MD17G1259100.v1.1

leaf senescence

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
31932579 .. 31945115
12537 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1259100.v1.1.491

Sequence Viewer

Length: 1386 bp
ATGGCACTTACTGCAAGCAAGGTTTCAAGCTGTCCTGCAGTGACTAATTCAAAAACGATTCCTAACTCATATGGAGTTTTAAATTCATTTTCCAAGTTGATGCAACGACATAACCTTCATTATCCAAGTCAAGGGGTTGAACAGAGACAGCTAAATTGTGAACGTATCGGTTCAGAAAAAATGAGCTTTTCTAATGCTGGTTTGAAGCGTATATGGGGTAAACCAGTTAATTTTACTGCCTCTCAGAGATCTACTGTCTTACACCTGTCAGGTGGCAGTCATAATACCAAAGCAAAAGAACGCATTGTAACTTATGGTGATTCAGCAAAGGAGACTAGTTCACAGATTAGGGATGAAAAAGATGGGGGCCCTCCAGTCTTTTCTGAGAGAACTACTCACTCCAATCAGGGTTTAGCTGAAGCTTGCAAATTTGTTTACAATGACGCGAAGTTTGTAAATGAAAGGGCACGCAATGACATTATTCTGCTTTCTCGTGGTATAATGAGGTTGGATGCCCGTGTGCGTCAAGACATTGCTATTCTTGGGTCGGGGTTTCTTAAGCTGGATGCACGGGCAAGAAAGGATACTGAGAAAATTGACCGTAATGTGAAGAAGAAAGCCGAGCTCCTTCATCATATTGCTATGATCTTAAAAGACAAAGCCGAGTCTAGATTGAAAACCGCTGCTGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATTTGCGCCGTGCTGACCTCCGTGCGAAACAACGTGCAATGGAAGATGCCCTAATGGCTTTGGAGTTTGTCAAAAATATTCTTGACAGGATGGTGAACAAATTGTACAATTTTCCTCTGCAAAGCGAAAATGGTGTTATATCAGAAAATGACATACTGGGGCGTATAATGCTTGAAAAGAATGGGAAAAGTCTTGATTTCCCTCCTGGAGAAGTATCTACTGATCGCATTACGGCAATTCAGGAAGCTTACTGGAGTATGGCTTCTGCCTTCTTTGAAGCTGATGGAATTGATTATACCGATCCTGAAGAGCTCGAGCTGTTAATTGCGACTCTAATTGATCTCGATGCAATGGATGGTAAAAGTAGTGTATCGTTATTGGCGGAGTGTTCAAGTTCTCCTGATGTCAACACCAGGCAAGCAGTGGCCAATGCTTTGGCTGCAGCTCCATCTATGTGGACTCTTGGTAATGCAGGAATGGGAGCATTACAGAGACTCGCAGAAGATAGCAATCCAGCAATTGCTGCCGCAGCCTCTAAAGCAATCTTTGAACTTAAGAAACAATGGAAGATTGAGGAAGGAGATAGCTGGAGGTTTACGATGAACCAAAATACCATTCGAGAAGATGAAAGCCAACAATCCGACGACAATGCAAATACAGATTGA

Protein Analysis

462

Amino Acids

51.05

Weight (kDa)

6.31

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 446
AciI CCGC 3 cut(s) 681, 1103, 1248
AclWI GGATC 1 cut(s) 1016
AcoI YGGCCR 1 cut(s) 1146
AcsI RAATTY 2 cut(s) 82, 428
AcuI CTGAAG 2 cut(s) 438, 1047
AfaI GTAC 1 cut(s) 827
AfiI CCNNNNNNNGG 1 cut(s) 131
AflII CTTAAG 2 cut(s) 557, 1274
AgsI TTSAA 9 cut(s) 27, 51, 140, 205, 676, 896, 998, 1113, 1271
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 2 cut(s) 925, 1133
AjuI GAANNNNNNNTTGG 2 cut(s) 1320, 1352
Alw21I GWGCWC 2 cut(s) 627, 1035
Alw26I GTCTC 3 cut(s) 139, 326, 1207
AlwI GGATC 1 cut(s) 1016
Ama87I CYCGRG 1 cut(s) 1034
AoxI GGCC 2 cut(s) 367, 1146
ApaI GGGCCC 1 cut(s) 371
ApeKI GCWGC 5 cut(s) 683, 1160, 1163, 1244, 1250
ApoI RAATTY 2 cut(s) 82, 428
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspLEI GCGC 1 cut(s) 729
AspS9I GGNCC 2 cut(s) 367, 368
AsuHPI GGTGA 2 cut(s) 329, 826
AvaI CYCGRG 1 cut(s) 1034
BaeGI GKGCMC 2 cut(s) 371, 469
BalI TGGCCA 1 cut(s) 1148
BanII GRGCYC 3 cut(s) 371, 627, 1035
BauI CACGAG 1 cut(s) 492
Bbv12I GWGCWC 2 cut(s) 627, 1035
BbvI GCAGC 5 cut(s) 670, 1147, 1175, 1231, 1262
BccI CCATC 5 cut(s) 356, 805, 998, 1070, 1177
BceAI ACGGC 2 cut(s) 714, 969
BcgI CGANNNNNNTGC 2 cut(s) 1352, 1386
BciT130I CCWGG 2 cut(s) 927, 1135
BciVI GTATCC 1 cut(s) 577
BcoDI GTCTC 3 cut(s) 139, 326, 1207
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 336, 669
BfmI CTRYAG 2 cut(s) 36, 1161
BfrI CTTAAG 2 cut(s) 557, 1274
BfuI GTATCC 1 cut(s) 577
BglI GCCNNNNNGGC 2 cut(s) 716, 776
BglII AGATCT 1 cut(s) 248
BisI GCNGC 6 cut(s) 684, 1161, 1164, 1245, 1248, 1251
BlsI GCNGC 6 cut(s) 685, 1162, 1165, 1246, 1249, 1252
Bme1390I CCNGG 2 cut(s) 927, 1135
BmeT110I CYCGRG 1 cut(s) 1034
BmgT120I GGNCC 2 cut(s) 367, 368
BmiI GGNNCC 3 cut(s) 368, 369, 709
BmrFI CCNGG 2 cut(s) 927, 1135
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 5 cut(s) 90, 502, 556, 757, 1057
BmuI ACTGGG 1 cut(s) 887
BplI GAGNNNNNCTC 2 cut(s) 379, 411
BpmI CTGGAG 4 cut(s) 357, 948, 994, 1330
BsaBI GATNNNNATC 1 cut(s) 1230
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 4 cut(s) 224, 374, 882, 977
Bse3DI GCAATG 4 cut(s) 478, 531, 765, 1077
Bse8I GATNNNNATC 1 cut(s) 1230
BseBI CCWGG 2 cut(s) 927, 1135
BseGI GGATG 5 cut(s) 358, 517, 571, 816, 1081
BseJI GATNNNNATC 1 cut(s) 1230
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 4 cut(s) 478, 531, 765, 1077
BseMII CTCAG 3 cut(s) 257, 375, 579
BseNI ACTGG 4 cut(s) 224, 374, 882, 977
BseSI GKGCMC 2 cut(s) 371, 469
BseXI GCAGC 5 cut(s) 670, 1147, 1175, 1231, 1262
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 2 cut(s) 369, 1148
BsiHKAI GWGCWC 2 cut(s) 627, 1035
BsiHKCI CYCGRG 1 cut(s) 1034
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 3 cut(s) 139, 326, 1207
BsnI GGCC 2 cut(s) 369, 1148
BsoBI CYCGRG 1 cut(s) 1034
Bsp120I GGGCCC 1 cut(s) 367
Bsp1286I GDGCHC 4 cut(s) 371, 469, 627, 1035
Bsp1407I TGTACA 1 cut(s) 825
Bsp143I GATC 5 cut(s) 248, 645, 943, 1021, 1060
BspACI CCGC 3 cut(s) 681, 1103, 1248
BspANI GGCC 2 cut(s) 369, 1148
BspCNI CTCAG 3 cut(s) 256, 376, 580
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 3 cut(s) 368, 369, 709
BspMAI CTGCAG 2 cut(s) 40, 1165
BspPI GGATC 1 cut(s) 1016
BspQI GCTCTTC 1 cut(s) 1023
BspTI CTTAAG 2 cut(s) 557, 1274
BsrDI GCAATG 4 cut(s) 478, 531, 765, 1077
BsrGI TGTACA 1 cut(s) 825
BsrI ACTGG 4 cut(s) 224, 374, 882, 977
BssMI GATC 5 cut(s) 248, 645, 943, 1021, 1060
BssSI CACGAG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 927, 1135
Bst4CI ACNGT 2 cut(s) 256, 602
Bst6I CTCTTC 1 cut(s) 1023
BstAFI CTTAAG 2 cut(s) 557, 1274
BstAPI GCANNNNNTGC 2 cut(s) 11, 1244
BstAUI TGTACA 1 cut(s) 825
BstC8I GCNNGC 4 cut(s) 16, 424, 469, 1140
BstDEI CTNAG 4 cut(s) 243, 384, 588, 712
BstF5I GGATG 5 cut(s) 358, 517, 571, 816, 1081
BstFNI CGCG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 729
BstKTI GATC 5 cut(s) 251, 648, 946, 1024, 1063
BstMAI GTCTC 3 cut(s) 139, 326, 1207
BstMBI GATC 5 cut(s) 248, 645, 943, 1021, 1060
BstMWI GCNNNNNNNGC 8 cut(s) 11, 716, 776, 889, 1160, 1244, 1250, 1259
BstNI CCWGG 2 cut(s) 927, 1135
BstSCI CCNGG 2 cut(s) 925, 1133
BstSFI CTRYAG 2 cut(s) 36, 1161
BstSLI GKGCMC 2 cut(s) 371, 469
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 5 cut(s) 670, 1147, 1175, 1231, 1262
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 1156, 1176
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 2 cut(s) 369, 1148
BtsCI GGATG 5 cut(s) 358, 517, 571, 816, 1081
BtsI GCAGTG 2 cut(s) 45, 1149
BtsIMutI CAGTG 2 cut(s) 45, 1149
Cac8I GCNNGC 4 cut(s) 16, 424, 469, 1140
CfoI GCGC 1 cut(s) 729
Cfr13I GGNCC 2 cut(s) 367, 368
CseI GACGC 2 cut(s) 452, 512
Csp6I GTAC 1 cut(s) 826
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 4 cut(s) 243, 384, 588, 712
DpnI GATC 5 cut(s) 250, 647, 945, 1023, 1062
DpnII GATC 5 cut(s) 248, 645, 943, 1021, 1060
DraI TTTAAA 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 1146
Eam1104I CTCTTC 1 cut(s) 1023
EarI CTCTTC 1 cut(s) 1023
EciI GGCGGA 1 cut(s) 1118
Ecl136II GAGCTC 2 cut(s) 625, 1033
Eco24I GRGCYC 3 cut(s) 371, 627, 1035
Eco53kI GAGCTC 2 cut(s) 625, 1033
Eco57I CTGAAG 2 cut(s) 438, 1047
Eco88I CYCGRG 1 cut(s) 1034
EcoICRI GAGCTC 2 cut(s) 625, 1033
EcoO109I RGGNCCY 2 cut(s) 367, 368
EcoRII CCWGG 2 cut(s) 925, 1133
EcoT38I GRGCYC 3 cut(s) 371, 627, 1035
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 6 cut(s) 684, 1161, 1164, 1245, 1248, 1251
FokI GGATG 5 cut(s) 365, 524, 578, 823, 1088
FriOI GRGCYC 3 cut(s) 371, 627, 1035
Fsp4HI GCNGC 6 cut(s) 684, 1161, 1164, 1245, 1248, 1251
FspBI CTAG 2 cut(s) 336, 669
GlaI GCGC 1 cut(s) 728
GluI GCNGC 6 cut(s) 684, 1161, 1164, 1245, 1248, 1251
GsuI CTGGAG 4 cut(s) 357, 948, 994, 1330
HaeIII GGCC 2 cut(s) 369, 1148
HgaI GACGC 2 cut(s) 452, 512
HhaI GCGC 1 cut(s) 729
Hin6I GCGC 1 cut(s) 727
HinP1I GCGC 1 cut(s) 727
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HindIII AAGCTT 2 cut(s) 420, 966
HinfI GANTC 6 cut(s) 58, 320, 665, 1051, 1180, 1215
HphI GGTGA 2 cut(s) 329, 826
Hpy166II GTNNAC 8 cut(s) 161, 221, 341, 436, 817, 1129, 1179, 1317
Hpy188I TCNGA 5 cut(s) 175, 246, 385, 865, 1363
Hpy188III TCNNGA 9 cut(s) 527, 669, 803, 914, 962, 1025, 1064, 1121, 1340
Hpy8I GTNNAC 8 cut(s) 161, 221, 341, 436, 817, 1129, 1179, 1317
Hpy99I CGWCG 1 cut(s) 1367
HpyAV CCTTC 4 cut(s) 125, 638, 1000, 1292
HpyCH4III ACNGT 2 cut(s) 256, 602
HpyCH4IV ACGT 2 cut(s) 163, 754
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 716, 776, 889, 1160, 1244, 1250, 1259
HpyF3I CTNAG 4 cut(s) 243, 384, 588, 712
HpySE526I ACGT 2 cut(s) 163, 754
HspAI GCGC 1 cut(s) 727
Kzo9I GATC 5 cut(s) 248, 645, 943, 1021, 1060
LguI GCTCTTC 1 cut(s) 1023
LmnI GCTCC 4 cut(s) 630, 707, 1171, 1202
Lsp1109I GCAGC 5 cut(s) 670, 1147, 1175, 1231, 1262
LweI GCATC 5 cut(s) 90, 502, 556, 757, 1057
MaeI CTAG 2 cut(s) 336, 669
MaeII ACGT 2 cut(s) 163, 754
MaeIII GTNAC 3 cut(s) 40, 307, 701
MalI GATC 5 cut(s) 250, 647, 945, 1023, 1062
MboI GATC 5 cut(s) 248, 645, 943, 1021, 1060
MboII GAAGA 7 cut(s) 622, 625, 776, 1040, 1235, 1300, 1355
MfeI CAATTG 1 cut(s) 1239
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 4 cut(s) 371, 469, 627, 1035
MlsI TGGCCA 1 cut(s) 1148
MluNI TGGCCA 1 cut(s) 1148
MlyI GAGTC 4 cut(s) 674, 1045, 1174, 1209
MmeI TCCRAC 2 cut(s) 489, 1386
Mox20I TGGCCA 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 1148
MseI TTAA 6 cut(s) 80, 228, 558, 650, 1043, 1275
MslI CAYNNNNRTG 2 cut(s) 699, 1174
Msp20I TGGCCA 1 cut(s) 1148
MspA1I CMGCKG 1 cut(s) 683
MspCI CTTAAG 2 cut(s) 557, 1274
MspR9I CCNGG 2 cut(s) 927, 1135
MunI CAATTG 1 cut(s) 1239
MvaI CCWGG 2 cut(s) 927, 1135
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 8 cut(s) 11, 716, 776, 889, 1160, 1244, 1250, 1259
NdeI CATATG 1 cut(s) 70
NdeII GATC 5 cut(s) 248, 645, 943, 1021, 1060
NlaIV GGNNCC 3 cut(s) 368, 369, 709
NmeAIII GCCGAG 2 cut(s) 646, 688
NmuCI GTSAC 2 cut(s) 40, 701
PaeR7I CTCGAG 1 cut(s) 1034
PciSI GCTCTTC 1 cut(s) 1023
PfeI GAWTC 2 cut(s) 58, 320
PfoI TCCNGGA 1 cut(s) 925
PkrI GCNGC 6 cut(s) 685, 1162, 1165, 1246, 1249, 1252
PleI GAGTC 4 cut(s) 673, 1045, 1174, 1209
PpsI GAGTC 4 cut(s) 673, 1045, 1174, 1209
Psp124BI GAGCTC 2 cut(s) 627, 1035
Psp6I CCWGG 2 cut(s) 925, 1133
PspGI CCWGG 2 cut(s) 925, 1133
PspN4I GGNNCC 3 cut(s) 368, 369, 709
PspOMI GGGCCC 1 cut(s) 367
PspPI GGNCC 2 cut(s) 367, 368
PspXI VCTCGAGB 1 cut(s) 1034
PsrI GAACNNNNNNTAC 2 cut(s) 809, 841
PstI CTGCAG 2 cut(s) 40, 1165
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 2 cut(s) 699, 1174
SacI GAGCTC 2 cut(s) 627, 1035
SapI GCTCTTC 1 cut(s) 1023
SaqAI TTAA 6 cut(s) 80, 228, 558, 650, 1043, 1275
SatI GCNGC 6 cut(s) 684, 1161, 1164, 1245, 1248, 1251
Sau3AI GATC 5 cut(s) 248, 645, 943, 1021, 1060
Sau96I GGNCC 2 cut(s) 367, 368
SchI GAGTC 4 cut(s) 674, 1045, 1174, 1209
ScrFI CCNGG 2 cut(s) 927, 1135
SduI GDGCHC 4 cut(s) 371, 469, 627, 1035
SfaNI GCATC 5 cut(s) 90, 502, 556, 757, 1057
SfcI CTRYAG 2 cut(s) 36, 1161
Sfr274I CTCGAG 1 cut(s) 1034
SlaI CTCGAG 1 cut(s) 1034
SmiMI CAYNNNNRTG 2 cut(s) 699, 1174
SmlI CTYRAG 3 cut(s) 557, 1034, 1274
SmoI CTYRAG 3 cut(s) 557, 1034, 1274
SpeI ACTAGT 1 cut(s) 335
SsiI CCGC 3 cut(s) 681, 1103, 1248
SspI AATATT 1 cut(s) 799
SspMI CTAG 2 cut(s) 336, 669
SstI GAGCTC 2 cut(s) 627, 1035
StyD4I CCNGG 2 cut(s) 925, 1133
TaaI ACNGT 2 cut(s) 256, 602
TaiI ACGT 2 cut(s) 166, 757
TaqI TCGA 3 cut(s) 1035, 1065, 1339
TatI WGTACW 1 cut(s) 825
TauI GCSGC 1 cut(s) 1250
TfiI GAWTC 2 cut(s) 58, 320
Tru1I TTAA 6 cut(s) 80, 228, 558, 650, 1043, 1275
Tru9I TTAA 6 cut(s) 80, 228, 558, 650, 1043, 1275
TscAI CASTG 2 cut(s) 45, 1149
TseFI GTSAC 2 cut(s) 40, 701
TseI GCWGC 5 cut(s) 683, 1160, 1163, 1244, 1250
Tsp45I GTSAC 2 cut(s) 40, 701
TspDTI ATGAA 7 cut(s) 75, 107, 369, 474, 620, 1337, 1362
TspGWI ACGGA 2 cut(s) 720, 731
TspRI CASTG 2 cut(s) 45, 1149
Vha464I CTTAAG 2 cut(s) 557, 1274
XapI RAATTY 2 cut(s) 82, 428
XbaI TCTAGA 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 1141
XhoI CTCGAG 1 cut(s) 1034
XspI CTAG 2 cut(s) 336, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.