Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012210

Physical Location & Seq

Genomic Coordinates Reverse (-)

57151300 .. 57152076

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAGCAAGCCTCAGACACAGAGACCGAAACCGCCCCCGTCGGGGCGGACGAACCTGGCGTCGTGCATAGTGGCCACCATCTTCCTAATCTTCGTGGTCATCGTCACGCTCATCGTCTACTTCACCGTCTTCAAACCCAAAGACCCCAAAATCTCCGTCAGCTCCGTCCAGCTCCCCTCCTTCTCCATCCTCAACTCCACCGTCAACTTCACCTTCTCCCAATACGTCTCCGTCAGCAACCCCAACCGCGCCGCCTTCCGCCACTACGACAGCACCCTCCAGCTCCTCTACTCCGGCAACCAAGTCGGCTTCATGTTCATCCCCGCCGGCAAAATCGAGCCCGGTCAGACCCAGTACATGGCCGCCACTTTCGCCGTCAACTCCTTCCCCGTTGCGGATCCCAATCTCTCCGGGGCGGTCCAGGGCCCGATGGGCTCCCCCCAGTTCGGAGACGGGCTCAGCGGGTTTCGCGGCGGAGGAGGCGGCGGGCCCACGATGGAGATAGAGTCGAGGCTGCAGATGGCGGGTCGGGTTCGGGTCATGCACTTTTTCACCCACCACGCGGAGGCGAATTCCGGGTGTAGAGTCGCCATTGCTGTTGCTAAACCACCCATGAACAACAATGGAAATGTAAAAATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

23.01

Weight (kDa)

10.01

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64450 AT4G23930 AT4G23930
malus_domestica	MD01G1044000.v1.1 MD06G1108900.v1.1 MD11G1233400.v1.1 MD13G1190600.v1.1 MD14G1129800.v1.1
prunus_persica	Prupe.5G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194471
rosa_laevigata	RLG00000004198 RLG00000013582
rosa_multiflora	Rmu_ssc0000135.1_g000022
rosa_roxburghii	Rroxscaffold_3G00261330
rosa_rugosa	Rorug07G0015900
rosa_samantha	Rh2BG537900 Rh2DG546700 Rh7CG147500
rosa_wichuraiana	Rw7G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	3 cut(s)	249, 471, 563
AclWI	GGATC	2 cut(s)	392, 405
AcoI	YGGCCR	2 cut(s)	72, 360
AcsI	RAATTY	1 cut(s)	571
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	7 cut(s)	41, 42, 358, 394, 446, 562, 565
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	54, 420
AluBI	AGCT	3 cut(s)	162, 172, 283
AluI	AGCT	3 cut(s)	162, 172, 283
Alw26I	GTCTC	3 cut(s)	16, 232, 444
AlwI	GGATC	2 cut(s)	392, 405
AoxI	GGCC	4 cut(s)	72, 360, 424, 488
ApaI	GGGCCC	2 cut(s)	428, 492
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	1 cut(s)	571
ArsI	GACNNNNNNTTYG	4 cut(s)	44, 76, 141, 173
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	5 cut(s)	418, 424, 425, 488, 489
AsuC2I	CCSGG	3 cut(s)	342, 412, 577
AsuHPI	GGTGA	3 cut(s)	115, 202, 544
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	2 cut(s)	428, 492
BalI	TGGCCA	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	5 cut(s)	342, 428, 437, 459, 492
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	5 cut(s)	86, 194, 424, 490, 514
BceAI	ACGGC	1 cut(s)	359
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	2 cut(s)	56, 422
BcnI	CCSGG	3 cut(s)	342, 412, 577
BcoDI	GTCTC	3 cut(s)	16, 232, 444
BfmI	CTRYAG	1 cut(s)	515
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	5 cut(s)	252, 363, 472, 484, 515
BlpI	GCTNAGC	1 cut(s)	458
BlsI	GCNGC	5 cut(s)	253, 364, 473, 485, 516
Bme1390I	CCNGG	5 cut(s)	56, 342, 412, 422, 577
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	5 cut(s)	418, 424, 425, 488, 489
BmiI	GGNNCC	4 cut(s)	399, 426, 436, 490
BmrFI	CCNGG	5 cut(s)	56, 342, 412, 422, 577
BmrI	ACTGGG	2 cut(s)	346, 436
BmuI	ACTGGG	2 cut(s)	346, 436
BpiI	GAAGAC	1 cut(s)	121
BplI	GAGNNNNNCTC	3 cut(s)	27, 441, 473
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	458
BpuMI	CCSGG	3 cut(s)	342, 412, 577
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	411, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 42, 358, 394, 446, 562, 565
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	352, 442
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	56, 422
BseDI	CCNNGG	2 cut(s)	411, 421
BseGI	GGATG	2 cut(s)	186, 318
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	7 cut(s)	41, 42, 358, 394, 446, 562, 565
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	26, 472
BseNI	ACTGG	2 cut(s)	352, 442
BseRI	GAGGAG	2 cut(s)	275, 492
BseSI	GKGCMC	2 cut(s)	428, 492
BseXI	GCAGC	1 cut(s)	501
Bsh1236I	CGCG	3 cut(s)	249, 471, 563
BshFI	GGCC	4 cut(s)	74, 362, 426, 490
BsiSI	CCGG	5 cut(s)	294, 327, 342, 411, 576
BslI	CCNNNNNNNGG	7 cut(s)	41, 42, 358, 394, 446, 562, 565
BsmAI	GTCTC	3 cut(s)	16, 232, 444
BsmBI	CGTCTC	2 cut(s)	232, 444
BsnI	GGCC	4 cut(s)	74, 362, 426, 490
Bso31I	GGTCTC	1 cut(s)	16
Bsp120I	GGGCCC	2 cut(s)	424, 488
Bsp1286I	GDGCHC	5 cut(s)	342, 428, 437, 459, 492
Bsp143I	GATC	1 cut(s)	397
Bsp1720I	GCTNAGC	1 cut(s)	458
BspANI	GGCC	4 cut(s)	74, 362, 426, 490
BspCNI	CTCAG	2 cut(s)	25, 471
BspFNI	CGCG	3 cut(s)	249, 471, 563
BspLI	GGNNCC	4 cut(s)	399, 426, 436, 490
BspMAI	CTGCAG	1 cut(s)	519
BspPI	GGATC	2 cut(s)	392, 405
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	352, 442
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	411, 421
BssMI	GATC	1 cut(s)	397
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	56, 422
Bst4CI	ACNGT	2 cut(s)	127, 202
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	8, 328, 488
BstDEI	CTNAG	2 cut(s)	12, 458
BstF5I	GGATG	2 cut(s)	186, 318
BstFNI	CGCG	3 cut(s)	249, 471, 563
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	3 cut(s)	16, 232, 444
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 432, 468, 480
BstNI	CCWGG	2 cut(s)	56, 422
BstSCI	CCNGG	5 cut(s)	54, 340, 410, 420, 575
BstSFI	CTRYAG	1 cut(s)	515
BstSLI	GKGCMC	2 cut(s)	428, 492
BstUI	CGCG	3 cut(s)	249, 471, 563
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	74, 362, 426, 490
BtsCI	GGATG	2 cut(s)	186, 318
Cac8I	GCNNGC	3 cut(s)	8, 328, 488
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	5 cut(s)	418, 424, 425, 488, 489
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	4 cut(s)	313, 358, 541, 613
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	12, 458
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
EaeI	YGGCCR	2 cut(s)	72, 360
EciI	GGCGGA	3 cut(s)	61, 248, 489
Eco24I	GRGCYC	5 cut(s)	342, 428, 437, 459, 492
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	2 cut(s)	54, 420
EcoT38I	GRGCYC	5 cut(s)	342, 428, 437, 459, 492
Esp3I	CGTCTC	2 cut(s)	232, 444
FaeI	CATG	4 cut(s)	316, 361, 544, 616
FaiI	YATR	5 cut(s)	68, 314, 359, 542, 614
FatI	CATG	4 cut(s)	312, 357, 540, 612
FauI	CCCGC	4 cut(s)	331, 455, 479, 517
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	5 cut(s)	252, 363, 472, 484, 515
FokI	GGATG	2 cut(s)	173, 305
FriOI	GRGCYC	5 cut(s)	342, 428, 437, 459, 492
Fsp4HI	GCNGC	5 cut(s)	252, 363, 472, 484, 515
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	5 cut(s)	252, 363, 472, 484, 515
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	4 cut(s)	74, 362, 426, 490
HapII	CCGG	5 cut(s)	294, 327, 342, 411, 576
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	316, 361, 544, 616
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	2 cut(s)	205, 379
HindII	GTYRAC	2 cut(s)	205, 379
HinfI	GANTC	2 cut(s)	506, 585
HpaII	CCGG	5 cut(s)	294, 327, 342, 411, 576
HphI	GGTGA	3 cut(s)	115, 202, 544
Hpy166II	GTNNAC	3 cut(s)	118, 205, 379
Hpy188I	TCNGA	3 cut(s)	15, 348, 449
Hpy8I	GTNNAC	3 cut(s)	118, 205, 379
Hpy99I	CGWCG	2 cut(s)	43, 64
HpyAV	CCTTC	4 cut(s)	190, 223, 265, 394
HpyCH4III	ACNGT	2 cut(s)	127, 202
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	66, 517, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 432, 468, 480
HpyF3I	CTNAG	2 cut(s)	12, 458
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	316, 361, 544, 616
HspAI	GCGC	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	4 cut(s)	167, 177, 288, 440
Lsp1109I	GCAGC	1 cut(s)	501
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	3 cut(s)	73, 82, 121
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	5 cut(s)	342, 428, 437, 459, 492
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	1 cut(s)	571
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	515, 594
MnlI	CCTC	9 cut(s)	21, 187, 200, 287, 296, 470, 473, 504, 559
Mox20I	TGGCCA	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	462
MspI	CCGG	5 cut(s)	294, 327, 342, 411, 576
MspR9I	CCNGG	5 cut(s)	56, 342, 412, 422, 577
MvaI	CCWGG	2 cut(s)	56, 422
MvnI	CGCG	3 cut(s)	249, 471, 563
MwoI	GCNNNNNNNGC	4 cut(s)	371, 432, 468, 480
NaeI	GCCGGC	1 cut(s)	328
NciI	CCSGG	3 cut(s)	342, 412, 577
NdeII	GATC	1 cut(s)	397
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	4 cut(s)	316, 361, 544, 616
NlaIV	GGNNCC	4 cut(s)	399, 426, 436, 490
NmuCI	GTSAC	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 56, 99
PdiI	GCCGGC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	253, 364, 473, 485, 516
PleI	GAGTC	2 cut(s)	514, 593
PpsI	GAGTC	2 cut(s)	514, 593
Psp6I	CCWGG	2 cut(s)	54, 420
PspGI	CCWGG	2 cut(s)	54, 420
PspN4I	GGNNCC	4 cut(s)	399, 426, 436, 490
PspOMI	GGGCCC	2 cut(s)	424, 488
PspPI	GGNCC	5 cut(s)	418, 424, 425, 488, 489
PstI	CTGCAG	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SatI	GCNGC	5 cut(s)	252, 363, 472, 484, 515
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	5 cut(s)	418, 424, 425, 488, 489
SchI	GAGTC	2 cut(s)	515, 594
ScrFI	CCNGG	5 cut(s)	56, 342, 412, 422, 577
SduI	GDGCHC	5 cut(s)	342, 428, 437, 459, 492
SetI	ASST	6 cut(s)	57, 164, 174, 215, 228, 285
SfcI	CTRYAG	1 cut(s)	515
SinI	GGWCC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	571
StyD4I	CCNGG	5 cut(s)	54, 340, 410, 420, 575
TaaI	ACNGT	2 cut(s)	127, 202
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	336, 509
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	571
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	4 cut(s)	254, 365, 474, 486
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	3 cut(s)	301, 307, 629
TspGWI	ACGGA	3 cut(s)	145, 154, 220
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.