Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Reverse (-)

18252985 .. 18254254

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGAAAAGTCTTGATTTCCCTCCTGGGGAAGTATCTGATCGATCGCATTAATGCAATTCAGGAAGCTTACTGGAGTATGGCGTCTGCCCTCTTTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTCGAGCTGTTAATTGCAACTCTAATTGATCTCGATGCAATGGATGGTAAAAGTAGTGTATCGTTATTGGCAGAGTGTTCAAGTTCTCCCGATGTCAATACCCGGAAAGCAGTAGCCAATGCTTTGGCTGCAGCTCCATCTATGTGGATTCTTGGTAATGCAGGGATGGGAGCATTACAGAGACTCGCAGAAGATAGCAATCGGGCAATTGCTGCCGCAGCCTCTAAAGCAATCTTTGAACTTAAGAAACAATGGGAGATTGAGGAAGGAGATAGCTGGAGGTTTACGATGAACCAAAATACCATTCAAGGAGAGGAAAGCCAAGAATCCGACGACAATGCAGATACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.46

Weight (kDa)

4.17

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	98, 213, 371, 440
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	6 cut(s)	68, 101, 133, 139, 266, 408
AluI	AGCT	6 cut(s)	68, 101, 133, 139, 266, 408
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	260, 263, 344, 350
AseI	ATTAAT	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	247, 275, 331, 362
BccI	CCATC	4 cut(s)	98, 170, 277, 292
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	261, 264, 345, 348, 351
BlsI	GCNGC	5 cut(s)	262, 265, 346, 349, 352
Bme1390I	CCNGG	2 cut(s)	26, 235
BmeT110I	CYCGRG	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	26, 235
BmsI	GCATC	1 cut(s)	157
BpmI	CTGGAG	2 cut(s)	94, 430
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	181, 303
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	247, 275, 331, 362
Bsh1285I	CGRYCG	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	39, 43, 121, 160
BspACI	CCGC	1 cut(s)	348
BspDI	ATCGAT	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	4 cut(s)	39, 43, 121, 160
BssNI	GRCGYC	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	181, 303
BstKTI	GATC	4 cut(s)	42, 46, 124, 163
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	4 cut(s)	39, 43, 121, 160
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 344, 350, 359
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	24, 233
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	4 cut(s)	247, 275, 331, 362
BstXI	CCANNNNNNTGG	2 cut(s)	256, 276
Bsu15I	ATCGAT	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	181, 303
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	72
DpnI	GATC	4 cut(s)	41, 45, 123, 162
DpnII	GATC	4 cut(s)	39, 43, 121, 160
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	135
FaiI	YATR	3 cut(s)	80, 117, 275
Fnu4HI	GCNGC	5 cut(s)	261, 264, 345, 348, 351
FokI	GGATG	2 cut(s)	188, 310
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	261, 264, 345, 348, 351
GluI	GCNGC	5 cut(s)	261, 264, 345, 348, 351
GsuI	CTGGAG	2 cut(s)	94, 430
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	3 cut(s)	280, 315, 458
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	2 cut(s)	39, 463
Hpy188III	TCNNGA	5 cut(s)	13, 62, 125, 164, 221
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	392
HpyCH4V	TGCA	6 cut(s)	56, 149, 170, 263, 293, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 344, 350, 359
Hsp92I	GRCGYC	1 cut(s)	83
Kzo9I	GATC	4 cut(s)	39, 43, 121, 160
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	271, 302
LpnPI	CCDG	8 cut(s)	11, 38, 47, 58, 138, 248, 279, 394
Lsp1109I	GCAGC	4 cut(s)	247, 275, 331, 362
LweI	GCATC	1 cut(s)	157
MalI	GATC	4 cut(s)	41, 45, 123, 162
MboI	GATC	4 cut(s)	39, 43, 121, 160
MboII	GAAGA	2 cut(s)	140, 335
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	5 cut(s)	57, 108, 144, 156, 339
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	6 cut(s)	32, 101, 364, 388, 405, 439
MseI	TTAA	3 cut(s)	51, 143, 375
MslI	CAYNNNNRTG	1 cut(s)	274
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	26, 235
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	260, 344, 350, 359
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	4 cut(s)	39, 43, 121, 160
PaeR7I	CTCGAG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	280, 458
PkrI	GCNGC	5 cut(s)	262, 265, 346, 349, 352
Ple19I	CGATCG	1 cut(s)	46
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	265
PvuI	CGATCG	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	51, 143, 375
SatI	GCNGC	5 cut(s)	261, 264, 345, 348, 351
Sau3AI	GATC	4 cut(s)	39, 43, 121, 160
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	26, 235
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	70, 103, 135, 141, 268, 410, 416
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	134, 374
SmoI	CTYRAG	2 cut(s)	134, 374
Sse9I	AATT	5 cut(s)	57, 108, 144, 156, 339
SsiI	CCGC	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	24, 233
TaqI	TCGA	3 cut(s)	42, 135, 165
TasI	AATT	5 cut(s)	57, 108, 144, 156, 339
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	280, 458
Tru1I	TTAA	3 cut(s)	51, 143, 375
Tru9I	TTAA	3 cut(s)	51, 143, 375
TseI	GCWGC	4 cut(s)	260, 263, 344, 350
TspDTI	ATGAA	1 cut(s)	437
Vha464I	CTTAAG	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.