MD13G1190600.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012210
Physical Location & Seq
Forward (+)
16265893 .. 16266174
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1190600.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGCCGCCACCTTCACCGCCCAGTCGTTCCCGATCTTCGATCCCAATCAAGCTTCAAAGATGGTCCAAAACCCACCGGGCCCCACTTTCGGAGATAGGTTGAGCGGGTTAAGCAGCATCGGCGTCGGACCCGTCAATTTCACAATGCAGATTGGATCACGGTTAGAGATGGGGAGTCGGATTTGGGTCATGCACTTTTTTACCCACCATGTGGAGGTAAAATCTAGGTGTGAAGTGTACACTACTGTAAGTGATGGATCTATGTTGATTTTTCATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

94

Amino Acids

10.27

Weight (kDa)

6.89

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 3 cut(s) 6, 18, 105
AclWI GGATC 3 cut(s) 35, 163, 265
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 3 cut(s) 89, 211, 214
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 3 cut(s) 35, 163, 265
AoxI GGCC 2 cut(s) 3, 79
ApaI GGGCCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 114
AspS9I GGNCC 4 cut(s) 64, 79, 80, 128
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 7
AvaII GGWCC 2 cut(s) 64, 128
BaeGI GKGCMC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 55, 163, 248
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BcnI CCSGG 1 cut(s) 78
BfaI CTAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 6, 115
BlsI GCNGC 2 cut(s) 7, 116
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 64, 128
BmgT120I GGNCC 4 cut(s) 64, 79, 80, 128
BmiI GGNNCC 3 cut(s) 81, 82, 130
BmrFI CCNGG 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 211, 214
Bse1I ACTGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 89, 211, 214
BseNI ACTGG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 1 cut(s) 126
BshFI GGCC 2 cut(s) 5, 81
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 89, 211, 214
BsnI GGCC 2 cut(s) 5, 81
Bsp120I GGGCCC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 4 cut(s) 33, 40, 155, 257
BspACI CCGC 3 cut(s) 6, 18, 105
BspANI GGCC 2 cut(s) 5, 81
BspLI GGNNCC 3 cut(s) 81, 82, 130
BspPI GGATC 3 cut(s) 35, 163, 265
BsrBI CCGCTC 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 1 cut(s) 22
BssMI GATC 4 cut(s) 33, 40, 155, 257
BssNI GRCGYC 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 162, 247
BstACI GRCGYC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 237
BstKTI GATC 4 cut(s) 36, 43, 158, 260
BstMBI GATC 4 cut(s) 33, 40, 155, 257
BstMWI GCNNNNNNNGC 2 cut(s) 111, 120
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 2 cut(s) 5, 81
Cfr13I GGNCC 4 cut(s) 64, 79, 80, 128
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 190, 209
CviJI RGCY 3 cut(s) 5, 53, 81
CviKI_1 RGCY 3 cut(s) 5, 53, 81
CviQI GTAC 1 cut(s) 238
DpnI GATC 4 cut(s) 35, 42, 157, 259
DpnII GATC 4 cut(s) 33, 40, 155, 257
DraIII CACNNNGTG 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 64, 128
EcoO109I RGGNCCY 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 2 cut(s) 193, 212
FaiI YATR 3 cut(s) 191, 210, 263
FatI CATG 2 cut(s) 189, 208
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 6, 115
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 6, 115
FspBI CTAG 1 cut(s) 225
GluI GCNGC 2 cut(s) 6, 115
HaeIII GGCC 2 cut(s) 5, 81
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 193, 212
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 238, 240
Hpy188I TCNGA 3 cut(s) 92, 128, 180
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 238, 240
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 162, 247
HpyCH4V TGCA 2 cut(s) 148, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 120
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 193, 212
Kzo9I GATC 4 cut(s) 33, 40, 155, 257
LpnPI CCDG 2 cut(s) 35, 90
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 225
MalI GATC 4 cut(s) 35, 42, 157, 259
MbiI CCGCTC 1 cut(s) 105
MboI GATC 4 cut(s) 33, 40, 155, 257
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 2 cut(s) 106, 158
MnlI CCTC 1 cut(s) 208
MseI TTAA 1 cut(s) 110
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 111, 120
NciI CCSGG 1 cut(s) 78
NdeII GATC 4 cut(s) 33, 40, 155, 257
NlaIII CATG 2 cut(s) 193, 212
NlaIV GGNNCC 3 cut(s) 81, 82, 130
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 2 cut(s) 7, 116
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspN4I GGNNCC 3 cut(s) 81, 82, 130
PspOMI GGGCCC 1 cut(s) 79
PspPI GGNCC 4 cut(s) 64, 79, 80, 128
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 2 cut(s) 6, 115
Sau3AI GATC 4 cut(s) 33, 40, 155, 257
Sau96I GGNCC 4 cut(s) 64, 79, 80, 128
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 83
SetI ASST 5 cut(s) 14, 55, 101, 219, 230
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 2 cut(s) 64, 128
Sse9I AATT 1 cut(s) 136
SsiI CCGC 3 cut(s) 6, 18, 105
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 162, 247
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 64, 128
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.