AT4G23930

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012210
Physical Location & Seq
Reverse (-)
12435946 .. 12436827
882 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23930.1

Sequence Viewer

Length: 564 bp
ATGTCGAAGTCTTGTTCAAACCTCGCTTCATGCGCCGTCGCCACGCTCTTCATAGTCTTCTTAATCATCGCCGCACTTACTGTTTATCTCACAGTCTTTAGACCGAGAGATCCTGAGATCTCCGTCACTAGCGTCAAGGTTCCTTCATTCTCCGTCGCTAATAGCTCCGTTAGTTTCACCTTTTCTCAATTCTCCGCCGTTAGAAACCCTAACCGCGCAGCTTTCTCACACTACAACAATGTAATCCAGCTCTTTTACTATGGAAACCGGATCGGTTATACCTTCGTACCTGCTGGTGAGATCGAATCGGGTCGAACCAAGCGTATGTTAGCTACTTTCTCCGTTCAGTCGTTTCCTCTCGCGGCGGCCTCTAGTTCTCAAATCTCCGCCGCCCAATTTCAAAATTCGGATCGGTCCGGGTCAACAGTGGAAATAGAGTCGAAGCTGGAGATGGCGGGTCGGGTTCGGGTTCTCGGTTTGTTTACTCACCGAATCGCGGCTAAATGTAATTGTAGGATCGCGATTTCCTCGAGTGATGGTTCCATCGTAGCCGTCCGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

187

Amino Acids

20.23

Weight (kDa)

9.76

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 66 - 171 2e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AccII CGCG 4 cut(s) 216, 362, 497, 521
AciI CCGC 9 cut(s) 72, 195, 214, 362, 365, 387, 390, 455, 497
AclWI GGATC 4 cut(s) 104, 278, 417, 524
AcsI RAATTY 1 cut(s) 403
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 2 cut(s) 18, 401
AluBI AGCT 5 cut(s) 165, 221, 250, 332, 445
AluI AGCT 5 cut(s) 165, 221, 250, 332, 445
AlwI GGATC 4 cut(s) 104, 278, 417, 524
Ama87I CYCGRG 1 cut(s) 529
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 403
AspLEI GCGC 2 cut(s) 35, 218
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 3 cut(s) 169, 308, 479
AvaI CYCGRG 1 cut(s) 529
AvaII GGWCC 1 cut(s) 414
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 230
BccI CCATC 3 cut(s) 445, 530, 551
BceAI ACGGC 3 cut(s) 20, 182, 536
BcnI CCSGG 1 cut(s) 418
BfaI CTAG 2 cut(s) 129, 372
BfuAI ACCTGC 1 cut(s) 298
BglII AGATCT 1 cut(s) 117
BisI GCNGC 6 cut(s) 72, 219, 363, 366, 390, 498
BlsI GCNGC 6 cut(s) 73, 220, 364, 367, 391, 499
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 2 cut(s) 141, 541
BmrFI CCNGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMII CTCAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 4 cut(s) 216, 362, 497, 521
BshFI GGCC 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 2 cut(s) 268, 417
BslI CCNNNNNNNGG 1 cut(s) 496
BsnI GGCC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 529
Bsp143I GATC 6 cut(s) 109, 117, 270, 300, 409, 516
Bsp68I TCGCGA 1 cut(s) 521
BspACI CCGC 9 cut(s) 72, 195, 214, 362, 365, 387, 390, 455, 497
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 4 cut(s) 216, 362, 497, 521
BspLI GGNNCC 2 cut(s) 141, 541
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 4 cut(s) 104, 278, 417, 524
BspQI GCTCTTC 1 cut(s) 53
BssMI GATC 6 cut(s) 109, 117, 270, 300, 409, 516
Bst4CI ACNGT 3 cut(s) 82, 94, 427
Bst6I CTCTTC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 114
BstFNI CGCG 4 cut(s) 216, 362, 497, 521
BstHHI GCGC 2 cut(s) 35, 218
BstKTI GATC 6 cut(s) 112, 120, 273, 303, 412, 519
BstMBI GATC 6 cut(s) 109, 117, 270, 300, 409, 516
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 416
BstUI CGCG 4 cut(s) 216, 362, 497, 521
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 109, 117
BstYI RGATCY 2 cut(s) 109, 117
BsuRI GGCC 1 cut(s) 368
BtgZI GCGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 432
BtuMI TCGCGA 1 cut(s) 521
BveI ACCTGC 1 cut(s) 298
CfoI GCGC 2 cut(s) 35, 218
Cfr13I GGNCC 1 cut(s) 414
CpoI CGGWCCG 1 cut(s) 414
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 287
CspI CGGWCCG 1 cut(s) 414
CviAII CATG 1 cut(s) 30
CviJI RGCY 8 cut(s) 165, 221, 250, 332, 368, 445, 500, 551
CviKI_1 RGCY 8 cut(s) 165, 221, 250, 332, 368, 445, 500, 551
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 114
DpnI GATC 6 cut(s) 111, 119, 272, 302, 411, 518
DpnII GATC 6 cut(s) 109, 117, 270, 300, 409, 516
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 2 cut(s) 184, 376
Eco47I GGWCC 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 529
FaeI CATG 1 cut(s) 33
FaiI YATR 5 cut(s) 31, 53, 261, 279, 326
FatI CATG 1 cut(s) 29
FauI CCCGC 1 cut(s) 448
Fnu4HI GCNGC 6 cut(s) 72, 219, 363, 366, 390, 498
Fsp4HI GCNGC 6 cut(s) 72, 219, 363, 366, 390, 498
FspBI CTAG 2 cut(s) 129, 372
GlaI GCGC 2 cut(s) 34, 217
GluI GCNGC 6 cut(s) 72, 219, 363, 366, 390, 498
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 1 cut(s) 368
HapII CCGG 2 cut(s) 268, 417
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 35, 218
Hin1II CATG 1 cut(s) 33
Hin6I GCGC 2 cut(s) 33, 216
HinP1I GCGC 2 cut(s) 33, 216
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 3 cut(s) 305, 437, 492
HpaII CCGG 2 cut(s) 268, 417
HphI GGTGA 3 cut(s) 169, 308, 479
Hpy166II GTNNAC 2 cut(s) 423, 483
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 2 cut(s) 113, 520
Hpy8I GTNNAC 2 cut(s) 423, 483
Hpy99I CGWCG 2 cut(s) 41, 158
HpyAV CCTTC 2 cut(s) 153, 292
HpyCH4III ACNGT 3 cut(s) 82, 94, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 33
HspAI GCGC 2 cut(s) 33, 216
Kzo9I GATC 6 cut(s) 109, 117, 270, 300, 409, 516
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 7 cut(s) 126, 260, 279, 281, 303, 430, 431
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 2 cut(s) 129, 372
MaeIII GTNAC 1 cut(s) 124
MalI GATC 6 cut(s) 111, 119, 272, 302, 411, 518
MboI GATC 6 cut(s) 109, 117, 270, 300, 409, 516
MboII GAAGA 2 cut(s) 40, 49
MflI RGATCY 2 cut(s) 109, 117
MluCI AATT 4 cut(s) 188, 395, 403, 508
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 4 cut(s) 32, 366, 379, 538
MseI TTAA 2 cut(s) 62, 562
MspI CCGG 2 cut(s) 268, 417
MspR9I CCNGG 1 cut(s) 418
MvnI CGCG 4 cut(s) 216, 362, 497, 521
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 418
NdeII GATC 6 cut(s) 109, 117, 270, 300, 409, 516
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 141, 541
NmuCI GTSAC 1 cut(s) 124
NruI TCGCGA 1 cut(s) 521
PaeR7I CTCGAG 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PfeI GAWTC 2 cut(s) 305, 492
PkrI GCNGC 6 cut(s) 73, 220, 364, 367, 391, 499
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 141, 541
PspPI GGNCC 1 cut(s) 414
PspXI VCTCGAGB 1 cut(s) 529
PsuI RGATCY 2 cut(s) 109, 117
RruI TCGCGA 1 cut(s) 521
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
Rsr2I CGGWCCG 1 cut(s) 414
RsrII CGGWCCG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 62, 562
SatI GCNGC 6 cut(s) 72, 219, 363, 366, 390, 498
Sau3AI GATC 6 cut(s) 109, 117, 270, 300, 409, 516
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 529
SinI GGWCC 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 4 cut(s) 188, 395, 403, 508
SsiI CCGC 9 cut(s) 72, 195, 214, 362, 365, 387, 390, 455, 497
SspMI CTAG 2 cut(s) 129, 372
StyD4I CCNGG 1 cut(s) 416
TaaI ACNGT 3 cut(s) 82, 94, 427
TaqI TCGA 5 cut(s) 5, 303, 313, 440, 530
TaqII GACCGA 2 cut(s) 118, 402
TasI AATT 4 cut(s) 188, 395, 403, 508
TauI GCSGC 5 cut(s) 74, 365, 368, 392, 500
TfiI GAWTC 2 cut(s) 305, 492
Tru1I TTAA 2 cut(s) 62, 562
Tru9I TTAA 2 cut(s) 62, 562
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 18, 40, 135
TspGWI ACGGA 5 cut(s) 112, 142, 157, 331, 545
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 529
XspI CTAG 2 cut(s) 129, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.