut(s) 983
MspI CCGG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 806, 907
NcoI CCATGG 1 cut(s) 452
NdeI CATATG 1 cut(s) 805
NdeII GATC 3 cut(s) 88, 850, 972
NlaIV GGNNCC 3 cut(s) 671, 727, 852
NmuCI GTSAC 2 cut(s) 296, 593
NspI RCATGY 2 cut(s) 638, 821
NspV TTCGAA 1 cut(s) 948
PciI ACATGT 1 cut(s) 634
PkrI GCNGC 5 cut(s) 356, 359, 400, 483, 903
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 470
PscI ACATGT 1 cut(s) 634
PshBI ATTAAT 1 cut(s) 243
PsiI TTATAA 1 cut(s) 305
PspN4I GGNNCC 3 cut(s) 671, 727, 852
PspPI GGNCC 1 cut(s) 568
PsuI RGATCY 2 cut(s) 88, 850
RsaI GTAC 4 cut(s) 20, 375, 671, 996
RsaNI GTAC 4 cut(s) 19, 374, 670, 995
RseI CAYNNNNRTG 3 cut(s) 333, 393, 934
SaqAI TTAA 2 cut(s) 243, 872
SatI GCNGC 5 cut(s) 355, 358, 399, 482, 902
Sau3AI GATC 3 cut(s) 88, 850, 972
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 1 cut(s) 452
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 948
SinI GGWCC 1 cut(s) 568
SmiMI CAYNNNNRTG 3 cut(s) 333, 393, 934
SmlI CTYRAG 2 cut(s) 745, 863
SmoI CTYRAG 2 cut(s) 745, 863
SnaBI TACGTA 1 cut(s) 470
Sse9I AATT 6 cut(s) 77, 244, 587, 812, 944, 999
SspMI CTAG 3 cut(s) 221, 462, 920
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 2 cut(s) 348, 664
TaiI ACGT 3 cut(s) 472, 607, 696
TaqI TCGA 4 cut(s) 311, 792, 948, 975
TasI AATT 6 cut(s) 77, 244, 587, 812, 944, 999
TatI WGTACW 1 cut(s) 18
Tru1I TTAA 2 cut(s) 243, 872
Tru9I TTAA 2 cut(s) 243, 872
TscAI CASTG 1 cut(s) 930
TseFI GTSAC 2 cut(s) 296, 593
TseI GCWGC 5 cut(s) 354, 357, 398, 481, 901
Tsp45I GTSAC 2 cut(s) 296, 593
TspDTI ATGAA 2 cut(s) 159, 524
TspRI CASTG 1 cut(s) 930
VneI GTGCAC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 568
VspI ATTAAT 1 cut(s) 243
XbaI TCTAGA 1 cut(s) 220
XceI RCATGY 2 cut(s) 638, 821
XspI CTAG 3 cut(s) 221, 462, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.