Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012210

Physical Location & Seq

Genomic Coordinates Reverse (-)

55627618 .. 55628121

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCAAGCCTCAGACACAGAGACCGAAACCGCCACCGTCGGGGCGGACCAACCTTGCGTCGTGCATAGTGGCCACCATCTTCCTAATCTTCGTGGTCATCGTCTCCCTCATCGTCTACTTCACCGTCTTTAAACCCAAAGACCCCAAAATCTCCGTCAGCTCCGTCCAGCTCCCCTCCTTCTCCATCCTCAACTCCACCGTCAACTTCACCTTCTCCCAATACGTCGCCGTCAGCAACCCCAACCGCGCCGCCTTCCGCCACTACGACAGCACCCTCCAGCTCCTCTACTCCGGCAACCAAGTCGGCTTCATGTTCATCCCCGCCGGCGAAATCGAGCCCGGCCAGACCCAGTACATGGCCGCCACTTTCGCCGTCAATTCCTTCCCCGTTGCGGATCCCAATCTCTCCGGGGCGGTCCAGGGCCCGATGGGCTCCCCCAGTTCGGCGACGGGCTCAGCGGGTTTCGCGGTGGAGGAGGCGGCGGGCCCACGATGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

167

Amino Acids

17.9

Weight (kDa)

9.46

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64450 AT4G23930 AT4G23930
malus_domestica	MD01G1044000.v1.1 MD06G1108900.v1.1 MD11G1233400.v1.1 MD13G1190600.v1.1 MD14G1129800.v1.1
prunus_persica	Prupe.5G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194471
rosa_laevigata	RLG00000004198 RLG00000013582
rosa_multiflora	Rmu_ssc0000135.1_g000022
rosa_roxburghii	Rroxscaffold_3G00261330
rosa_rugosa	Rorug07G0015900
rosa_samantha	Rh2BG537900 Rh2DG546700 Rh7CG147500
rosa_wichuraiana	Rw7G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	2 cut(s)	249, 470
AclWI	GGATC	2 cut(s)	392, 405
AcoI	YGGCCR	3 cut(s)	72, 343, 360
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	4 cut(s)	41, 358, 394, 445
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	3 cut(s)	162, 172, 283
AluI	AGCT	3 cut(s)	162, 172, 283
Alw26I	GTCTC	2 cut(s)	16, 109
AlwI	GGATC	2 cut(s)	392, 405
AoxI	GGCC	5 cut(s)	72, 343, 360, 424, 487
ApaI	GGGCCC	2 cut(s)	428, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	6 cut(s)	48, 418, 424, 425, 487, 488
AsuC2I	CCSGG	2 cut(s)	342, 412
AsuHPI	GGTGA	2 cut(s)	115, 202
AvaII	GGWCC	2 cut(s)	48, 418
BaeGI	GKGCMC	2 cut(s)	428, 491
BalI	TGGCCA	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	5 cut(s)	342, 428, 437, 458, 491
BccI	CCATC	4 cut(s)	86, 194, 424, 489
BceAI	ACGGC	2 cut(s)	215, 359
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	422
BcnI	CCSGG	2 cut(s)	342, 412
BcoDI	GTCTC	2 cut(s)	16, 109
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	3 cut(s)	252, 363, 483
BlpI	GCTNAGC	1 cut(s)	457
BlsI	GCNGC	3 cut(s)	253, 364, 484
Bme1390I	CCNGG	3 cut(s)	342, 412, 422
Bme18I	GGWCC	2 cut(s)	48, 418
BmgT120I	GGNCC	6 cut(s)	48, 418, 424, 425, 487, 488
BmiI	GGNNCC	4 cut(s)	399, 426, 436, 489
BmrFI	CCNGG	3 cut(s)	342, 412, 422
BmrI	ACTGGG	2 cut(s)	346, 435
BmuI	ACTGGG	2 cut(s)	346, 435
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	457
BpuMI	CCSGG	2 cut(s)	342, 412
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	411, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 358, 394, 445
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	352, 441
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	411, 421
BseGI	GGATG	2 cut(s)	186, 318
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	41, 358, 394, 445
BseMII	CTCAG	2 cut(s)	26, 471
BseNI	ACTGG	2 cut(s)	352, 441
BseRI	GAGGAG	2 cut(s)	275, 491
BseSI	GKGCMC	2 cut(s)	428, 491
Bsh1236I	CGCG	2 cut(s)	249, 470
BshFI	GGCC	5 cut(s)	74, 345, 362, 426, 489
BsiSI	CCGG	4 cut(s)	294, 327, 342, 411
BslI	CCNNNNNNNGG	4 cut(s)	41, 358, 394, 445
BsmAI	GTCTC	2 cut(s)	16, 109
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	5 cut(s)	74, 345, 362, 426, 489
Bso31I	GGTCTC	1 cut(s)	16
Bsp120I	GGGCCC	2 cut(s)	424, 487
Bsp1286I	GDGCHC	5 cut(s)	342, 428, 437, 458, 491
Bsp143I	GATC	1 cut(s)	397
Bsp1720I	GCTNAGC	1 cut(s)	457
BspANI	GGCC	5 cut(s)	74, 345, 362, 426, 489
BspCNI	CTCAG	2 cut(s)	25, 470
BspFNI	CGCG	2 cut(s)	249, 470
BspLI	GGNNCC	4 cut(s)	399, 426, 436, 489
BspPI	GGATC	2 cut(s)	392, 405
BspTNI	GGTCTC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	352, 441
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	411, 421
BssMI	GATC	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	3 cut(s)	39, 127, 202
BstC8I	GCNNGC	3 cut(s)	8, 328, 487
BstDEI	CTNAG	2 cut(s)	12, 457
BstF5I	GGATG	2 cut(s)	186, 318
BstFNI	CGCG	2 cut(s)	249, 470
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	2 cut(s)	16, 109
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 432, 467
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	340, 410, 420
BstSLI	GKGCMC	2 cut(s)	428, 491
BstUI	CGCG	2 cut(s)	249, 470
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	74, 345, 362, 426, 489
BtsCI	GGATG	2 cut(s)	186, 318
Cac8I	GCNNGC	3 cut(s)	8, 328, 487
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	6 cut(s)	48, 418, 424, 425, 487, 488
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	313, 358
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	12, 457
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DraI	TTTAAA	1 cut(s)	133
EaeI	YGGCCR	3 cut(s)	72, 343, 360
EciI	GGCGGA	2 cut(s)	61, 248
Eco24I	GRGCYC	5 cut(s)	342, 428, 437, 458, 491
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	48, 418
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	420
EcoT38I	GRGCYC	5 cut(s)	342, 428, 437, 458, 491
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	2 cut(s)	316, 361
FaiI	YATR	3 cut(s)	68, 314, 359
FatI	CATG	2 cut(s)	312, 357
FauI	CCCGC	3 cut(s)	331, 454, 478
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	252, 363, 483
FokI	GGATG	2 cut(s)	173, 305
FriOI	GRGCYC	5 cut(s)	342, 428, 437, 458, 491
Fsp4HI	GCNGC	3 cut(s)	252, 363, 483
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	3 cut(s)	252, 363, 483
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	5 cut(s)	74, 345, 362, 426, 489
HapII	CCGG	4 cut(s)	294, 327, 342, 411
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	316, 361
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaII	CCGG	4 cut(s)	294, 327, 342, 411
HphI	GGTGA	2 cut(s)	115, 202
Hpy166II	GTNNAC	2 cut(s)	118, 205
Hpy188I	TCNGA	1 cut(s)	15
Hpy8I	GTNNAC	2 cut(s)	118, 205
Hpy99I	CGWCG	4 cut(s)	43, 64, 230, 454
HpyAV	CCTTC	4 cut(s)	190, 223, 265, 394
HpyCH4III	ACNGT	3 cut(s)	39, 127, 202
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 432, 467
HpyF3I	CTNAG	2 cut(s)	12, 457
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	316, 361
HspAI	GCGC	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	4 cut(s)	167, 177, 288, 440
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	2 cut(s)	73, 82
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	5 cut(s)	342, 428, 437, 458, 491
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	1 cut(s)	379
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	8 cut(s)	21, 119, 187, 200, 287, 296, 469, 472
Mox20I	TGGCCA	1 cut(s)	74
MreI	CGCCGGCG	1 cut(s)	326
MroNI	GCCGGC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	4 cut(s)	294, 327, 342, 411
MspR9I	CCNGG	3 cut(s)	342, 412, 422
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	2 cut(s)	249, 470
MwoI	GCNNNNNNNGC	3 cut(s)	371, 432, 467
NaeI	GCCGGC	1 cut(s)	328
NciI	CCSGG	2 cut(s)	342, 412
NdeII	GATC	1 cut(s)	397
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	316, 361
NlaIV	GGNNCC	4 cut(s)	399, 426, 436, 489
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	253, 364, 484
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	4 cut(s)	399, 426, 436, 489
PspOMI	GGGCCC	2 cut(s)	424, 487
PspPI	GGNCC	6 cut(s)	48, 418, 424, 425, 487, 488
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	252, 363, 483
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	6 cut(s)	48, 418, 424, 425, 487, 488
ScrFI	CCNGG	3 cut(s)	342, 412, 422
SduI	GDGCHC	5 cut(s)	342, 428, 437, 458, 491
SetI	ASST	6 cut(s)	57, 164, 174, 215, 228, 285
SgrAI	CRCCGGYG	1 cut(s)	326
SinI	GGWCC	2 cut(s)	48, 418
Sse9I	AATT	1 cut(s)	379
StyD4I	CCNGG	3 cut(s)	340, 410, 420
TaaI	ACNGT	3 cut(s)	39, 127, 202
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	336
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	379
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	3 cut(s)	254, 365, 485
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TspDTI	ATGAA	2 cut(s)	301, 307
TspGWI	ACGGA	2 cut(s)	145, 154
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	48, 418
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.