Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Reverse (-)

31888764 .. 31892086

Gene Structure 3323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1258600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCACTCAACCAAGGATTTTGTATATTCATCTTTCTCAAGAAACTTATGATGTTGTTATCCTGACCTTCTGCTCTGTAGCACGGGCAAAAGAGGATACTGAGAAAATTGACCGTAATGTGAAGAAGAAAGCCGAGCTCCTTCATCATATTGCTATGCTTTTTATTAAAACATTGAATCTTTTTACTAATTTGATAACCAAAAATCCTCTGCAAATCTTAAAAGACAAAGCCGAGTCTAGATTGAAAACCGCTGCAGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATTTGCGCCGTGCTGACCTCCGTGCGAAACAACGTGCAATGGAAGATGCCCTAATGGCTTTGGAGTTTGTCAAAAATATTCTTGACAGGATGGTAAACAAATTGTACAATTTTCCTCTGCAAAGCGAAAATGGTGTTATATCAGAAAATGACATACTGGGGCGTATAATGCTTGAAAGAATGGGAAAAGAAGCTTACTGGAGTATGGCTTCTGCCTTCTTTGAAGCTGATGGAATTGATTATACCGATCCTGAAGAGCTCGAGCTGTTAATTGCGACTCTAATTGATCTCGATGCAATGGATGGTAAAAGTAGTGTATCGTTATTGGCGGAGTGTTCAAGTTCTCCTGATGTCAACACCAGGCAAGCAGTGGCCAATGCTTTGGCTGCAGCTCCATCTATGTGGACTCTTGGTAATGCAGGAATGGGAGCATTACAGGTTTGCTGGAAATTAAATAATTGTATTCATCATTCTTTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.8

Weight (kDa)

5.57

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	252, 620
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	178, 247, 467, 515, 630
AjnI	CCWGG	1 cut(s)	650
AluBI	AGCT	6 cut(s)	139, 485, 518, 550, 556, 683
AluI	AGCT	6 cut(s)	139, 485, 518, 550, 556, 683
Alw21I	GWGCWC	3 cut(s)	8, 141, 552
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	254, 677, 680
AspLEI	GCGC	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	665
BanII	GRGCYC	2 cut(s)	141, 552
Bbv12I	GWGCWC	3 cut(s)	8, 141, 552
BbvI	GCAGC	3 cut(s)	241, 664, 692
BccI	CCATC	4 cut(s)	376, 515, 587, 694
BceAI	ACGGC	2 cut(s)	285, 754
BciT130I	CCWGG	1 cut(s)	652
BciVI	GTATCC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	3 cut(s)	78, 255, 678
BfuI	GTATCC	1 cut(s)	91
BglI	GCCNNNNNGGC	2 cut(s)	287, 347
BisI	GCNGC	3 cut(s)	255, 678, 681
BlsI	GCNGC	3 cut(s)	256, 679, 682
Bme1390I	CCNGG	1 cut(s)	652
BmeT110I	CYCGRG	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	652
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	328, 574
BmuI	ACTGGG	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	453, 494
Bse3DI	GCAATG	2 cut(s)	336, 594
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	387, 598
BseMI	GCAATG	2 cut(s)	336, 594
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	453, 494
BseXI	GCAGC	3 cut(s)	241, 664, 692
BshFI	GGCC	1 cut(s)	665
BsiHKAI	GWGCWC	3 cut(s)	8, 141, 552
BsiHKCI	CYCGRG	1 cut(s)	551
BsnI	GGCC	1 cut(s)	665
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	8, 141, 552
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	538, 577
BspACI	CCGC	2 cut(s)	252, 620
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	2 cut(s)	259, 682
BspPI	GGATC	1 cut(s)	533
BspQI	GCTCTTC	1 cut(s)	540
BsrDI	GCAATG	2 cut(s)	336, 594
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	453, 494
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	538, 577
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	652
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	102, 283
BstF5I	GGATG	2 cut(s)	387, 598
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	2 cut(s)	541, 580
BstMBI	GATC	2 cut(s)	538, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 347, 460, 677
BstNI	CCWGG	1 cut(s)	652
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	3 cut(s)	78, 255, 678
BstV1I	GCAGC	3 cut(s)	241, 664, 692
BstXI	CCANNNNNNTGG	2 cut(s)	673, 693
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	665
BtsCI	GGATG	2 cut(s)	387, 598
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	657
CfoI	GCGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	397
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	102, 283
DpnI	GATC	2 cut(s)	540, 579
DpnII	GATC	2 cut(s)	538, 577
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	2 cut(s)	139, 550
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	2 cut(s)	141, 552
Eco53kI	GAGCTC	2 cut(s)	139, 550
Eco57I	CTGAAG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	551
EcoICRI	GAGCTC	2 cut(s)	139, 550
EcoRII	CCWGG	1 cut(s)	650
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	2 cut(s)	141, 552
ErhI	CCWWGG	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	255, 678, 681
FokI	GGATG	2 cut(s)	394, 605
FriOI	GRGCYC	2 cut(s)	141, 552
Fsp4HI	GCNGC	3 cut(s)	255, 678, 681
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	3 cut(s)	255, 678, 681
GsuI	CTGGAG	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	665
HhaI	GCGC	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	4 cut(s)	178, 236, 568, 697
Hpy166II	GTNNAC	3 cut(s)	388, 646, 696
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	7 cut(s)	41, 64, 240, 374, 542, 581, 638
Hpy8I	GTNNAC	3 cut(s)	388, 646, 696
HpyAV	CCTTC	3 cut(s)	79, 152, 517
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	7 cut(s)	214, 257, 329, 412, 587, 680, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 347, 460, 677
HpyF3I	CTNAG	2 cut(s)	102, 283
HpySE526I	ACGT	1 cut(s)	325
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	538, 577
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	4 cut(s)	144, 278, 688, 719
Lsp1109I	GCAGC	3 cut(s)	241, 664, 692
LweI	GCATC	2 cut(s)	328, 574
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	540, 579
MboI	GATC	2 cut(s)	538, 577
MboII	GAAGA	4 cut(s)	136, 139, 347, 557
MhlI	GDGCHC	3 cut(s)	8, 141, 552
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	9 cut(s)	108, 190, 392, 400, 525, 561, 573, 740, 748
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	3 cut(s)	245, 562, 691
MnlI	CCTC	5 cut(s)	88, 219, 280, 320, 417
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	4 cut(s)	168, 221, 560, 743
MslI	CAYNNNNRTG	2 cut(s)	270, 691
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	652
MwoI	GCNNNNNNNGC	4 cut(s)	287, 347, 460, 677
NdeII	GATC	2 cut(s)	538, 577
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	2 cut(s)	160, 259
NmuCI	GTSAC	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	551
PciSI	GCTCTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	256, 679, 682
PleI	GAGTC	3 cut(s)	244, 562, 691
PpsI	GAGTC	3 cut(s)	244, 562, 691
Psp124BI	GAGCTC	2 cut(s)	141, 552
Psp6I	CCWGG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	551
PstI	CTGCAG	2 cut(s)	259, 682
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	2 cut(s)	270, 691
SacI	GAGCTC	2 cut(s)	141, 552
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	4 cut(s)	168, 221, 560, 743
SatI	GCNGC	3 cut(s)	255, 678, 681
Sau3AI	GATC	2 cut(s)	538, 577
SchI	GAGTC	3 cut(s)	245, 562, 691
ScrFI	CCNGG	1 cut(s)	652
SduI	GDGCHC	3 cut(s)	8, 141, 552
SfaNI	GCATC	2 cut(s)	328, 574
SfcI	CTRYAG	3 cut(s)	78, 255, 678
Sfr274I	CTCGAG	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	270, 691
SmlI	CTYRAG	2 cut(s)	39, 551
SmoI	CTYRAG	2 cut(s)	39, 551
Sse9I	AATT	9 cut(s)	108, 190, 392, 400, 525, 561, 573, 740, 748
SsiI	CCGC	2 cut(s)	252, 620
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	2 cut(s)	141, 552
StyD4I	CCNGG	1 cut(s)	650
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	552, 582
TasI	AATT	9 cut(s)	108, 190, 392, 400, 525, 561, 573, 740, 748
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	4 cut(s)	168, 221, 560, 743
Tru9I	TTAA	4 cut(s)	168, 221, 560, 743
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	254, 677, 680
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	20, 134, 746
TspGWI	ACGGA	2 cut(s)	291, 302
TspRI	CASTG	1 cut(s)	666
XbaI	TCTAGA	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XhoI	CTCGAG	1 cut(s)	551
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.