Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004179

Physical Location & Seq

Genomic Coordinates Forward (+)

38489021 .. 38496287

Gene Structure 7267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG341500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCACTGTCTGCAAGCAAGGTCACAAGCTGTCCTGGGGTGGCTAATTCAAATACTCGTCATAAATGCTATGGAATTTCAAATAACTTTGTCAAGTTAGTGCAACGGAATAACTTTCACTGTCCAAGTCAAGGAGTGGAACTGAAGCAGCTAAACCATGGATGTCTATTGACAGAGAAAAAGAACTATTCCAATGATGGGTTGTGGCGTATGTTTAGTAACCCAGTTAGTTTCACTGTCTCTCAGAGATCGATTGTCGCACACCTGTCAAGAGGAACTCATAATACCAAAGAAAAAGAAGGAATTATTACTTATGGTGATTGTGCAGAGAAGACTTGTTCACAGATTGGAGACGAAGATGAACGTCAAGTCTTTCCTGAGAGAACTATTAGCTCCAGTCAGGGCTTAACTGAAGCTTGTAAATTTGTTCACAATGATGCAAAGTTTGTAAATGAAAGGGCTCGCAATGACATTATCCTGCTGTCTCGTGGCATATTGAGATTGGATGCTCGTGCACGTCAAGGTGTTGCTATTCTTGGGTCAGAGTTTCTTAAGCTTGATGCTCGGGCAAGAGAGGATACTGAAAAAATTGACCGTAAGGTGAAGAAGAAAGCTGAACGCCTTCATCATATTGCTAGGATCTTAAAAGACAAAGCAGAGTCTAGGTTGAAAAGTGTTGCCGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATCTCCGCCGTGCTGACATCCGTGCCAAACAACGTGCAATGCAAGATGCCTTAATGGCTTTGGAGTTTGTCAAAGACATTCTTGACATGATGGTGAGCAAAATGTACAATTTTCCTCTGCAGAGAGTAGATGGCATTCAATCAGAAAATGATAAACTGGGGTGTATAATGCTCGAAAAGAATGGCATAACTCTTAATTTCCCTCCAGGGGTAGTATCTACTGATCAAATTACTGCAATTCAGGTCCCTTTTTCTTGGCTATCTCCTATCATATTTCCTCCTCTGTTGCTTAAGAGCTGGAACATTTATACTTTCATTAATGGTACTGTGCAGGAAGCTTACTGGAGTATGGCATCTGCCCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCCATGGATGGTAAAAGTAGTGTATCCTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCAATACTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010150 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0072593 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

45.54

Weight (kDa)

7.1

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66330 AT1G66330
fragaria_vesca	FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740 FvH4_1g28740
malus_domestica	MD09G1263800.v1.1 MD17G1258600.v1.1 MD17G1259100.v1.1
prunus_persica	Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1 Prupe.3G161300_v2.0.a1
pyrus_communis	pycom09g17770
rosa_chinensis	RchiOBHm_Chr3g0493131 RchiOBHm_Chr7g0216651
rosa_laevigata	RLG00000022727
rosa_multiflora	Rmu_sc0008053.1_g000028 Rmu_sc0008162.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071580 Rroxscaffold_6G00391790 Rroxscaffold_7G00204460
rosa_rugosa	Rorug03G0259300
rosa_samantha	Rh3AG308200 Rh3BG344400 Rh3CG341500 Rh3DG343700 Rh5BG260800
rosa_wichuraiana	Rw0G002850 Rw0G018320 Rw2G023320 Rw3G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	2 cut(s)	647, 1100
AcsI	RAATTY	2 cut(s)	75, 422
AcuI	CTGAAG	4 cut(s)	164, 432, 1101, 1131
AfaI	GTAC	2 cut(s)	821, 1039
AfiI	CCNNNNNNNGG	3 cut(s)	131, 198, 922
AflII	CTTAAG	2 cut(s)	551, 1004
AgsI	TTSAA	4 cut(s)	51, 81, 670, 854
AjiI	CACGTC	1 cut(s)	518
AjnI	CCWGG	2 cut(s)	34, 919
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	3 cut(s)	244, 345, 489
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	647, 1100
Ama87I	CYCGRG	1 cut(s)	564
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	75, 422
AseI	ATTAAT	1 cut(s)	1032
Asp700I	GAANNNNTTC	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	958
AsuHPI	GGTGA	3 cut(s)	329, 613, 820
AvaI	CYCGRG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	463
BauI	CACGAG	2 cut(s)	486, 510
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	5 cut(s)	191, 799, 839, 1082, 1154
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	36, 921
BciVI	GTATCC	2 cut(s)	571, 1186
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	3 cut(s)	244, 345, 489
BfaI	CTAG	4 cut(s)	636, 663, 1197, 1218
BfmI	CTRYAG	1 cut(s)	833
BfrI	CTTAAG	2 cut(s)	551, 1004
BfuI	GTATCC	2 cut(s)	571, 1186
BglI	GCCNNNNNGGC	2 cut(s)	710, 770
BglII	AGATCT	1 cut(s)	1144
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	36, 921
Bme18I	GGWCC	1 cut(s)	958
BmeT110I	CYCGRG	1 cut(s)	564
BmgBI	CACGTC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	958
BmiI	GGNNCC	2 cut(s)	703, 960
BmrFI	CCNGG	2 cut(s)	36, 921
BmrI	ACTGGG	2 cut(s)	218, 881
BmsI	GCATC	6 cut(s)	427, 496, 550, 751, 1076, 1141
BmuI	ACTGGG	2 cut(s)	218, 881
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	3 cut(s)	379, 903, 1078
BpuEI	CTTGAG	1 cut(s)	1139
Bsa29I	ATCGAT	1 cut(s)	251
BsaJI	CCNNGG	4 cut(s)	35, 157, 920, 1155
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 198, 922
Bse1I	ACTGG	4 cut(s)	224, 396, 876, 1061
Bse3DI	GCAATG	2 cut(s)	472, 759
BseBI	CCWGG	2 cut(s)	36, 921
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	4 cut(s)	35, 157, 920, 1155
BseGI	GGATG	4 cut(s)	167, 511, 732, 1165
BseLI	CCNNNNNNNGG	3 cut(s)	131, 198, 922
BseMI	GCAATG	2 cut(s)	472, 759
BseMII	CTCAG	2 cut(s)	257, 369
BseNI	ACTGG	4 cut(s)	224, 396, 876, 1061
BseRI	GAGGAG	1 cut(s)	984
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	2 cut(s)	345, 1064
BshVI	ATCGAT	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	944
BslI	CCNNNNNNNGG	3 cut(s)	131, 198, 922
BsmAI	GTCTC	3 cut(s)	244, 345, 489
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	944
BsmI	GAATGC	1 cut(s)	849
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	2 cut(s)	463, 517
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
Bsp19I	CCATGG	2 cut(s)	157, 1155
BspACI	CCGC	1 cut(s)	721
BspCNI	CTCAG	2 cut(s)	256, 370
BspDI	ATCGAT	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	703, 960
BspMAI	CTGCAG	1 cut(s)	837
BspPI	GGATC	2 cut(s)	647, 1100
BspQI	GCTCTTC	1 cut(s)	1107
BspTI	CTTAAG	2 cut(s)	551, 1004
BsrDI	GCAATG	2 cut(s)	472, 759
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	4 cut(s)	224, 396, 876, 1061
BssECI	CCNNGG	4 cut(s)	35, 157, 920, 1155
BssMI	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
BssSI	CACGAG	2 cut(s)	486, 510
BssT1I	CCWWGG	2 cut(s)	157, 1155
Bst2BI	CACGAG	2 cut(s)	486, 510
Bst2UI	CCWGG	2 cut(s)	36, 921
Bst4CI	ACNGT	5 cut(s)	9, 122, 238, 596, 1042
Bst6I	CTCTTC	1 cut(s)	1107
BstAFI	CTTAAG	2 cut(s)	551, 1004
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	819
BstC8I	GCNNGC	2 cut(s)	16, 463
BstDEI	CTNAG	3 cut(s)	243, 378, 706
BstDSI	CCRYGG	2 cut(s)	157, 1155
BstF5I	GGATG	4 cut(s)	167, 511, 732, 1165
BstKTI	GATC	6 cut(s)	251, 642, 718, 940, 1108, 1147
BstMAI	GTCTC	3 cut(s)	244, 345, 489
BstMBI	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 710, 770
BstNI	CCWGG	2 cut(s)	36, 921
BstSCI	CCNGG	2 cut(s)	34, 919
BstSFI	CTRYAG	1 cut(s)	833
BstSLI	GKGCMC	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	639, 1144
BstYI	RGATCY	2 cut(s)	639, 1144
Bsu15I	ATCGAT	1 cut(s)	251
BsuI	GTATCC	2 cut(s)	571, 1186
BsuTUI	ATCGAT	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	157, 1155
BtrI	CACGTC	1 cut(s)	518
BtsCI	GGATG	4 cut(s)	167, 511, 732, 1165
BtsIMutI	CAGTG	3 cut(s)	5, 118, 234
Cac8I	GCNNGC	2 cut(s)	16, 463
Cfr13I	GGNCC	1 cut(s)	958
ClaI	ATCGAT	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	820, 1038
CviAII	CATG	3 cut(s)	158, 802, 1156
CviQI	GTAC	2 cut(s)	820, 1038
DdeI	CTNAG	3 cut(s)	243, 378, 706
DpnI	GATC	6 cut(s)	250, 641, 717, 939, 1107, 1146
DpnII	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
Eam1104I	CTCTTC	1 cut(s)	1107
EarI	CTCTTC	1 cut(s)	1107
EciI	GGCGGA	1 cut(s)	710
Eco130I	CCWWGG	2 cut(s)	157, 1155
Eco24I	GRGCYC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	4 cut(s)	164, 432, 1101, 1131
Eco88I	CYCGRG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	958
EcoRII	CCWGG	2 cut(s)	34, 919
EcoT14I	CCWWGG	2 cut(s)	157, 1155
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	2 cut(s)	157, 1155
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	3 cut(s)	161, 805, 1159
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	1 cut(s)	944
FatI	CATG	3 cut(s)	157, 801, 1155
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	4 cut(s)	174, 518, 719, 1172
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	4 cut(s)	636, 663, 1197, 1218
GluI	GCNGC	1 cut(s)	149
GsuI	CTGGAG	3 cut(s)	379, 903, 1078
Hin1II	CATG	3 cut(s)	161, 805, 1159
HindIII	AAGCTT	3 cut(s)	414, 554, 1050
HinfI	GANTC	1 cut(s)	659
HphI	GGTGA	3 cut(s)	329, 613, 820
Hpy166II	GTNNAC	3 cut(s)	341, 430, 515
Hpy188I	TCNGA	4 cut(s)	246, 544, 859, 1081
Hpy188III	TCNNGA	5 cut(s)	270, 377, 797, 1109, 1148
Hpy8I	GTNNAC	3 cut(s)	341, 430, 515
HpyAV	CCTTC	2 cut(s)	293, 632
HpyCH4III	ACNGT	5 cut(s)	9, 122, 238, 596, 1042
HpyCH4IV	ACGT	3 cut(s)	364, 517, 748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 710, 770
HpyF3I	CTNAG	3 cut(s)	243, 378, 706
HpySE526I	ACGT	3 cut(s)	364, 517, 748
Hsp92II	CATG	3 cut(s)	161, 805, 1159
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
LguI	GCTCTTC	1 cut(s)	1107
LmnI	GCTCC	2 cut(s)	398, 701
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	6 cut(s)	427, 496, 550, 751, 1076, 1141
MaeI	CTAG	4 cut(s)	636, 663, 1197, 1218
MaeII	ACGT	3 cut(s)	364, 517, 748
MaeIII	GTNAC	3 cut(s)	22, 218, 695
MalI	GATC	6 cut(s)	250, 641, 717, 939, 1107, 1146
MboI	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
MboII	GAAGA	5 cut(s)	343, 368, 616, 619, 1124
MflI	RGATCY	2 cut(s)	639, 1144
MhlI	GDGCHC	2 cut(s)	463, 517
MlyI	GAGTC	1 cut(s)	668
MnlI	CCTC	8 cut(s)	266, 568, 703, 840, 927, 1002, 1005, 1085
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	8 cut(s)	407, 552, 644, 767, 909, 1005, 1032, 1127
MslI	CAYNNNNRTG	3 cut(s)	435, 693, 806
MspCI	CTTAAG	2 cut(s)	551, 1004
MspR9I	CCNGG	2 cut(s)	36, 921
Mva1269I	GAATGC	1 cut(s)	849
MvaI	CCWGG	2 cut(s)	36, 921
MwoI	GCNNNNNNNGC	3 cut(s)	11, 710, 770
NcoI	CCATGG	2 cut(s)	157, 1155
NdeII	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
NlaIII	CATG	3 cut(s)	161, 805, 1159
NlaIV	GGNNCC	2 cut(s)	703, 960
NmuCI	GTSAC	2 cut(s)	22, 695
PciSI	GCTCTTC	1 cut(s)	1107
PctI	GAATGC	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	621
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	958
PshBI	ATTAAT	1 cut(s)	1032
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	2 cut(s)	34, 919
PspGI	CCWGG	2 cut(s)	34, 919
PspN4I	GGNNCC	2 cut(s)	703, 960
PspPI	GGNCC	1 cut(s)	958
PspPPI	RGGWCCY	1 cut(s)	958
PsrI	GAACNNNNNNTAC	2 cut(s)	268, 300
PstI	CTGCAG	1 cut(s)	837
PsuI	RGATCY	2 cut(s)	639, 1144
RsaI	GTAC	2 cut(s)	821, 1039
RsaNI	GTAC	2 cut(s)	820, 1038
RseI	CAYNNNNRTG	3 cut(s)	435, 693, 806
SapI	GCTCTTC	1 cut(s)	1107
SaqAI	TTAA	8 cut(s)	407, 552, 644, 767, 909, 1005, 1032, 1127
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	6 cut(s)	248, 639, 715, 937, 1105, 1144
Sau96I	GGNCC	1 cut(s)	958
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	2 cut(s)	36, 921
SduI	GDGCHC	2 cut(s)	463, 517
SfaNI	GCATC	6 cut(s)	427, 496, 550, 751, 1076, 1141
SfcI	CTRYAG	1 cut(s)	833
SinI	GGWCC	1 cut(s)	958
SmiMI	CAYNNNNRTG	3 cut(s)	435, 693, 806
SmlI	CTYRAG	3 cut(s)	551, 1004, 1118
SmoI	CTYRAG	3 cut(s)	551, 1004, 1118
SsiI	CCGC	1 cut(s)	721
SspMI	CTAG	4 cut(s)	636, 663, 1197, 1218
StyD4I	CCNGG	2 cut(s)	34, 919
StyI	CCWWGG	2 cut(s)	157, 1155
TaaI	ACNGT	5 cut(s)	9, 122, 238, 596, 1042
TaiI	ACGT	3 cut(s)	367, 520, 751
TaqI	TCGA	2 cut(s)	251, 888
TatI	WGTACW	1 cut(s)	819
Tru1I	TTAA	8 cut(s)	407, 552, 644, 767, 909, 1005, 1032, 1127
Tru9I	TTAA	8 cut(s)	407, 552, 644, 767, 909, 1005, 1032, 1127
TscAI	CASTG	3 cut(s)	12, 125, 241
TseFI	GTSAC	2 cut(s)	22, 695
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	2 cut(s)	22, 695
TspDTI	ATGAA	4 cut(s)	375, 468, 614, 1018
TspGWI	ACGGA	3 cut(s)	121, 714, 725
TspRI	CASTG	3 cut(s)	12, 125, 241
Vha464I	CTTAAG	2 cut(s)	551, 1004
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	958
VspI	ATTAAT	1 cut(s)	1032
XapI	RAATTY	2 cut(s)	75, 422
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	4 cut(s)	636, 663, 1197, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.