AT1G66330

leaf senescence

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
24729629 .. 24732575
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66330.1

Sequence Viewer

Length: 1254 bp
ATGGCTCTTAACGTGAGCAAGGTTGTTCCCAATAGTCCAATTTTAGTTAAGAGTGTTAATGCTTCAAGATCTCGAAGAGTTCTGTTGGCGTATGTTCATCATCCTTTAGCTGCTAATAAGGGTTCATCTATTGAAGAGTTAAAGCAAGGTCTTTGTTGTACAAAGACTGTCACTTTTGTTAGTTCTCGGAGATGTTCTACATTGTGCTTTGTTGGAAAGTCTCAAGACACTGAAACTAATTCCCAAGTTGTACAAAAAGAAGGTGAGAAGCAAGTGATGCCGAGGAGGAAAAGTAGTAACTCAAGCCAACTTTTGGTGGAATATGTGTCTAATGATGCTAAGTTTGTGAATGAAAGAGCTCGTAATGACTTTGTTCTTCTATCTCGTGGTATTATGAGACTTGATGCTCGTGCACGACAGGATGTTGCCATTCTTGGTTCCGGGTTCCTTAAACTCGATGCTCGGGCAAGAGAAGATACAGAGAAAATAGACCGTGATGTCAAGAGAAAAGCCGAGCGCCTTCATCATATTGCTACTATATTTAAAAACATAGCTGAGTCTAAGTTGAAAAATGCCGCTGATAAGCATTGGAGCGATGGCGCTTTAGAGGCTGATTTAAGGCGAGCAGATTTCCGTGCTAAACAACGGGCCATGGAAGACGCATTAATGGCTTTAGAGTTTATTAAGAACATCCACGACATGATGGTGAACAAAATGGTTGACAGCTTGGTGACATCTGAAACTGGTACCACGGATCGCATATCGCTTGAGAAGAATGGAATAGCTCTCGGGTTTTTCCCTGGGGAAGTTTCATCTGATCGCATATCTGCTATTGAGGAAGCTTACAAGAGTATGGCATCAGCGCTCTCAGAAGCCGATGGAATTGACTACACTGACCCTGAAGAACTCGAGTTGTTAGTCACGACTCTGATTGACCTTGATGCAATGGATGGTAAAAGTAGTGCATCTCTCTTGGCTGAATGCTCAAGCTCTCCAGATGTCAATACAAGAAAAGCGTTGGCTAATGCTTTAGCAGCGGCACCATCAATGTGGACACTAGGAAATGCAGGAATGGGAGCATTACAGAGACTCGCTGAAGACAGTAACCCGGCGATTGCAGCAGCTGCTTCGAGAGCGATCAATGCGCTGAAGAAGCAATGGGAAGTAGAGGAAGGAGACTCACTGAGGTTTATGATGAACTTCGAGAGGCCGAATGATGATGATGATGTAGACAGTGACCTTGATGAGATCTGA

Protein Analysis

417

Amino Acids

45.86

Weight (kDa)

5.51

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
Acc65I GGTACC 1 cut(s) 746
AccB1I GGYRCC 2 cut(s) 746, 1039
AccB7I CCANNNNNTGG 1 cut(s) 313
AccI GTMKAC 1 cut(s) 1230
AciI CCGC 2 cut(s) 576, 1037
AclWI GGATC 1 cut(s) 762
AcuI CTGAAG 3 cut(s) 921, 1116, 1169
AfaI GTAC 3 cut(s) 160, 252, 748
AfeI AGCGCT 1 cut(s) 864
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 3 cut(s) 66, 134, 568
AjnI CCWGG 1 cut(s) 799
AluBI AGCT 8 cut(s) 110, 359, 554, 726, 785, 842, 990, 1124
AluI AGCT 8 cut(s) 110, 359, 554, 726, 785, 842, 990, 1124
Alw21I GWGCWC 2 cut(s) 361, 415
Alw26I GTCTC 4 cut(s) 225, 391, 1081, 1170
Alw44I GTGCAC 1 cut(s) 411
AlwI GGATC 1 cut(s) 762
AlwNI CAGNNNCTG 1 cut(s) 1124
Ama87I CYCGRG 3 cut(s) 462, 788, 908
Aor51HI AGCGCT 1 cut(s) 864
AoxI GGCC 2 cut(s) 648, 1208
ApaLI GTGCAC 1 cut(s) 411
ApeKI GCWGC 5 cut(s) 110, 1034, 1118, 1121, 1124
AseI ATTAAT 1 cut(s) 665
Asp718I GGTACC 1 cut(s) 746
AspLEI GCGC 4 cut(s) 519, 602, 865, 1147
AspS9I GGNCC 1 cut(s) 648
AsuC2I CCSGG 2 cut(s) 442, 1109
AsuHPI GGTGA 3 cut(s) 275, 718, 742
AvaI CYCGRG 3 cut(s) 462, 788, 908
BaeGI GKGCMC 1 cut(s) 415
BanI GGYRCC 2 cut(s) 746, 1039
BanII GRGCYC 1 cut(s) 361
BauI CACGAG 2 cut(s) 384, 408
BbsI GAAGAC 2 cut(s) 663, 1104
Bbv12I GWGCWC 2 cut(s) 361, 415
BbvI GCAGC 5 cut(s) 97, 1046, 1111, 1130, 1133
BccI CCATC 5 cut(s) 590, 697, 872, 944, 1051
BcgI CGANNNNNNTGC 2 cut(s) 1110, 1144
BciT130I CCWGG 1 cut(s) 801
BcnI CCSGG 2 cut(s) 442, 1109
BcoDI GTCTC 4 cut(s) 225, 391, 1081, 1170
BfaI CTAG 1 cut(s) 1058
BfoI RGCGCY 3 cut(s) 520, 603, 866
BglII AGATCT 2 cut(s) 68, 1248
BisI GCNGC 7 cut(s) 111, 576, 1035, 1038, 1119, 1122, 1125
BlsI GCNGC 7 cut(s) 112, 577, 1036, 1039, 1120, 1123, 1126
Bme1390I CCNGG 3 cut(s) 442, 801, 1109
BmeT110I CYCGRG 3 cut(s) 462, 788, 908
BmgT120I GGNCC 1 cut(s) 648
BmiI GGNNCC 4 cut(s) 439, 446, 748, 1041
BmrFI CCNGG 3 cut(s) 442, 801, 1109
BmsI GCATC 7 cut(s) 267, 325, 394, 448, 866, 931, 974
BpiI GAAGAC 2 cut(s) 663, 1104
BpmI CTGGAG 1 cut(s) 978
BpuEI CTTGAG 4 cut(s) 207, 286, 788, 970
BpuMI CCSGG 2 cut(s) 442, 1109
BsaJI CCNNGG 5 cut(s) 281, 651, 750, 799, 800
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 748
Bse3DI GCAATG 2 cut(s) 951, 1163
BseBI CCWGG 1 cut(s) 801
BseDI CCNNGG 5 cut(s) 281, 651, 750, 799, 800
BseGI GGATG 4 cut(s) 100, 427, 690, 955
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 2 cut(s) 951, 1163
BseMII CTCAG 3 cut(s) 546, 882, 1175
BseNI ACTGG 1 cut(s) 748
BseRI GAGGAG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 5 cut(s) 97, 1046, 1111, 1130, 1133
BshFI GGCC 2 cut(s) 650, 1210
BshNI GGYRCC 2 cut(s) 746, 1039
BsiHKAI GWGCWC 2 cut(s) 361, 415
BsiHKCI CYCGRG 3 cut(s) 462, 788, 908
BsiSI CCGG 2 cut(s) 441, 1109
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 4 cut(s) 225, 391, 1081, 1170
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 2 cut(s) 650, 1210
BsoBI CYCGRG 3 cut(s) 462, 788, 908
Bsp1286I GDGCHC 2 cut(s) 361, 415
Bsp1407I TGTACA 2 cut(s) 158, 250
Bsp143I GATC 5 cut(s) 68, 754, 817, 1137, 1248
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 2 cut(s) 576, 1037
BspANI GGCC 2 cut(s) 650, 1210
BspCNI CTCAG 3 cut(s) 547, 881, 1176
BspLI GGNNCC 4 cut(s) 439, 446, 748, 1041
BspPI GGATC 1 cut(s) 762
BspT107I GGYRCC 2 cut(s) 746, 1039
BsrDI GCAATG 2 cut(s) 951, 1163
BsrGI TGTACA 2 cut(s) 158, 250
BsrI ACTGG 1 cut(s) 748
BssECI CCNNGG 5 cut(s) 281, 651, 750, 799, 800
BssMI GATC 5 cut(s) 68, 754, 817, 1137, 1248
BssSI CACGAG 2 cut(s) 384, 408
BssT1I CCWWGG 1 cut(s) 651
Bst2BI CACGAG 2 cut(s) 384, 408
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 4 cut(s) 169, 494, 1103, 1235
Bst6I CTCTTC 2 cut(s) 70, 129
BstAPI GCANNNNNTGC 2 cut(s) 277, 1124
BstAUI TGTACA 2 cut(s) 158, 250
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 5 cut(s) 339, 555, 561, 868, 1184
BstDSI CCRYGG 2 cut(s) 651, 750
BstF5I GGATG 4 cut(s) 100, 427, 690, 955
BstH2I RGCGCY 3 cut(s) 520, 603, 866
BstHHI GCGC 4 cut(s) 519, 602, 865, 1147
BstKTI GATC 5 cut(s) 71, 757, 820, 1140, 1251
BstMAI GTCTC 4 cut(s) 225, 391, 1081, 1170
BstMBI GATC 5 cut(s) 68, 754, 817, 1137, 1248
BstMWI GCNNNNNNNGC 9 cut(s) 277, 608, 668, 1034, 1118, 1124, 1133, 1142, 1153
BstNI CCWGG 1 cut(s) 801
BstSCI CCNGG 3 cut(s) 440, 799, 1107
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 5 cut(s) 97, 1046, 1111, 1130, 1133
BstV2I GAAGAC 2 cut(s) 663, 1104
BstX2I RGATCY 2 cut(s) 68, 1248
BstXI CCANNNNNNTGG 1 cut(s) 1050
BstYI RGATCY 2 cut(s) 68, 1248
BsuRI GGCC 2 cut(s) 650, 1210
BtgI CCRYGG 2 cut(s) 651, 750
BtgZI GCGATG 1 cut(s) 609
BtsCI GGATG 4 cut(s) 100, 427, 690, 955
BtsIMutI CAGTG 4 cut(s) 228, 891, 1181, 1240
Cac8I GCNNGC 1 cut(s) 624
CaiI CAGNNNCTG 1 cut(s) 1124
CfoI GCGC 4 cut(s) 519, 602, 865, 1147
Cfr13I GGNCC 1 cut(s) 648
CseI GACGC 1 cut(s) 668
Csp6I GTAC 3 cut(s) 159, 251, 747
CviAII CATG 2 cut(s) 652, 700
CviQI GTAC 3 cut(s) 159, 251, 747
DdeI CTNAG 5 cut(s) 339, 555, 561, 868, 1184
DpnI GATC 5 cut(s) 70, 756, 819, 1139, 1250
DpnII GATC 5 cut(s) 68, 754, 817, 1137, 1248
DraI TTTAAA 1 cut(s) 544
DrdI GACNNNNNNGTC 1 cut(s) 497
DseDI GACNNNNNNGTC 1 cut(s) 497
Eam1104I CTCTTC 2 cut(s) 70, 129
EarI CTCTTC 2 cut(s) 70, 129
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 361
Eco47III AGCGCT 1 cut(s) 864
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 3 cut(s) 921, 1116, 1169
Eco88I CYCGRG 3 cut(s) 462, 788, 908
EcoICRI GAGCTC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 2 cut(s) 655, 703
FatI CATG 2 cut(s) 651, 699
FblI GTMKAC 1 cut(s) 1230
Fnu4HI GCNGC 7 cut(s) 111, 576, 1035, 1038, 1119, 1122, 1125
FokI GGATG 4 cut(s) 87, 434, 677, 962
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 7 cut(s) 111, 576, 1035, 1038, 1119, 1122, 1125
FspBI CTAG 1 cut(s) 1058
GlaI GCGC 4 cut(s) 518, 601, 864, 1146
GluI GCNGC 7 cut(s) 111, 576, 1035, 1038, 1119, 1122, 1125
GsuI CTGGAG 1 cut(s) 978
HaeII RGCGCY 3 cut(s) 520, 603, 866
HaeIII GGCC 2 cut(s) 650, 1210
HapII CCGG 2 cut(s) 441, 1109
HgaI GACGC 1 cut(s) 668
HhaI GCGC 4 cut(s) 519, 602, 865, 1147
Hin1II CATG 2 cut(s) 655, 703
Hin6I GCGC 4 cut(s) 517, 600, 863, 1145
HinP1I GCGC 4 cut(s) 517, 600, 863, 1145
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 4 cut(s) 557, 925, 1089, 1178
HpaII CCGG 2 cut(s) 441, 1109
HphI GGTGA 3 cut(s) 275, 718, 742
Hpy166II GTNNAC 5 cut(s) 413, 709, 721, 1053, 1231
Hpy188I TCNGA 6 cut(s) 189, 739, 817, 871, 930, 1253
Hpy188III TCNNGA 8 cut(s) 66, 72, 224, 502, 922, 995, 1131, 1204
Hpy8I GTNNAC 5 cut(s) 413, 709, 721, 1053, 1231
HpyAV CCTTC 3 cut(s) 254, 530, 1166
HpyCH4III ACNGT 4 cut(s) 169, 494, 1103, 1235
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 5 cut(s) 413, 944, 965, 1067, 1118
HpyF10VI GCNNNNNNNGC 9 cut(s) 277, 608, 668, 1034, 1118, 1124, 1133, 1142, 1153
HpyF3I CTNAG 5 cut(s) 339, 555, 561, 868, 1184
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 2 cut(s) 655, 703
HspAI GCGC 4 cut(s) 517, 600, 863, 1145
KpnI GGTACC 1 cut(s) 750
Kzo9I GATC 5 cut(s) 68, 754, 817, 1137, 1248
LmnI GCTCC 2 cut(s) 591, 1076
LpnPI CCDG 9 cut(s) 404, 454, 729, 786, 813, 912, 1008, 1053, 1122
Lsp1109I GCAGC 5 cut(s) 97, 1046, 1111, 1130, 1133
LweI GCATC 7 cut(s) 267, 325, 394, 448, 866, 931, 974
MaeI CTAG 1 cut(s) 1058
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 6 cut(s) 169, 296, 730, 919, 1103, 1235
MalI GATC 5 cut(s) 70, 756, 819, 1139, 1250
MboI GATC 5 cut(s) 68, 754, 817, 1137, 1248
MboII GAAGA 9 cut(s) 87, 146, 368, 485, 668, 784, 914, 1109, 1162
MflI RGATCY 2 cut(s) 68, 1248
MhlI GDGCHC 2 cut(s) 361, 415
MluCI AATT 3 cut(s) 39, 238, 882
MlyI GAGTC 4 cut(s) 566, 919, 1083, 1172
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 7 cut(s) 276, 279, 601, 829, 1162, 1179, 1200
MseI TTAA 9 cut(s) 9, 48, 57, 140, 450, 543, 617, 665, 684
MslI CAYNNNNRTG 2 cut(s) 704, 1048
MspA1I CMGCKG 3 cut(s) 578, 1037, 1124
MspI CCGG 2 cut(s) 441, 1109
MspR9I CCNGG 3 cut(s) 442, 801, 1109
Mva1269I GAATGC 1 cut(s) 986
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 9 cut(s) 277, 608, 668, 1034, 1118, 1124, 1133, 1142, 1153
NciI CCSGG 2 cut(s) 442, 1109
NcoI CCATGG 1 cut(s) 651
NdeII GATC 5 cut(s) 68, 754, 817, 1137, 1248
NlaIII CATG 2 cut(s) 655, 703
NlaIV GGNNCC 4 cut(s) 439, 446, 748, 1041
NmeAIII GCCGAG 2 cut(s) 306, 538
NmuCI GTSAC 4 cut(s) 169, 730, 919, 1235
PaeR7I CTCGAG 1 cut(s) 908
PasI CCCWGGG 1 cut(s) 800
PctI GAATGC 1 cut(s) 986
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 7 cut(s) 112, 577, 1036, 1039, 1120, 1123, 1126
PleI GAGTC 4 cut(s) 565, 919, 1083, 1172
PpsI GAGTC 4 cut(s) 565, 919, 1083, 1172
PshBI ATTAAT 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 799
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 4 cut(s) 439, 446, 748, 1041
PspPI GGNCC 1 cut(s) 648
PspXI VCTCGAGB 1 cut(s) 908
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 2 cut(s) 68, 1248
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 3 cut(s) 160, 252, 748
RsaNI GTAC 3 cut(s) 159, 251, 747
RseI CAYNNNNRTG 2 cut(s) 704, 1048
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 9 cut(s) 9, 48, 57, 140, 450, 543, 617, 665, 684
SatI GCNGC 7 cut(s) 111, 576, 1035, 1038, 1119, 1122, 1125
Sau3AI GATC 5 cut(s) 68, 754, 817, 1137, 1248
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 4 cut(s) 566, 919, 1083, 1172
ScrFI CCNGG 3 cut(s) 442, 801, 1109
SduI GDGCHC 2 cut(s) 361, 415
SfaNI GCATC 7 cut(s) 267, 325, 394, 448, 866, 931, 974
Sfr274I CTCGAG 1 cut(s) 908
SlaI CTCGAG 1 cut(s) 908
SmiMI CAYNNNNRTG 2 cut(s) 704, 1048
SmlI CTYRAG 5 cut(s) 222, 301, 767, 908, 985
SmoI CTYRAG 5 cut(s) 222, 301, 767, 908, 985
Sse9I AATT 3 cut(s) 39, 238, 882
SsiI CCGC 2 cut(s) 576, 1037
SspMI CTAG 1 cut(s) 1058
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 3 cut(s) 440, 799, 1107
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 4 cut(s) 169, 494, 1103, 1235
TaiI ACGT 1 cut(s) 15
TaqI TCGA 5 cut(s) 73, 456, 909, 1130, 1203
TasI AATT 3 cut(s) 39, 238, 882
TatI WGTACW 2 cut(s) 158, 250
TauI GCSGC 2 cut(s) 578, 1040
Tru1I TTAA 9 cut(s) 9, 48, 57, 140, 450, 543, 617, 665, 684
Tru9I TTAA 9 cut(s) 9, 48, 57, 140, 450, 543, 617, 665, 684
TscAI CASTG 4 cut(s) 235, 898, 1188, 1240
TseFI GTSAC 4 cut(s) 169, 730, 919, 1235
TseI GCWGC 5 cut(s) 110, 1034, 1118, 1121, 1124
Tsp45I GTSAC 4 cut(s) 169, 730, 919, 1235
TspDTI ATGAA 6 cut(s) 86, 114, 366, 512, 801, 1211
TspGWI ACGGA 2 cut(s) 623, 767
TspRI CASTG 4 cut(s) 235, 898, 1188, 1240
Van91I CCANNNNNTGG 1 cut(s) 313
VneI GTGCAC 1 cut(s) 411
VspI ATTAAT 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 1230
XspI CTAG 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.