MD11G1233400.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012210
Physical Location & Seq
Forward (+)
34031944 .. 34032225
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1233400.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGCCGTCCCCTTCACTGCCCAGTCGTTCCCTGTCTCCGATCCCAATCGAGCTTCTAGGATGGTCCAGAACCCACCGGGCCCCACTTTCGGAGATGGGTTGAGTGGGTTGAAAGGCACCGGCACCGGACTTGTTGGTTCCACAATGCAGATTAAGTCACGGTTGGAGATGGGGAGTCGGATTTGGGTCATGCACTTTCTCACCCACCATGTGGAGGTAAAATCTAGGTGTGAAGTGTACATTACTGTGAGTGATGGATCTATGTTGATTTTTCACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

94

Amino Acids

10.18

Weight (kDa)

9.03

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 116, 122
AccB7I CCANNNNNTGG 1 cut(s) 211
AclWI GGATC 2 cut(s) 35, 265
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 3 cut(s) 89, 211, 214
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 2 cut(s) 35, 265
AoxI GGCC 2 cut(s) 3, 79
ApaI GGGCCC 1 cut(s) 83
AspS9I GGNCC 3 cut(s) 64, 79, 80
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 83
BanI GGYRCC 2 cut(s) 116, 122
BanII GRGCYC 1 cut(s) 83
BccI CCATC 4 cut(s) 55, 89, 163, 248
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 57, 225
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 3 cut(s) 64, 79, 80
BmiI GGNNCC 5 cut(s) 81, 82, 118, 124, 139
BmrFI CCNGG 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 211, 214
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 45
BseGI GGATG 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 89, 211, 214
BseNI ACTGG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 83
BshFI GGCC 2 cut(s) 5, 81
BshNI GGYRCC 2 cut(s) 116, 122
BsiSI CCGG 3 cut(s) 77, 120, 126
BslI CCNNNNNNNGG 3 cut(s) 89, 211, 214
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 2 cut(s) 5, 81
Bsp120I GGGCCC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 2 cut(s) 40, 257
BspANI GGCC 2 cut(s) 5, 81
BspLI GGNNCC 5 cut(s) 81, 82, 118, 124, 139
BspPI GGATC 2 cut(s) 35, 265
BspT107I GGYRCC 2 cut(s) 116, 122
BsrFI RCCGGY 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 2 cut(s) 40, 257
Bst4CI ACNGT 2 cut(s) 162, 247
BstAUI TGTACA 1 cut(s) 237
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 2 cut(s) 43, 260
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 40, 257
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 2 cut(s) 5, 81
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 3 cut(s) 64, 79, 80
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 190, 209
CviJI RGCY 3 cut(s) 5, 53, 81
CviKI_1 RGCY 3 cut(s) 5, 53, 81
CviQI GTAC 1 cut(s) 238
DpnI GATC 2 cut(s) 42, 259
DpnII GATC 2 cut(s) 40, 257
DraIII CACNNNGTG 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 2 cut(s) 193, 212
FaiI YATR 3 cut(s) 191, 210, 263
FatI CATG 2 cut(s) 189, 208
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 83
FspBI CTAG 2 cut(s) 57, 225
HaeIII GGCC 2 cut(s) 5, 81
HapII CCGG 3 cut(s) 77, 120, 126
Hin1II CATG 2 cut(s) 193, 212
HinfI GANTC 1 cut(s) 175
HpaII CCGG 3 cut(s) 77, 120, 126
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 40, 92, 180
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 162, 247
HpyCH4V TGCA 2 cut(s) 148, 193
Hsp92II CATG 2 cut(s) 193, 212
Kzo9I GATC 2 cut(s) 40, 257
LpnPI CCDG 6 cut(s) 35, 45, 80, 90, 133, 139
MaeI CTAG 2 cut(s) 57, 225
MaeIII GTNAC 1 cut(s) 156
MalI GATC 2 cut(s) 42, 259
MboI GATC 2 cut(s) 40, 257
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 83
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 2 cut(s) 144, 158
MnlI CCTC 1 cut(s) 208
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 3 cut(s) 77, 120, 126
MspR9I CCNGG 1 cut(s) 78
NciI CCSGG 1 cut(s) 78
NdeII GATC 2 cut(s) 40, 257
NlaIII CATG 2 cut(s) 193, 212
NlaIV GGNNCC 5 cut(s) 81, 82, 118, 124, 139
NmuCI GTSAC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 211
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspN4I GGNNCC 5 cut(s) 81, 82, 118, 124, 139
PspOMI GGGCCC 1 cut(s) 79
PspPI GGNCC 3 cut(s) 64, 79, 80
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 2 cut(s) 40, 257
Sau96I GGNCC 3 cut(s) 64, 79, 80
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 83
SetI ASST 3 cut(s) 55, 219, 230
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 245
SspMI CTAG 2 cut(s) 57, 225
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 162, 247
TaqI TCGA 1 cut(s) 49
TatI WGTACW 1 cut(s) 237
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 156
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 64
XspI CTAG 2 cut(s) 57, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.