Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

2737514 .. 2739445

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTATCCAAACTCTTGTACTTTTTGCTTCCATGTTTGAGAAAGGAAGAAAAATATGCTTTGGATAATGGAAGAAAATTATTAGAGGATCTTATTGCCTCTTGTGATGGAAAATCTAATCCCATTCACCATTACTCTGCTGATGAACTCATCAGGGCAACCAATAATTTCCATCCATCTTGCCTTATACAAGAGTTTCGTCCACACGCATTTAGGGGTGTTCTGGACAACCGATCGGTTATCATTAAGACCATGGAGGCAGCAGATGAAGCTAGGGATGAAGCTATTCGTAACATCGTTATTTCAGTACAGATGAGCACTCATAAGAATGTTTTGAAGTTGTTAGGTTGCTGCTTAGAGTTCCCATTACCAGTTCTGGTGCATGAATATGCAACACTAGGAGTTCTTAACAAGAAAGGAGGATTGAGGGATGATGTAGCTGTGCCATGGAAAACTAGAATACGAATCGCAAAGCAGGTTGCTAATGCTATTACATATCTCCATACAGCCTTCCCTAGACCCATCATTCATAGGGATCTAAGGCCTGATTGTATTCTCTTGGACGAGGAGTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACGATTCCTCCTAAGCAATCACATGTCAAAGATATAGTGAAAGGCACAGTAGGGTATCTTGACCCTGTGTATGTCAAGTCTGCTAACATCTCAGAAAAAACTGATGTTTATAGCTTTGGTGTCATTTTACTTGTTTTCTTGACGGGACAAAAACCCTTCAAAGAAAATCAGAGAGGATACTTTGAATATGAAGACTTCATTCCATACTTGAAATTACAATTAGCATGTGAGGGCCAAATCAAGACAATTGTGGATCCCAAAATCCTTGAGGAGCTAGGAGAAGGTGATGAGGAAGCACAACAGCAGTTGCATGATTTCTTATCACTGGCATTGTCATGTACCAACCTGGAAAGTGAAGCAAGGCCGGATATGATCAATGTGGCAAAAGAACTGGTACAAATTGAGAATTCTATTATGCCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

344

Amino Acids

38.91

Weight (kDa)

5.85

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	76 - 325	9e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	77 - 332	1.5e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AclWI	GGATC	4 cut(s)	96, 543, 854, 867
AcsI	RAATTY	1 cut(s)	1012
AfaI	GTAC	4 cut(s)	20, 309, 946, 1002
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	4 cut(s)	337, 766, 791, 817
AjnI	CCWGG	1 cut(s)	951
AluBI	AGCT	5 cut(s)	272, 284, 440, 720, 880
AluI	AGCT	5 cut(s)	272, 284, 440, 720, 880
Alw21I	GWGCWC	1 cut(s)	320
AlwI	GGATC	4 cut(s)	96, 543, 854, 867
AoxI	GGCC	3 cut(s)	542, 838, 968
ApeKI	GCWGC	2 cut(s)	260, 351
ApoI	RAATTY	1 cut(s)	1012
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	838
AsuHPI	GGTGA	2 cut(s)	119, 902
BamHI	GGATCC	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	272, 338
BccI	CCATC	4 cut(s)	101, 180, 184, 530
BciT130I	CCWGG	1 cut(s)	953
BciVI	GTATCC	1 cut(s)	776
BclI	TGATCA	1 cut(s)	978
BfaI	CTAG	6 cut(s)	273, 398, 456, 516, 881, 1030
BfuAI	ACCTGC	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	776
BisI	GCNGC	2 cut(s)	261, 352
BlsI	GCNGC	2 cut(s)	262, 353
Bme1390I	CCNGG	1 cut(s)	953
BmgT120I	GGNCC	1 cut(s)	838
BmiI	GGNNCC	1 cut(s)	861
BmrFI	CCNGG	1 cut(s)	953
BpiI	GAAGAC	1 cut(s)	804
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	893
BsaJI	CCNNGG	2 cut(s)	252, 446
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bse1I	ACTGG	3 cut(s)	371, 936, 1002
BseBI	CCWGG	1 cut(s)	953
BseDI	CCNNGG	2 cut(s)	252, 446
BseGI	GGATG	4 cut(s)	172, 283, 436, 1025
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	3 cut(s)	371, 936, 1002
BseRI	GAGGAG	2 cut(s)	581, 890
BseXI	GCAGC	2 cut(s)	272, 338
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	3 cut(s)	544, 840, 970
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	971
BslFI	GGGAC	1 cut(s)	765
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	544, 840, 970
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	88, 233, 535, 859, 978
Bsp19I	CCATGG	2 cut(s)	252, 446
BspANI	GGCC	3 cut(s)	544, 840, 970
BspCNI	CTCAG	1 cut(s)	710
BspLI	GGNNCC	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	4 cut(s)	96, 543, 854, 867
BsrI	ACTGG	3 cut(s)	371, 936, 1002
BssECI	CCNNGG	2 cut(s)	252, 446
BssMI	GATC	5 cut(s)	88, 233, 535, 859, 978
BssT1I	CCWWGG	2 cut(s)	252, 446
Bst2UI	CCWGG	1 cut(s)	953
Bst4CI	ACNGT	1 cut(s)	655
BstDEI	CTNAG	4 cut(s)	355, 539, 618, 697
BstDSI	CCRYGG	2 cut(s)	252, 446
BstF5I	GGATG	4 cut(s)	172, 283, 436, 1025
BstKTI	GATC	5 cut(s)	91, 236, 538, 862, 981
BstMBI	GATC	5 cut(s)	88, 233, 535, 859, 978
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	953
BstNSI	RCATGY	2 cut(s)	632, 834
BstSCI	CCNGG	1 cut(s)	951
BstV1I	GCAGC	2 cut(s)	272, 338
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	3 cut(s)	88, 535, 859
BstYI	RGATCY	3 cut(s)	88, 535, 859
BsuI	GTATCC	1 cut(s)	776
BsuRI	GGCC	3 cut(s)	544, 840, 970
BtgI	CCRYGG	2 cut(s)	252, 446
BtsCI	GGATG	4 cut(s)	172, 283, 436, 1025
BtsIMutI	CAGTG	1 cut(s)	929
BveI	ACCTGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	838
Csp6I	GTAC	4 cut(s)	19, 308, 945, 1001
CviAII	CATG	8 cut(s)	33, 253, 383, 447, 629, 831, 917, 942
CviJI	RGCY	9 cut(s)	272, 284, 440, 509, 544, 720, 840, 880, 970
CviKI_1	RGCY	9 cut(s)	272, 284, 440, 509, 544, 720, 840, 880, 970
CviQI	GTAC	4 cut(s)	19, 308, 945, 1001
DdeI	CTNAG	4 cut(s)	355, 539, 618, 697
DpnI	GATC	5 cut(s)	90, 235, 537, 861, 980
DpnII	GATC	5 cut(s)	88, 233, 535, 859, 978
Eco130I	CCWWGG	2 cut(s)	252, 446
Eco147I	AGGCCT	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	1012
EcoRII	CCWGG	1 cut(s)	951
EcoT14I	CCWWGG	2 cut(s)	252, 446
ErhI	CCWWGG	2 cut(s)	252, 446
FaeI	CATG	8 cut(s)	36, 256, 386, 450, 632, 834, 920, 945
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	8 cut(s)	32, 252, 382, 446, 628, 830, 916, 941
FbaI	TGATCA	1 cut(s)	978
Fnu4HI	GCNGC	2 cut(s)	261, 352
FokI	GGATG	4 cut(s)	159, 290, 443, 1012
Fsp4HI	GCNGC	2 cut(s)	261, 352
FspBI	CTAG	6 cut(s)	273, 398, 456, 516, 881, 1030
GluI	GCNGC	2 cut(s)	261, 352
HaeIII	GGCC	3 cut(s)	544, 840, 970
HapII	CCGG	1 cut(s)	971
Hin1II	CATG	8 cut(s)	36, 256, 386, 450, 632, 834, 920, 945
HinfI	GANTC	2 cut(s)	465, 610
HpaII	CCGG	1 cut(s)	971
HphI	GGTGA	2 cut(s)	119, 902
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	700, 777
Hpy188III	TCNNGA	4 cut(s)	224, 665, 745, 847
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	520, 772, 881
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4V	TGCA	3 cut(s)	382, 392, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	4 cut(s)	355, 539, 618, 697
Hsp92II	CATG	8 cut(s)	36, 256, 386, 450, 632, 834, 920, 945
Ksp22I	TGATCA	1 cut(s)	978
Kzo9I	GATC	5 cut(s)	88, 233, 535, 859, 978
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	2 cut(s)	272, 338
MaeI	CTAG	6 cut(s)	273, 398, 456, 516, 881, 1030
MaeIII	GTNAC	2 cut(s)	290, 587
MalI	GATC	5 cut(s)	90, 235, 537, 861, 980
MboI	GATC	5 cut(s)	88, 233, 535, 859, 978
MboII	GAAGA	3 cut(s)	59, 84, 809
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	3 cut(s)	88, 535, 859
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	8 cut(s)	77, 166, 581, 818, 824, 852, 1005, 1012
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	246, 408
MslI	CAYNNNNRTG	3 cut(s)	327, 387, 940
MspI	CCGG	1 cut(s)	971
MspR9I	CCNGG	1 cut(s)	953
MunI	CAATTG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	953
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	2 cut(s)	252, 446
NdeII	GATC	5 cut(s)	88, 233, 535, 859, 978
NlaIII	CATG	8 cut(s)	36, 256, 386, 450, 632, 834, 920, 945
NlaIV	GGNNCC	1 cut(s)	861
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	2 cut(s)	632, 834
PceI	AGGCCT	1 cut(s)	544
PciI	ACATGT	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	465, 610
PkrI	GCNGC	2 cut(s)	262, 353
Ple19I	CGATCG	1 cut(s)	236
PscI	ACATGT	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	951
PspGI	CCWGG	1 cut(s)	951
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	1 cut(s)	838
PsuI	RGATCY	3 cut(s)	88, 535, 859
PvuI	CGATCG	1 cut(s)	236
RsaI	GTAC	4 cut(s)	20, 309, 946, 1002
RsaNI	GTAC	4 cut(s)	19, 308, 945, 1001
RseI	CAYNNNNRTG	3 cut(s)	327, 387, 940
SaqAI	TTAA	2 cut(s)	246, 408
SatI	GCNGC	2 cut(s)	261, 352
Sau3AI	GATC	5 cut(s)	88, 233, 535, 859, 978
Sau96I	GGNCC	1 cut(s)	838
ScrFI	CCNGG	1 cut(s)	953
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	9 cut(s)	274, 286, 349, 442, 480, 722, 882, 892, 954
SmiMI	CAYNNNNRTG	3 cut(s)	327, 387, 940
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
Sse9I	AATT	8 cut(s)	77, 166, 581, 818, 824, 852, 1005, 1012
SseBI	AGGCCT	1 cut(s)	544
SspMI	CTAG	6 cut(s)	273, 398, 456, 516, 881, 1030
StuI	AGGCCT	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	951
StyI	CCWWGG	2 cut(s)	252, 446
TaaI	ACNGT	1 cut(s)	655
TasI	AATT	8 cut(s)	77, 166, 581, 818, 824, 852, 1005, 1012
TatI	WGTACW	2 cut(s)	18, 307
TfiI	GAWTC	2 cut(s)	465, 610
Tru1I	TTAA	2 cut(s)	246, 408
Tru9I	TTAA	2 cut(s)	246, 408
TscAI	CASTG	1 cut(s)	936
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	260, 351
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	7 cut(s)	159, 282, 294, 399, 518, 793, 810
TspRI	CASTG	1 cut(s)	936
XapI	RAATTY	1 cut(s)	1012
XceI	RCATGY	2 cut(s)	632, 834
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	6 cut(s)	273, 398, 456, 516, 881, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.