Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012210

Physical Location & Seq

Genomic Coordinates Reverse (-)

24827201 .. 24828273

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1108900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGCAAGCCTCAGCGGCCTCAGCGGCCCAAACCGCCGCCGTCCGGCCGCACGAACCTCGCCTCCTGCATCGTTGCCACCATCTTCCTAATCTTCGTCGTCATCGTCATCCTCATCGTCTACTTCACCGTCTTCAAACCCAAAGACCCCAAAATCTCCGTCTCCGCCGTCCAGCTCCCTTCCTTCTCCACCCAAAACTCCACCGTCAGCTTCACCTTCGCCCAATACGTCTCCATCCGCAATCCCAACCGGGCACCCTTCAACCACTACGACAGCACCCTCCAGCTCTTCTACTCCGGCAGCCAAGTCGGGTTCATGTTCATACCCGCCGGCAAGATCGAAGCGCGTCAGACCCAGTTCATGGCCGCCAACTTCGCCGTCCAGTCGTTCCCGGTCTCCGATCCCAATCGGGCTTCCGGGATGGTCCAGAACCCAATGGGGCCCACTTTCGGAGATGGGTTCAGCGGGTTGAGCGGCACCGGCGCCGGACCCAGCGGGCCCACAATGCAGATTGAGTCGCGGTTGGAGATGGCAGGTCGGGTTCGCGTCATGCACTTTTTCACCCACCATGTGGAGGCAAAATCTGAGTGTGAAGTTTCCATTGCTGTGAGTGATGGATCTGTACTGGGTTTTCACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

214

Amino Acids

23.16

Weight (kDa)

9.51

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64450 AT4G23930 AT4G23930
malus_domestica	MD01G1044000.v1.1 MD06G1108900.v1.1 MD11G1233400.v1.1 MD13G1190600.v1.1 MD14G1129800.v1.1
prunus_persica	Prupe.5G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194471
rosa_laevigata	RLG00000004198 RLG00000013582
rosa_multiflora	Rmu_ssc0000135.1_g000022
rosa_roxburghii	Rroxscaffold_3G00261330
rosa_rugosa	Rorug07G0015900
rosa_samantha	Rh2BG537900 Rh2DG546700 Rh7CG147500
rosa_wichuraiana	Rw7G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	524
AccB1I	GGYRCC	3 cut(s)	253, 476, 482
AccB7I	CCANNNNNTGG	2 cut(s)	361, 571
AccBSI	CCGCTC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	3 cut(s)	346, 520, 546
AclWI	GGATC	2 cut(s)	395, 625
AcoI	YGGCCR	2 cut(s)	46, 363
AcyI	GRCGYC	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	5 cut(s)	44, 361, 449, 571, 574
AgsI	TTSAA	2 cut(s)	136, 262
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	175, 210, 286
AluI	AGCT	3 cut(s)	175, 210, 286
Alw26I	GTCTC	3 cut(s)	166, 235, 400
AlwI	GGATC	2 cut(s)	395, 625
AoxI	GGCC	6 cut(s)	17, 26, 46, 363, 440, 497
ApaI	GGGCCC	2 cut(s)	444, 501
ApeKI	GCWGC	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	2 cut(s)	346, 485
AspS9I	GGNCC	7 cut(s)	27, 424, 440, 441, 488, 497, 498
AsuC2I	CCSGG	3 cut(s)	251, 392, 418
AsuHPI	GGTGA	3 cut(s)	118, 205, 553
AvaII	GGWCC	2 cut(s)	424, 488
BaeGI	GKGCMC	3 cut(s)	256, 444, 501
BanI	GGYRCC	3 cut(s)	253, 476, 482
BanII	GRGCYC	2 cut(s)	444, 501
BbsI	GAAGAC	1 cut(s)	124
BbvCI	CCTCAGC	2 cut(s)	12, 21
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	6 cut(s)	89, 242, 415, 449, 523, 608
BceAI	ACGGC	3 cut(s)	25, 152, 362
BcgI	CGANNNNNNTGC	4 cut(s)	40, 74, 289, 323
BcnI	CCSGG	3 cut(s)	251, 392, 418
BcoDI	GTCTC	3 cut(s)	166, 235, 400
BfoI	RGCGCY	1 cut(s)	486
BfuAI	ACCTGC	1 cut(s)	524
BglI	GCCNNNNNGGC	2 cut(s)	16, 25
BisI	GCNGC	7 cut(s)	17, 26, 38, 49, 301, 366, 475
BlsI	GCNGC	7 cut(s)	18, 27, 39, 50, 302, 367, 476
Bme1390I	CCNGG	3 cut(s)	251, 392, 418
Bme18I	GGWCC	2 cut(s)	424, 488
BmgT120I	GGNCC	7 cut(s)	27, 424, 440, 441, 488, 497, 498
BmiI	GGNNCC	7 cut(s)	255, 441, 442, 478, 484, 490, 499
BmrFI	CCNGG	3 cut(s)	251, 392, 418
BmrI	ACTGGG	2 cut(s)	349, 635
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	2 cut(s)	349, 635
BpiI	GAAGAC	1 cut(s)	124
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	266
Bpu10I	CCTNAGC	2 cut(s)	12, 21
BpuMI	CCSGG	3 cut(s)	251, 392, 418
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 361, 449, 571, 574
Bse118I	RCCGGY	2 cut(s)	329, 479
Bse1I	ACTGG	3 cut(s)	355, 382, 630
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	405
BseGI	GGATG	3 cut(s)	108, 234, 426
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	5 cut(s)	44, 361, 449, 571, 574
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	26, 35, 576
BseNI	ACTGG	3 cut(s)	355, 382, 630
BseSI	GKGCMC	3 cut(s)	256, 444, 501
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	312
BseYI	CCCAGC	1 cut(s)	491
Bsh1236I	CGCG	3 cut(s)	346, 520, 546
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	6 cut(s)	19, 28, 48, 365, 442, 499
BshNI	GGYRCC	3 cut(s)	253, 476, 482
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	8 cut(s)	45, 250, 297, 330, 392, 417, 480, 486
BslI	CCNNNNNNNGG	5 cut(s)	44, 361, 449, 571, 574
BsmAI	GTCTC	3 cut(s)	166, 235, 400
BsmBI	CGTCTC	2 cut(s)	166, 235
BsnI	GGCC	6 cut(s)	19, 28, 48, 365, 442, 499
Bso31I	GGTCTC	1 cut(s)	400
Bsp120I	GGGCCC	2 cut(s)	440, 497
Bsp1286I	GDGCHC	3 cut(s)	256, 444, 501
Bsp143I	GATC	3 cut(s)	336, 400, 617
BspANI	GGCC	6 cut(s)	19, 28, 48, 365, 442, 499
BspCNI	CTCAG	3 cut(s)	25, 34, 577
BspFNI	CGCG	3 cut(s)	346, 520, 546
BspLI	GGNNCC	7 cut(s)	255, 441, 442, 478, 484, 490, 499
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	2 cut(s)	395, 625
BspQI	GCTCTTC	1 cut(s)	293
BspT107I	GGYRCC	3 cut(s)	253, 476, 482
BspTNI	GGTCTC	1 cut(s)	400
BsrBI	CCGCTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	2 cut(s)	329, 479
BsrI	ACTGG	3 cut(s)	355, 382, 630
BssAI	RCCGGY	2 cut(s)	329, 479
BssMI	GATC	3 cut(s)	336, 400, 617
BssNI	GRCGYC	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	130, 205, 638
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	483
BstC8I	GCNNGC	3 cut(s)	8, 331, 497
BstDEI	CTNAG	3 cut(s)	12, 21, 585
BstF5I	GGATG	3 cut(s)	108, 234, 426
BstFNI	CGCG	3 cut(s)	346, 520, 546
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	346, 485
BstKTI	GATC	3 cut(s)	339, 403, 620
BstMAI	GTCTC	3 cut(s)	166, 235, 400
BstMBI	GATC	3 cut(s)	336, 400, 617
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 22, 25, 34, 374, 471, 480, 505
BstSCI	CCNGG	3 cut(s)	249, 390, 416
BstSLI	GKGCMC	3 cut(s)	256, 444, 501
BstUI	CGCG	3 cut(s)	346, 520, 546
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	6 cut(s)	19, 28, 48, 365, 442, 499
BtsCI	GGATG	3 cut(s)	108, 234, 426
BtsIMutI	CAGTG	1 cut(s)	634
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	3 cut(s)	8, 331, 497
CfoI	GCGC	2 cut(s)	346, 485
Cfr10I	RCCGGY	2 cut(s)	329, 479
Cfr13I	GGNCC	7 cut(s)	27, 424, 440, 441, 488, 497, 498
CseI	GACGC	2 cut(s)	335, 535
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	4 cut(s)	316, 361, 550, 569
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	3 cut(s)	12, 21, 585
DinI	GGCGCC	1 cut(s)	484
DpnI	GATC	3 cut(s)	338, 402, 619
DpnII	GATC	3 cut(s)	336, 400, 617
DraIII	CACNNNGTG	1 cut(s)	571
EaeI	YGGCCR	2 cut(s)	46, 363
EagI	CGGCCG	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	154
EclXI	CGGCCG	1 cut(s)	46
Eco24I	GRGCYC	2 cut(s)	444, 501
Eco31I	GGTCTC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	424, 488
Eco52I	CGGCCG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	440
EcoT38I	GRGCYC	2 cut(s)	444, 501
EgeI	GGCGCC	1 cut(s)	484
EheI	GGCGCC	1 cut(s)	484
Esp3I	CGTCTC	2 cut(s)	166, 235
FaeI	CATG	4 cut(s)	319, 364, 553, 572
FaiI	YATR	5 cut(s)	317, 323, 362, 551, 570
FatI	CATG	4 cut(s)	315, 360, 549, 568
FauI	CCCGC	3 cut(s)	334, 458, 488
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	17, 26, 38, 49, 301, 366, 475
FokI	GGATG	3 cut(s)	95, 221, 433
FriOI	GRGCYC	2 cut(s)	444, 501
Fsp4HI	GCNGC	7 cut(s)	17, 26, 38, 49, 301, 366, 475
GlaI	GCGC	2 cut(s)	345, 484
GluI	GCNGC	7 cut(s)	17, 26, 38, 49, 301, 366, 475
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	6 cut(s)	19, 28, 48, 365, 442, 499
HapII	CCGG	8 cut(s)	45, 250, 297, 330, 392, 417, 480, 486
HgaI	GACGC	2 cut(s)	335, 535
HhaI	GCGC	2 cut(s)	346, 485
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	319, 364, 553, 572
Hin6I	GCGC	2 cut(s)	344, 483
HinP1I	GCGC	2 cut(s)	344, 483
HinfI	GANTC	1 cut(s)	515
HpaII	CCGG	8 cut(s)	45, 250, 297, 330, 392, 417, 480, 486
HphI	GGTGA	3 cut(s)	118, 205, 553
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	351, 400, 452, 586
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	189, 193, 226, 268
HpyCH4III	ACNGT	3 cut(s)	130, 205, 638
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	69, 508, 553
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 22, 25, 34, 374, 471, 480, 505
HpyF3I	CTNAG	3 cut(s)	12, 21, 585
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	319, 364, 553, 572
HspAI	GCGC	2 cut(s)	344, 483
KasI	GGCGCC	1 cut(s)	482
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	336, 400, 617
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	228
MalI	GATC	3 cut(s)	338, 402, 619
MbiI	CCGCTC	1 cut(s)	474
MboI	GATC	3 cut(s)	336, 400, 617
MboII	GAAGA	4 cut(s)	76, 85, 124, 280
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	3 cut(s)	256, 444, 501
Mly113I	GGCGCC	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	7 cut(s)	21, 30, 68, 73, 122, 290, 568
MroNI	GCCGGC	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	4 cut(s)	16, 25, 465, 495
MspI	CCGG	8 cut(s)	45, 250, 297, 330, 392, 417, 480, 486
MspR9I	CCNGG	3 cut(s)	251, 392, 418
MvnI	CGCG	3 cut(s)	346, 520, 546
MwoI	GCNNNNNNNGC	8 cut(s)	16, 22, 25, 34, 374, 471, 480, 505
NaeI	GCCGGC	1 cut(s)	331
NarI	GGCGCC	1 cut(s)	483
NciI	CCSGG	3 cut(s)	251, 392, 418
NdeII	GATC	3 cut(s)	336, 400, 617
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	4 cut(s)	319, 364, 553, 572
NlaIV	GGNNCC	7 cut(s)	255, 441, 442, 478, 484, 490, 499
PciSI	GCTCTTC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 225
PdiI	GCCGGC	1 cut(s)	331
PflMI	CCANNNNNTGG	2 cut(s)	361, 571
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	7 cut(s)	18, 27, 39, 50, 302, 367, 476
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	491
PspN4I	GGNNCC	7 cut(s)	255, 441, 442, 478, 484, 490, 499
PspOMI	GGGCCC	2 cut(s)	440, 497
PspPI	GGNCC	7 cut(s)	27, 424, 440, 441, 488, 497, 498
PsuI	RGATCY	1 cut(s)	617
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
RseI	CAYNNNNRTG	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	293
SatI	GCNGC	7 cut(s)	17, 26, 38, 49, 301, 366, 475
Sau3AI	GATC	3 cut(s)	336, 400, 617
Sau96I	GGNCC	7 cut(s)	27, 424, 440, 441, 488, 497, 498
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	251, 392, 418
SduI	GDGCHC	3 cut(s)	256, 444, 501
SetI	ASST	7 cut(s)	60, 177, 212, 218, 231, 288, 538
SfaNI	GCATC	1 cut(s)	78
SfiI	GGCCNNNNNGGCC	1 cut(s)	25
SfoI	GGCGCC	1 cut(s)	484
SgrAI	CRCCGGYG	1 cut(s)	479
SinI	GGWCC	2 cut(s)	424, 488
SmiMI	CAYNNNNRTG	1 cut(s)	605
SspDI	GGCGCC	1 cut(s)	482
StyD4I	CCNGG	3 cut(s)	249, 390, 416
TaaI	ACNGT	3 cut(s)	130, 205, 638
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	339
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	6 cut(s)	19, 28, 40, 51, 368, 477
TscAI	CASTG	1 cut(s)	641
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	3 cut(s)	304, 310, 349
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	641
Van91I	CCANNNNNTGG	2 cut(s)	361, 571
VpaK11BI	GGWCC	2 cut(s)	424, 488
XmiI	GTMKAC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.