Rh3BG344400

leaf senescence

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
37453743 .. 37476530
22788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG344400.1

Sequence Viewer

Length: 1719 bp
ATGGAGGGCGTAGCTGGGCCTGGAGCTACTTATGTCACCAATGAGCGTGTGGCTTACAAGCTTAAGGGCTACTTTGATTTGGCCAAGGATGAGATCGCCAAGGCTGTTAGGCTGAAGAATGGGGCTCAAGATCGTGCTGGCAATCGCGGGGCCACAAGCAGTGCTTGTGGTTGCCGTTTGGGTCTGCAGAAAATGGAAAATAAAAGAAAAAAGAATGTTGATTTGATGGGCCTTCAAATTTGGGGGCTTTACTTGCTTCCCTTCCATTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTGGAAACAAGTCGGTCTTATCATCTTCATCTTCATCTTCATCTCACAGAGTTTGAGAGCTTGTGAGGGAGTATTTATTTCAAATATTCTTGTGGTGATTGGAACATGGCACTGTCTGCAAGCAAGGTCGCAAGCTGTCCTGGGGTGGCTAATTCAAATACTCTTCATAAATGCTATGGAATTTCAAATAACTTTGTCAAAGAAAAAGAACTATTCCAATGATGGGTTGTGGCGTATGTTTAGTAACCCAGTTAGTTTCACTGTCTCTCAGAGATCGATTGTCGCACACCTGTCAAGAGGAACTCATAATACCAAAGAAAAAGAAGGAATGATTACTTATGGTGATTGTGCAGAGAAGACTTGTTCACAGATTGGAGACGAAGATGAACGTCAAGTCTTTCCTGAGAGAACTATTAGCTCCAGTCAGGGCTTAACTGAAGCTTGTAAATTTGTTCACAATGATGCAAAGTTTGTAAATGAAAGGGCTCGCAATGACATTATCCTGCTGTCTCGTGGCATATTGAGATTGGATGCTCGTGCACGTCAAGGTGTTGCTATTCTTGGGTCAGAGTTTCTTAAGCTTGATGCTCGGGCAAGAGAGGATACTGAAAAAATTGACCGTAAGGTGAAGAAGAAAGCTGAACGCCTTCATCATATTGCTAGGATCTTAAAAGACAAAGCAGAGTCTAGGTTGAAAAGTGTTGCCGATAAGCATTGGAGTGACGGAGCCTTAGAGGCTGATCTCCGCCGTGCTGACATCCGTGCCAAACAACGTGCAATGCAAGATGCCCTAATGGCTTTGGAGTTTGTCAAAGACATTCTTGACATGATGGTGAGCAAAATGTACAATTTTCCTCTGCAGAGAGTAGATGGCATTCAATCAGAAAATGATAAACTGGGGCGTATAATGCTCGAAAAGAATGGCATAACTCTTAATTTTCCTCCAGGGGTAGTATCTACTGATCAAATTACTGCAATTCAGGAAGCTTACTGGAGTATGGCATCTGCCCTCTCTGAAGCTGATGGAATTGACTATACTGATCCTGAAGAGCTTGAGTTGTTAATTGCAACTCTTATAGATCTTGATGCCATGGATGGTAAAAGCAGTGTATCCTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCAATACTAGGCAAGCATTAGCCAATGCTTTGGCTGCAGCTCCATCTATGTGGACTTTGGGTAATGCAGGAATGGGAGCCTTGCAGAGACTGGCAGACGATAGCAACCCGACAATTGCTGCTGCAGCAACTAAAGCAATCTATGAACTTAAGAAACAATGGGAGATAGAGGAAGGAGATAACTGGAGGTTTACAATGAACCAATATAGCATGGAAGGAAAAGGAGAAGACCAAGAAGCTGATAATGATTCAGATACGGATTATAGGATTTAG

Protein Analysis

572

Amino Acids

63.79

Weight (kDa)

6.32

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 147, 1048
AclWI GGATC 2 cut(s) 974, 1337
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 3 cut(s) 237, 482, 749
AcuI CTGAAG 4 cut(s) 134, 759, 1338, 1368
AfaI GTAC 1 cut(s) 1148
AfiI CCNNNNNNNGG 1 cut(s) 525
AflII CTTAAG 3 cut(s) 62, 878, 1595
AgsI TTSAA 6 cut(s) 236, 384, 458, 488, 997, 1181
AjiI CACGTC 1 cut(s) 845
AjnI CCWGG 3 cut(s) 19, 441, 1246
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 4 cut(s) 571, 672, 816, 1528
Alw44I GTGCAC 1 cut(s) 840
AlwI GGATC 2 cut(s) 974, 1337
AlwNI CAGNNNCTG 1 cut(s) 1537
Ama87I CYCGRG 1 cut(s) 891
AoxI GGCC 4 cut(s) 17, 81, 150, 229
ApaLI GTGCAC 1 cut(s) 840
ApeKI GCWGC 5 cut(s) 1481, 1484, 1565, 1568, 1571
ApoI RAATTY 3 cut(s) 237, 482, 749
Asp700I GAANNNNTTC 1 cut(s) 948
AspS9I GGNCC 3 cut(s) 17, 150, 229
AsuHPI GGTGA 5 cut(s) 28, 409, 656, 940, 1147
AvaI CYCGRG 1 cut(s) 891
BaeGI GKGCMC 1 cut(s) 844
BalI TGGCCA 1 cut(s) 83
BanII GRGCYC 2 cut(s) 127, 790
BauI CACGAG 2 cut(s) 813, 837
BbsI GAAGAC 2 cut(s) 665, 1680
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 5 cut(s) 1468, 1496, 1552, 1555, 1583
BccI CCATC 7 cut(s) 220, 518, 1126, 1166, 1319, 1391, 1498
BceAI ACGGC 2 cut(s) 159, 1035
BciT130I CCWGG 3 cut(s) 21, 443, 1248
BciVI GTATCC 2 cut(s) 898, 1423
BclI TGATCA 1 cut(s) 1264
BcoDI GTCTC 4 cut(s) 571, 672, 816, 1528
BfaI CTAG 4 cut(s) 963, 990, 1434, 1455
BfmI CTRYAG 4 cut(s) 185, 1160, 1482, 1569
BfrI CTTAAG 3 cut(s) 62, 878, 1595
BfuI GTATCC 2 cut(s) 898, 1423
BglI GCCNNNNNGGC 2 cut(s) 1037, 1097
BglII AGATCT 1 cut(s) 1381
BisI GCNGC 5 cut(s) 1482, 1485, 1566, 1569, 1572
BlsI GCNGC 5 cut(s) 1483, 1486, 1567, 1570, 1573
Bme1390I CCNGG 3 cut(s) 21, 443, 1248
BmeT110I CYCGRG 1 cut(s) 891
BmgBI CACGTC 1 cut(s) 845
BmgT120I GGNCC 3 cut(s) 17, 150, 229
BmiI GGNNCC 3 cut(s) 151, 1030, 1525
BmrFI CCNGG 3 cut(s) 21, 443, 1248
BmrI ACTGGG 2 cut(s) 545, 1208
BmsI GCATC 6 cut(s) 754, 823, 877, 1078, 1313, 1378
BmuI ACTGGG 2 cut(s) 545, 1208
BpiI GAAGAC 2 cut(s) 665, 1680
BpmI CTGGAG 5 cut(s) 42, 706, 1230, 1315, 1651
BpuEI CTTGAG 2 cut(s) 111, 1376
Bsa29I ATCGAT 1 cut(s) 578
BsaJI CCNNGG 5 cut(s) 84, 99, 442, 1247, 1392
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse1I ACTGG 6 cut(s) 551, 723, 1203, 1298, 1542, 1634
Bse3DI GCAATG 2 cut(s) 799, 1086
BseBI CCWGG 3 cut(s) 21, 443, 1248
BseCI ATCGAT 1 cut(s) 578
BseDI CCNNGG 5 cut(s) 84, 99, 442, 1247, 1392
BseGI GGATG 4 cut(s) 94, 838, 1059, 1402
BseLI CCNNNNNNNGG 1 cut(s) 525
BseMI GCAATG 2 cut(s) 799, 1086
BseMII CTCAG 2 cut(s) 584, 696
BseNI ACTGG 6 cut(s) 551, 723, 1203, 1298, 1542, 1634
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 5 cut(s) 1468, 1496, 1552, 1555, 1583
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 4 cut(s) 19, 83, 152, 231
BshVI ATCGAT 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 891
BslI CCNNNNNNNGG 1 cut(s) 525
BsmAI GTCTC 4 cut(s) 571, 672, 816, 1528
BsmBI CGTCTC 1 cut(s) 672
BsmI GAATGC 1 cut(s) 1176
BsnI GGCC 4 cut(s) 19, 83, 152, 231
BsoBI CYCGRG 1 cut(s) 891
Bsp1286I GDGCHC 3 cut(s) 127, 790, 844
Bsp1407I TGTACA 1 cut(s) 1146
Bsp143I GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
Bsp19I CCATGG 1 cut(s) 1392
BspACI CCGC 2 cut(s) 147, 1048
BspANI GGCC 4 cut(s) 19, 83, 152, 231
BspCNI CTCAG 2 cut(s) 583, 697
BspDI ATCGAT 1 cut(s) 578
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 151, 1030, 1525
BspMAI CTGCAG 4 cut(s) 189, 1164, 1486, 1573
BspPI GGATC 2 cut(s) 974, 1337
BspQI GCTCTTC 1 cut(s) 1344
BspTI CTTAAG 3 cut(s) 62, 878, 1595
BsrDI GCAATG 2 cut(s) 799, 1086
BsrGI TGTACA 1 cut(s) 1146
BsrI ACTGG 6 cut(s) 551, 723, 1203, 1298, 1542, 1634
BssECI CCNNGG 5 cut(s) 84, 99, 442, 1247, 1392
BssMI GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
BssSI CACGAG 2 cut(s) 813, 837
BssT1I CCWWGG 3 cut(s) 84, 99, 1392
Bst2BI CACGAG 2 cut(s) 813, 837
Bst2UI CCWGG 3 cut(s) 21, 443, 1248
Bst4CI ACNGT 3 cut(s) 416, 565, 923
Bst6I CTCTTC 2 cut(s) 470, 1344
BstAFI CTTAAG 3 cut(s) 62, 878, 1595
BstAPI GCANNNNNTGC 1 cut(s) 418
BstAUI TGTACA 1 cut(s) 1146
BstC8I GCNNGC 5 cut(s) 139, 423, 435, 790, 1461
BstDEI CTNAG 3 cut(s) 570, 705, 1033
BstDSI CCRYGG 1 cut(s) 1392
BstF5I GGATG 4 cut(s) 94, 838, 1059, 1402
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 8 cut(s) 96, 133, 578, 969, 1045, 1267, 1345, 1384
BstMAI GTCTC 4 cut(s) 571, 672, 816, 1528
BstMBI GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
BstMWI GCNNNNNNNGC 8 cut(s) 253, 418, 1037, 1097, 1210, 1481, 1571, 1580
BstNI CCWGG 3 cut(s) 21, 443, 1248
BstSCI CCNGG 3 cut(s) 19, 441, 1246
BstSFI CTRYAG 4 cut(s) 185, 1160, 1482, 1569
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 5 cut(s) 1468, 1496, 1552, 1555, 1583
BstV2I GAAGAC 2 cut(s) 665, 1680
BstX2I RGATCY 2 cut(s) 966, 1381
BstXI CCANNNNNNTGG 2 cut(s) 1477, 1497
BstYI RGATCY 2 cut(s) 966, 1381
Bsu15I ATCGAT 1 cut(s) 578
BsuI GTATCC 2 cut(s) 898, 1423
BsuRI GGCC 4 cut(s) 19, 83, 152, 231
BsuTUI ATCGAT 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 1392
BtrI CACGTC 1 cut(s) 845
BtsCI GGATG 4 cut(s) 94, 838, 1059, 1402
BtsI GCAGTG 2 cut(s) 166, 1414
BtsIMutI CAGTG 4 cut(s) 166, 412, 561, 1414
Cac8I GCNNGC 5 cut(s) 139, 423, 435, 790, 1461
CaiI CAGNNNCTG 1 cut(s) 1537
Cfr13I GGNCC 3 cut(s) 17, 150, 229
ClaI ATCGAT 1 cut(s) 578
Csp6I GTAC 1 cut(s) 1147
CviAII CATG 4 cut(s) 408, 1129, 1393, 1657
CviQI GTAC 1 cut(s) 1147
DdeI CTNAG 3 cut(s) 570, 705, 1033
DpnI GATC 8 cut(s) 95, 132, 577, 968, 1044, 1266, 1344, 1383
DpnII GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 470, 1344
EarI CTCTTC 2 cut(s) 470, 1344
EciI GGCGGA 1 cut(s) 1037
Eco130I CCWWGG 3 cut(s) 84, 99, 1392
Eco24I GRGCYC 2 cut(s) 127, 790
Eco57I CTGAAG 4 cut(s) 134, 759, 1338, 1368
Eco88I CYCGRG 1 cut(s) 891
EcoRII CCWGG 3 cut(s) 19, 441, 1246
EcoT14I CCWWGG 3 cut(s) 84, 99, 1392
EcoT38I GRGCYC 2 cut(s) 127, 790
ErhI CCWWGG 3 cut(s) 84, 99, 1392
Esp3I CGTCTC 1 cut(s) 672
FaeI CATG 4 cut(s) 411, 1132, 1396, 1660
FalI AAGNNNNNCTT 8 cut(s) 56, 88, 148, 180, 303, 335, 1107, 1139
FatI CATG 4 cut(s) 407, 1128, 1392, 1656
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 1264
Fnu4HI GCNGC 5 cut(s) 1482, 1485, 1566, 1569, 1572
FokI GGATG 4 cut(s) 101, 845, 1046, 1409
FriOI GRGCYC 2 cut(s) 127, 790
Fsp4HI GCNGC 5 cut(s) 1482, 1485, 1566, 1569, 1572
FspBI CTAG 4 cut(s) 963, 990, 1434, 1455
GluI GCNGC 5 cut(s) 1482, 1485, 1566, 1569, 1572
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 5 cut(s) 42, 706, 1230, 1315, 1651
HaeIII GGCC 4 cut(s) 19, 83, 152, 231
Hin1II CATG 4 cut(s) 411, 1132, 1396, 1660
HindIII AAGCTT 4 cut(s) 59, 741, 881, 1287
HinfI GANTC 2 cut(s) 986, 1694
HphI GGTGA 5 cut(s) 28, 409, 656, 940, 1147
Hpy166II GTNNAC 5 cut(s) 668, 757, 842, 1500, 1638
Hpy188I TCNGA 5 cut(s) 573, 871, 1186, 1318, 1699
Hpy188III TCNNGA 8 cut(s) 128, 304, 597, 704, 1124, 1283, 1346, 1385
Hpy8I GTNNAC 5 cut(s) 668, 757, 842, 1500, 1638
HpyAV CCTTC 6 cut(s) 242, 271, 620, 959, 1613, 1655
HpyCH4III ACNGT 3 cut(s) 416, 565, 923
HpyCH4IV ACGT 3 cut(s) 691, 844, 1075
HpyF10VI GCNNNNNNNGC 8 cut(s) 253, 418, 1037, 1097, 1210, 1481, 1571, 1580
HpyF3I CTNAG 3 cut(s) 570, 705, 1033
HpySE526I ACGT 3 cut(s) 691, 844, 1075
Hsp92II CATG 4 cut(s) 411, 1132, 1396, 1660
Ksp22I TGATCA 1 cut(s) 1264
Kzo9I GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
LguI GCTCTTC 1 cut(s) 1344
LmnI GCTCC 5 cut(s) 23, 725, 1028, 1492, 1523
Lsp1109I GCAGC 5 cut(s) 1468, 1496, 1552, 1555, 1583
LweI GCATC 6 cut(s) 754, 823, 877, 1078, 1313, 1378
MaeI CTAG 4 cut(s) 963, 990, 1434, 1455
MaeII ACGT 3 cut(s) 691, 844, 1075
MaeIII GTNAC 3 cut(s) 34, 545, 1022
MalI GATC 8 cut(s) 95, 132, 577, 968, 1044, 1266, 1344, 1383
MboI GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
MfeI CAATTG 1 cut(s) 1560
MflI RGATCY 2 cut(s) 966, 1381
MhlI GDGCHC 3 cut(s) 127, 790, 844
MlsI TGGCCA 1 cut(s) 83
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 995
MnlI CCTC 9 cut(s) 361, 593, 895, 1030, 1167, 1254, 1322, 1609, 1626
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 83
MseI TTAA 7 cut(s) 63, 734, 879, 971, 1236, 1364, 1596
MslI CAYNNNNRTG 4 cut(s) 762, 1020, 1133, 1495
Msp20I TGGCCA 1 cut(s) 83
MspCI CTTAAG 3 cut(s) 62, 878, 1595
MspR9I CCNGG 3 cut(s) 21, 443, 1248
MunI CAATTG 1 cut(s) 1560
Mva1269I GAATGC 1 cut(s) 1176
MvaI CCWGG 3 cut(s) 21, 443, 1248
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 8 cut(s) 253, 418, 1037, 1097, 1210, 1481, 1571, 1580
NcoI CCATGG 1 cut(s) 1392
NdeII GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
NlaIII CATG 4 cut(s) 411, 1132, 1396, 1660
NlaIV GGNNCC 3 cut(s) 151, 1030, 1525
NmuCI GTSAC 2 cut(s) 34, 1022
PciSI GCTCTTC 1 cut(s) 1344
PctI GAATGC 1 cut(s) 1176
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 1 cut(s) 1694
PkrI GCNGC 5 cut(s) 1483, 1486, 1567, 1570, 1573
PleI GAGTC 1 cut(s) 994
PpsI GAGTC 1 cut(s) 994
Psp6I CCWGG 3 cut(s) 19, 441, 1246
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 3 cut(s) 19, 441, 1246
PspN4I GGNNCC 3 cut(s) 151, 1030, 1525
PspPI GGNCC 3 cut(s) 17, 150, 229
PsrI GAACNNNNNNTAC 2 cut(s) 595, 627
PstI CTGCAG 4 cut(s) 189, 1164, 1486, 1573
PstNI CAGNNNCTG 1 cut(s) 1537
PsuI RGATCY 2 cut(s) 966, 1381
RsaI GTAC 1 cut(s) 1148
RsaNI GTAC 1 cut(s) 1147
RseI CAYNNNNRTG 4 cut(s) 762, 1020, 1133, 1495
SapI GCTCTTC 1 cut(s) 1344
SaqAI TTAA 7 cut(s) 63, 734, 879, 971, 1236, 1364, 1596
SatI GCNGC 5 cut(s) 1482, 1485, 1566, 1569, 1572
Sau3AI GATC 8 cut(s) 93, 130, 575, 966, 1042, 1264, 1342, 1381
Sau96I GGNCC 3 cut(s) 17, 150, 229
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 3 cut(s) 21, 443, 1248
SduI GDGCHC 3 cut(s) 127, 790, 844
SfaNI GCATC 6 cut(s) 754, 823, 877, 1078, 1313, 1378
SfcI CTRYAG 4 cut(s) 185, 1160, 1482, 1569
SmiMI CAYNNNNRTG 4 cut(s) 762, 1020, 1133, 1495
SmlI CTYRAG 5 cut(s) 62, 126, 878, 1355, 1595
SmoI CTYRAG 5 cut(s) 62, 126, 878, 1355, 1595
SsiI CCGC 2 cut(s) 147, 1048
SspI AATATT 1 cut(s) 388
SspMI CTAG 4 cut(s) 963, 990, 1434, 1455
StyD4I CCNGG 3 cut(s) 19, 441, 1246
StyI CCWWGG 3 cut(s) 84, 99, 1392
TaaI ACNGT 3 cut(s) 416, 565, 923
TaiI ACGT 3 cut(s) 694, 847, 1078
TaqI TCGA 2 cut(s) 578, 1215
TaqII GACCGA 1 cut(s) 305
TatI WGTACW 1 cut(s) 1146
TfiI GAWTC 1 cut(s) 1694
Tru1I TTAA 7 cut(s) 63, 734, 879, 971, 1236, 1364, 1596
Tru9I TTAA 7 cut(s) 63, 734, 879, 971, 1236, 1364, 1596
TscAI CASTG 4 cut(s) 166, 419, 568, 1414
TseFI GTSAC 2 cut(s) 34, 1022
TseI GCWGC 5 cut(s) 1481, 1484, 1565, 1568, 1571
Tsp45I GTSAC 2 cut(s) 34, 1022
TspDTI ATGAA 9 cut(s) 319, 325, 331, 457, 702, 795, 941, 1605, 1658
TspGWI ACGGA 3 cut(s) 1041, 1052, 1718
TspRI CASTG 4 cut(s) 166, 419, 568, 1414
Vha464I CTTAAG 3 cut(s) 62, 878, 1595
VneI GTGCAC 1 cut(s) 840
XapI RAATTY 3 cut(s) 237, 482, 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 4 cut(s) 963, 990, 1434, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.